Wall clock time and date at job start Mon Mar 30 2020 02:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46826 * 2 1 4 4 C 1.50698 * 109.46881 * 240.00295 * 2 1 3 5 5 H 1.08002 * 119.99931 * 240.00563 * 4 2 1 6 6 C 1.37880 * 120.00269 * 59.99982 * 4 2 1 7 7 N 1.31517 * 119.99978 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00047 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47088 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47131 * 120.00270 * 8 6 4 11 11 H 1.48504 * 109.46719 * 239.99982 * 8 6 4 12 12 N 1.46493 * 109.46844 * 120.00104 * 2 1 3 13 13 C 1.34778 * 120.00415 * 274.99815 * 12 2 1 14 14 O 1.21282 * 119.99691 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00325 * 180.02562 * 13 12 2 16 16 H 1.09004 * 110.96706 * 339.13058 * 15 13 12 17 17 C 1.54145 * 111.10146 * 215.00076 * 15 13 12 18 18 C 1.50874 * 110.49426 * 213.70605 * 17 15 13 19 19 C 1.39592 * 126.83205 * 200.54948 * 18 17 15 20 20 C 1.37703 * 121.05853 * 180.41360 * 19 18 17 21 21 C 1.38319 * 120.54222 * 359.97438 * 20 19 18 22 22 C 1.38034 * 119.29253 * 359.86882 * 21 20 19 23 23 C 1.38825 * 120.15790 * 359.97438 * 22 21 20 24 24 S 1.77436 * 130.56934 * 180.62545 * 23 22 21 25 25 H 1.09006 * 109.47089 * 59.99830 * 1 2 3 26 26 H 1.08998 * 109.47536 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47154 * 299.99935 * 1 2 3 28 28 H 0.96991 * 120.00091 * 180.02562 * 7 6 4 29 29 H 0.97006 * 120.00001 * 95.00591 * 12 2 1 30 30 H 1.08997 * 109.28173 * 93.42550 * 17 15 13 31 31 H 1.08998 * 109.21409 * 333.93887 * 17 15 13 32 32 H 1.08003 * 119.46863 * 0.39735 * 19 18 17 33 33 H 1.08001 * 119.72754 * 180.02562 * 20 19 18 34 34 H 1.07997 * 120.35296 * 179.87385 * 21 20 19 35 35 H 1.07993 * 119.91749 * 180.27010 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1463 -2.2870 -3.6039 10 1 1.1659 -1.5864 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8591 1.1585 2.4115 15 6 2.6498 -0.7286 3.5874 16 1 2.5178 -1.8068 3.4967 17 6 1.9634 -0.1906 4.8584 18 6 2.9169 -0.2217 6.0272 19 6 2.5809 -0.2036 7.3820 20 6 3.5543 -0.2277 8.3557 21 6 4.8930 -0.2710 8.0104 22 6 5.2459 -0.2928 6.6762 23 6 4.2644 -0.2718 5.6946 24 16 4.4003 -0.3054 3.9258 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7089 1.1615 -3.4843 29 1 2.2490 -1.6318 1.1525 30 1 1.0941 -0.8074 5.0865 31 1 1.6405 0.8359 4.6845 32 1 1.5408 -0.1700 7.6710 33 1 3.2700 -0.2134 9.3975 34 1 5.6539 -0.2878 8.7766 35 1 6.2880 -0.3311 6.3953 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110489166.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:07 Heat of formation + Delta-G solvation = -33.883805 kcal Electronic energy + Delta-G solvation = -18389.646446 eV Core-core repulsion = 15477.478568 eV Total energy + Delta-G solvation = -2912.167877 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.92866 -40.10368 -36.90292 -35.42632 -34.39298 -31.82643 -31.60541 -30.09965 -27.37309 -26.03469 -24.08298 -23.00718 -22.10739 -21.27616 -19.35158 -18.54672 -17.82899 -17.25590 -16.79867 -16.44762 -16.28927 -15.98392 -15.34702 -15.17095 -14.50782 -14.34379 -14.28305 -13.95618 -13.75168 -13.67602 -13.08667 -12.99305 -12.92385 -12.77327 -12.35708 -12.29108 -12.14315 -12.03432 -11.30619 -11.14358 -11.06783 -10.67588 -10.60477 -9.87818 -9.76281 -8.55472 -8.20316 -6.37974 0.02166 0.23454 0.34856 1.06811 1.43316 1.44613 1.56620 1.90382 2.20019 2.44994 2.69028 3.10324 3.27678 3.54284 3.75994 3.91028 3.98358 4.20228 4.42298 4.47910 4.59363 4.62536 4.72623 4.85327 4.89748 5.03397 5.04991 5.29583 5.37821 5.40466 5.52306 5.53722 5.63553 5.84374 5.95271 6.05909 6.68216 6.79421 7.24945 7.40125 8.86276 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.041876 B = 0.003718 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.481503 B = 7528.378480 C = 7951.872127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.001 1.001 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.973 3.027 9 H -0.260 1.260 10 H -0.276 1.276 11 H -0.284 1.284 12 N -0.694 5.694 13 C 0.522 3.478 14 O -0.579 6.579 15 C -0.071 4.071 16 H 0.150 0.850 17 C -0.075 4.075 18 C -0.115 4.115 19 C -0.098 4.098 20 C -0.115 4.115 21 C -0.100 4.100 22 C -0.099 4.099 23 C -0.102 4.102 24 S -0.146 6.146 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.015 0.985 28 H 0.266 0.734 29 H 0.407 0.593 30 H 0.119 0.881 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 -7.117 21.054 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.017 0.983 4 C -0.587 4.587 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.184 1.184 10 H -0.202 1.202 11 H -0.210 1.210 12 N -0.342 5.342 13 C 0.305 3.695 14 O -0.459 6.459 15 C -0.202 4.202 16 H 0.167 0.833 17 C -0.113 4.113 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.135 4.135 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.215 4.215 24 S 0.097 5.903 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.242 0.758 30 H 0.137 0.863 31 H 0.104 0.896 32 H 0.163 0.837 33 H 0.178 0.822 34 H 0.182 0.818 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.500 -5.994 19.987 21.579 hybrid contribution -0.696 -0.486 -0.556 1.014 sum 4.804 -6.480 19.431 21.038 Atomic orbital electron populations 1.21897 0.97748 0.99778 0.99828 1.18427 0.91489 0.91884 0.81488 0.98289 1.21558 1.32713 1.13634 0.90750 0.90880 1.25795 0.94815 0.95569 1.02313 1.70050 1.36915 1.23843 1.24659 0.85282 0.78142 0.78499 0.78328 1.18422 1.20196 1.21012 1.46271 1.64282 1.14349 1.09333 1.20016 0.77959 0.86839 0.84677 1.90654 1.52581 1.17496 1.85197 1.24045 0.94598 1.05285 0.96264 0.83271 1.20821 0.98753 1.03883 0.87849 1.20898 0.92313 1.02967 0.95839 1.21142 1.01620 0.99186 0.89839 1.21417 0.92484 0.98928 1.00660 1.21513 0.97548 0.97935 0.94905 1.20719 0.98435 1.01007 0.92115 1.22291 0.97115 1.07041 0.95038 1.86445 1.12121 1.89321 1.02430 0.91357 0.93725 0.96581 0.92456 0.75767 0.86275 0.89592 0.83715 0.82155 0.81839 0.84641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.71 9.26 71.98 0.67 -6.05 16 2 C 0.27 14.09 2.56 44.25 0.11 14.20 16 3 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 4 C -0.55 -29.19 8.73 25.60 0.22 -28.96 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.02 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -52.63 11.32 21.45 0.24 -52.39 16 8 Si 0.97 42.16 29.54 68.60 2.03 44.18 16 9 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 10 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 N -0.69 -29.09 5.07 -446.12 -2.26 -31.35 16 13 C 0.52 21.21 6.98 87.66 0.61 21.82 16 14 O -0.58 -28.71 15.56 -3.04 -0.05 -28.76 16 15 C -0.07 -2.14 3.82 30.23 0.12 -2.02 16 16 H 0.15 3.52 8.11 -2.39 -0.02 3.50 16 17 C -0.08 -2.02 5.84 30.29 0.18 -1.84 16 18 C -0.11 -2.83 5.98 -19.33 -0.12 -2.94 16 19 C -0.10 -1.79 9.97 22.47 0.22 -1.56 16 20 C -0.12 -1.62 10.00 22.16 0.22 -1.40 16 21 C -0.10 -1.47 10.08 22.24 0.22 -1.25 16 22 C -0.10 -2.06 10.05 22.36 0.22 -1.84 16 23 C -0.10 -2.72 6.48 22.57 0.15 -2.58 16 24 S -0.15 -4.65 22.54 -56.49 -1.27 -5.92 16 25 H 0.07 3.76 6.07 -2.38 -0.01 3.75 16 26 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.27 14.40 8.31 -92.72 -0.77 13.63 16 29 H 0.41 14.31 8.52 -92.70 -0.79 13.52 16 30 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.09 2.78 6.99 -2.39 -0.02 2.77 16 32 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 34 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 35 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -69.53 310.37 2.29 -67.24 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.32 Total: 20.14 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 3.28 Total: -13.14 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -2.02 Total: -83.74 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.05 Total: -28.76 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: -4.65 SS G_CDS: -1.27 Total: -5.92 kcal Total: -69.53 2.29 -67.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110489166.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.357 kcal (2) G-P(sol) polarization free energy of solvation -69.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds