Wall clock time and date at job start Mon Mar 30 2020 02:38:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46499 * 120.00136 * 2 1
4 4 C 1.50697 * 109.47293 * 270.00491 * 3 2 1
5 5 H 1.07997 * 120.00010 * 359.97438 * 4 3 2
6 6 C 1.37875 * 120.00091 * 180.02562 * 4 3 2
7 7 N 1.31517 * 120.00149 * 359.97438 * 6 4 3
8 8 Si 1.86797 * 120.00247 * 179.97438 * 6 4 3
9 9 H 1.48498 * 109.47151 * 359.97438 * 8 6 4
10 10 H 1.48493 * 109.47614 * 119.99582 * 8 6 4
11 11 H 1.48497 * 109.46911 * 239.99550 * 8 6 4
12 12 C 1.34784 * 119.99971 * 180.02562 * 2 1 3
13 13 O 1.21283 * 119.99649 * 179.97438 * 12 2 1
14 14 C 1.50697 * 119.99774 * 359.72768 * 12 2 1
15 15 H 1.08998 * 110.96645 * 335.69303 * 14 12 2
16 16 C 1.54147 * 111.09631 * 211.57066 * 14 12 2
17 17 C 1.50941 * 110.47160 * 213.77963 * 16 14 12
18 18 C 1.39594 * 126.80379 * 200.17917 * 17 16 14
19 19 C 1.37703 * 121.05182 * 180.61133 * 18 17 16
20 20 C 1.38320 * 120.54345 * 359.97438 * 19 18 17
21 21 C 1.38028 * 119.29152 * 359.88186 * 20 19 18
22 22 C 1.38821 * 120.16271 * 0.02562 * 21 20 19
23 23 S 1.77435 * 130.57242 * 180.23993 * 22 21 20
24 24 H 1.08999 * 109.47256 * 269.99572 * 1 2 3
25 25 H 1.08998 * 109.47416 * 29.99674 * 1 2 3
26 26 H 1.09008 * 109.47058 * 150.00274 * 1 2 3
27 27 H 1.08997 * 109.46865 * 30.00228 * 3 2 1
28 28 H 1.08998 * 109.47058 * 149.99741 * 3 2 1
29 29 H 0.96995 * 120.00744 * 180.02562 * 7 6 4
30 30 H 1.09006 * 109.27510 * 334.02478 * 16 14 12
31 31 H 1.08996 * 109.28260 * 93.46018 * 16 14 12
32 32 H 1.07993 * 119.47581 * 0.60785 * 18 17 16
33 33 H 1.08001 * 119.73236 * 180.02562 * 19 18 17
34 34 H 1.08000 * 120.35682 * 179.89983 * 20 19 18
35 35 H 1.08003 * 119.91970 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4486 1.7038 -1.4208
5 1 2.0980 1.0959 -2.2417
6 6 3.1268 2.8775 -1.6727
7 7 3.5543 3.6176 -0.6731
8 14 3.4387 3.4165 -3.4338
9 1 2.8616 2.4161 -4.3672
10 1 2.8017 4.7373 -3.6675
11 1 4.9014 3.5243 -3.6668
12 6 2.1389 -1.1673 -0.0005
13 8 3.3517 -1.1672 -0.0010
14 6 1.3854 -2.4723 0.0051
15 1 0.3888 -2.3454 0.4279
16 6 2.1721 -3.5640 0.7569
17 6 1.9339 -4.9149 0.1270
18 6 2.1340 -6.1619 0.7216
19 6 1.8887 -7.3266 0.0292
20 6 1.4358 -7.2856 -1.2772
21 6 1.2288 -6.0623 -1.8821
22 6 1.4743 -4.8882 -1.1833
23 16 1.3009 -3.1930 -1.6780
24 1 -0.3634 -0.0001 1.0276
25 1 -0.3634 0.8900 -0.5138
26 1 -0.3633 -0.8901 -0.5138
27 1 1.6084 2.0283 0.5139
28 1 3.1499 1.1383 0.5139
29 1 4.0311 4.4434 -0.8502
30 1 3.2365 -3.3317 0.7182
31 1 1.8483 -3.5891 1.7974
32 1 2.4870 -6.2141 1.7409
33 1 2.0504 -8.2799 0.5102
34 1 1.2459 -8.2009 -1.8180
35 1 0.8749 -6.0185 -2.9015
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000106064353.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:57
Heat of formation + Delta-G solvation = -23.357812 kcal
Electronic energy + Delta-G solvation = -18616.072574 eV
Core-core repulsion = 15704.361138 eV
Total energy + Delta-G solvation = -2911.711436 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 277.088 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.99544 -40.10943 -36.80020 -35.50781 -34.72876 -31.82476 -31.23146 -29.56773
-27.49732 -26.27145 -24.55195 -23.73395 -22.18881 -20.26866 -18.84688 -18.67827
-18.31116 -17.27531 -16.82029 -16.45436 -16.28703 -16.12819 -15.44456 -15.08730
-14.55521 -14.30117 -14.04823 -14.01898 -13.80440 -13.69742 -13.54373 -13.25556
-12.97113 -12.80692 -12.53519 -12.37173 -12.25217 -12.03740 -11.72931 -11.29095
-11.02863 -10.67422 -10.61680 -9.76320 -9.54737 -8.56119 -8.26260 -6.40560
0.02015 0.22967 0.34996 1.07423 1.34153 1.36745 1.48749 1.91811
2.09068 2.37814 2.68882 3.03652 3.27005 3.34145 3.70354 3.85364
3.94763 4.19163 4.30617 4.41760 4.47979 4.58793 4.62139 4.62929
4.85446 4.87723 4.94877 5.03615 5.16803 5.30082 5.40503 5.48586
5.52368 5.75051 5.95514 6.00980 6.54984 6.68212 7.16235 7.32883
8.81194
Molecular weight = 277.09amu
Principal moments of inertia in cm(-1)
A = 0.031058 B = 0.004295 C = 0.004095
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 901.323062 B = 6517.240514 C = 6835.283167
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.072 3.928
2 N -0.599 5.599
3 C 0.260 3.740
4 C -0.545 4.545
5 H 0.048 0.952
6 C 0.012 3.988
7 N -0.925 5.925
8 Si 0.965 3.035
9 H -0.271 1.271
10 H -0.266 1.266
11 H -0.280 1.280
12 C 0.519 3.481
13 O -0.575 6.575
14 C -0.069 4.069
15 H 0.152 0.848
16 C -0.077 4.077
17 C -0.114 4.114
18 C -0.098 4.098
19 C -0.115 4.115
20 C -0.099 4.099
21 C -0.099 4.099
22 C -0.101 4.101
23 S -0.147 6.147
24 H 0.083 0.917
25 H 0.073 0.927
26 H 0.083 0.917
27 H 0.032 0.968
28 H 0.003 0.997
29 H 0.268 0.732
30 H 0.083 0.917
31 H 0.120 0.880
32 H 0.145 0.855
33 H 0.161 0.839
34 H 0.164 0.836
35 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.556 -21.593 2.781 23.776
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 N -0.330 5.330
3 C 0.139 3.861
4 C -0.584 4.584
5 H 0.067 0.933
6 C -0.188 4.188
7 N -0.565 5.565
8 Si 0.789 3.211
9 H -0.196 1.196
10 H -0.190 1.190
11 H -0.206 1.206
12 C 0.304 3.696
13 O -0.455 6.455
14 C -0.200 4.200
15 H 0.170 0.830
16 C -0.115 4.115
17 C -0.120 4.120
18 C -0.117 4.117
19 C -0.134 4.134
20 C -0.119 4.119
21 C -0.123 4.123
22 C -0.214 4.214
23 S 0.095 5.905
24 H 0.101 0.899
25 H 0.092 0.908
26 H 0.101 0.899
27 H 0.050 0.950
28 H 0.022 0.978
29 H 0.077 0.923
30 H 0.102 0.898
31 H 0.138 0.862
32 H 0.163 0.837
33 H 0.179 0.821
34 H 0.182 0.818
35 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -9.027 -20.690 1.682 22.636
hybrid contribution 0.642 0.476 0.229 0.831
sum -8.385 -20.214 1.911 21.967
Atomic orbital electron populations
1.22036 0.77757 1.03956 1.03256 1.48112 1.08518 1.06131 1.70218
1.18850 0.91311 0.79777 0.96180 1.21689 1.37097 1.06638 0.92948
0.93326 1.25797 0.94766 0.96319 1.01893 1.70035 1.38783 1.14815
1.32838 0.85404 0.77998 0.78442 0.79217 1.19562 1.19043 1.20584
1.20030 0.87388 0.85201 0.76979 1.90648 1.15746 1.87353 1.51803
1.24086 1.04760 0.94937 0.96240 0.83027 1.20847 1.01448 0.87968
1.01194 1.20894 1.01535 0.95501 0.94020 1.21138 0.99360 0.90030
1.01215 1.21417 0.98414 0.98839 0.94780 1.21512 0.97644 0.97265
0.95440 1.20714 1.00910 0.90181 1.00448 1.22284 1.05977 0.95663
0.97469 1.86517 1.92060 1.00439 1.11452 0.89875 0.90796 0.89876
0.94975 0.97849 0.92256 0.89826 0.86200 0.83697 0.82102 0.81804
0.84673
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 2.22 9.88 127.77 1.26 3.48 16
2 N -0.60 -26.08 2.86 -851.13 -2.43 -28.51 16
3 C 0.26 14.16 5.16 85.63 0.44 14.60 16
4 C -0.55 -32.18 9.39 25.60 0.24 -31.94 16
5 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16
6 C 0.01 0.68 5.46 84.65 0.46 1.14 16
7 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16
8 Si 0.97 45.91 29.54 68.60 2.03 47.94 16
9 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16
10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16
12 C 0.52 22.47 6.89 87.65 0.60 23.07 16
13 O -0.58 -30.61 15.39 -3.04 -0.05 -30.66 16
14 C -0.07 -2.19 2.92 30.24 0.09 -2.10 16
15 H 0.15 3.73 6.44 -2.39 -0.02 3.71 16
16 C -0.08 -2.16 5.83 30.31 0.18 -1.98 16
17 C -0.11 -2.90 5.98 -19.31 -0.12 -3.02 16
18 C -0.10 -1.83 9.97 22.47 0.22 -1.60 16
19 C -0.11 -1.66 10.00 22.16 0.22 -1.44 16
20 C -0.10 -1.51 10.08 22.24 0.22 -1.28 16
21 C -0.10 -2.11 10.05 22.36 0.22 -1.89 16
22 C -0.10 -2.78 6.48 22.56 0.15 -2.63 16
23 S -0.15 -4.90 22.54 -56.49 -1.27 -6.17 16
24 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16
25 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16
26 H 0.08 2.16 6.44 -2.38 -0.02 2.15 16
27 H 0.03 1.75 8.07 -2.39 -0.02 1.73 16
28 H 0.00 0.21 7.42 -2.39 -0.02 0.19 16
29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16
30 H 0.08 2.87 6.93 -2.38 -0.02 2.85 16
31 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16
32 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16
33 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16
34 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16
35 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16
Total: -1.00 -76.48 311.03 3.85 -72.63
By element:
Atomic # 1 Polarization: 5.17 SS G_CDS: 1.09 Total: 6.26 kcal
Atomic # 6 Polarization: -9.79 SS G_CDS: 4.20 Total: -5.59 kcal
Atomic # 7 Polarization: -82.26 SS G_CDS: -2.15 Total: -84.41 kcal
Atomic # 8 Polarization: -30.61 SS G_CDS: -0.05 Total: -30.66 kcal
Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal
Atomic # 16 Polarization: -4.90 SS G_CDS: -1.27 Total: -6.17 kcal
Total: -76.48 3.85 -72.63 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000106064353.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.275 kcal
(2) G-P(sol) polarization free energy of solvation -76.485 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.209 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.633 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.358 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds