Wall clock time and date at job start Mon Mar 30 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86802 * 119.99796 * 2 1 4 4 H 1.48499 * 109.47440 * 264.14706 * 3 2 1 5 5 H 1.48505 * 109.47251 * 24.15147 * 3 2 1 6 6 H 1.48501 * 109.47059 * 144.14955 * 3 2 1 7 7 C 1.40041 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00084 * 349.10533 * 7 2 1 9 9 C 1.46377 * 120.00443 * 169.09903 * 7 2 1 10 10 O 1.21690 * 119.99632 * 352.04609 * 9 7 2 11 11 N 1.34773 * 120.00019 * 172.31923 * 9 7 2 12 12 C 1.46501 * 119.99752 * 184.14677 * 11 9 7 13 13 C 1.53000 * 109.47011 * 184.83568 * 12 11 9 14 14 S 1.81397 * 115.55310 * 33.75986 * 13 12 11 15 15 C 1.76206 * 102.99776 * 65.27469 * 14 13 12 16 16 C 1.38974 * 120.08031 * 5.17958 * 15 14 13 17 17 C 1.38081 * 119.91749 * 179.72275 * 16 15 14 18 18 C 1.38306 * 120.08028 * 0.52857 * 17 16 15 19 19 C 1.38309 * 120.16141 * 359.76793 * 18 17 16 20 20 C 1.38081 * 120.07803 * 359.96014 * 19 18 17 21 21 C 1.53002 * 117.49583 * 248.09021 * 13 12 11 22 22 C 1.52999 * 117.49888 * 179.43266 * 13 12 11 23 23 H 0.96998 * 120.00307 * 359.97438 * 1 2 3 24 24 H 0.97004 * 120.00576 * 4.14349 * 11 9 7 25 25 H 1.08997 * 109.46884 * 304.83316 * 12 11 9 26 26 H 1.08998 * 109.47318 * 64.83209 * 12 11 9 27 27 H 1.07995 * 120.03963 * 359.97438 * 16 15 14 28 28 H 1.07996 * 119.95995 * 180.27618 * 17 16 15 29 29 H 1.07997 * 119.92408 * 179.74295 * 18 17 16 30 30 H 1.07998 * 119.96182 * 179.97438 * 19 18 17 31 31 H 1.07996 * 120.03911 * 180.02562 * 20 19 18 32 32 H 1.09000 * 117.49870 * 359.97438 * 21 13 12 33 33 H 1.09005 * 117.49653 * 145.02466 * 21 13 12 34 34 H 1.09002 * 117.49910 * 214.98025 * 22 13 12 35 35 H 1.09003 * 117.49861 * 359.97258 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.6118 1.9752 -1.3927 5 1 1.3818 2.6853 0.5729 6 1 3.4710 1.4791 0.8200 7 6 2.0070 -1.2128 -0.0005 8 1 1.4816 -2.1398 0.1758 9 6 3.4509 -1.2241 -0.2403 10 8 4.0191 -0.2035 -0.5814 11 7 4.1502 -2.3662 -0.0886 12 6 5.6074 -2.3583 -0.2395 13 6 6.1383 -3.7897 -0.1385 14 16 5.0487 -5.0773 -0.8058 15 6 5.0041 -4.7056 -2.5276 16 6 5.8037 -3.6922 -3.0424 17 6 5.7704 -3.4076 -4.3931 18 6 4.9344 -4.1222 -5.2317 19 6 4.1326 -5.1274 -4.7219 20 6 4.1649 -5.4213 -3.3732 21 6 6.9839 -4.1447 1.0862 22 6 7.6473 -3.9955 -0.2852 23 1 -0.4850 0.8400 0.0004 24 1 3.6888 -3.1934 0.1206 25 1 5.8697 -1.9414 -1.2118 26 1 6.0511 -1.7498 0.5484 27 1 6.4534 -3.1308 -2.3874 28 1 6.3948 -2.6232 -4.7946 29 1 4.9072 -3.8947 -6.2871 30 1 3.4807 -5.6831 -5.3796 31 1 3.5389 -6.2065 -2.9759 32 1 7.1623 -3.3584 1.8197 33 1 6.8857 -5.1522 1.4907 34 1 7.9853 -4.9048 -0.7823 35 1 8.2618 -3.1112 -0.4541 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153803054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:35 Heat of formation + Delta-G solvation = 5.647560 kcal Electronic energy + Delta-G solvation = -18928.020734 eV Core-core repulsion = 16017.567066 eV Total energy + Delta-G solvation = -2910.453669 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.87463 -38.28437 -37.04291 -33.08480 -32.63419 -30.92061 -30.83279 -27.67573 -25.39627 -22.99162 -22.62807 -22.34363 -20.95017 -19.83151 -17.75698 -17.40365 -16.28660 -15.76676 -15.57987 -14.92309 -14.66116 -14.47429 -14.05384 -13.73341 -13.44856 -13.26069 -12.90821 -12.58702 -12.36197 -12.08676 -11.79421 -11.68392 -11.29251 -11.15786 -11.04544 -10.83628 -10.53284 -10.24178 -9.96204 -9.56534 -9.50611 -8.98193 -8.86075 -7.89709 -7.77742 -7.24367 -6.58382 -4.78296 1.31078 1.48623 1.59781 2.39400 3.46298 3.49361 3.54469 3.78106 3.83139 4.28272 4.30947 4.56145 4.67514 4.70866 4.93992 5.00844 5.03523 5.17422 5.44134 5.48092 5.50765 5.53089 5.60093 5.69315 5.83597 5.92159 6.05012 6.09268 6.14876 6.39058 6.46742 6.59153 7.00084 7.26321 7.77223 7.90782 8.37741 8.79078 9.28576 10.13092 10.43276 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.016061 B = 0.006380 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.908757 B = 4387.916334 C = 5185.488604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.101 3.899 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.325 1.325 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.084 0.916 9 C 0.551 3.449 10 O -0.623 6.623 11 N -0.749 5.749 12 C 0.167 3.833 13 C -0.150 4.150 14 S -0.054 6.054 15 C -0.080 4.080 16 C -0.118 4.118 17 C -0.104 4.104 18 C -0.127 4.127 19 C -0.106 4.106 20 C -0.102 4.102 21 C -0.128 4.128 22 C -0.152 4.152 23 H 0.281 0.719 24 H 0.395 0.605 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.906 -11.719 -4.420 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.117 4.117 3 Si 0.806 3.194 4 H -0.207 1.207 5 H -0.257 1.257 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.103 0.897 9 C 0.359 3.641 10 O -0.516 6.516 11 N -0.404 5.404 12 C 0.039 3.961 13 C -0.261 4.261 14 S 0.194 5.806 15 C -0.192 4.192 16 C -0.142 4.142 17 C -0.124 4.124 18 C -0.147 4.147 19 C -0.126 4.126 20 C -0.125 4.125 21 C -0.167 4.167 22 C -0.192 4.192 23 H 0.091 0.909 24 H 0.231 0.769 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.146 0.854 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.551 -11.916 -3.905 17.742 hybrid contribution 0.521 1.333 -0.670 1.580 sum 13.072 -10.584 -4.575 17.430 Atomic orbital electron populations 1.69579 1.08015 1.29945 1.38198 1.25765 0.94698 1.02150 0.89077 0.85125 0.77469 0.77137 0.79659 1.20669 1.25656 1.19171 1.20685 0.89674 0.95958 1.50367 0.89744 1.18278 0.88125 0.80985 0.76686 1.90160 1.72122 1.32954 1.56408 1.45832 1.04287 1.12389 1.77853 1.20598 0.84504 0.89641 1.01351 1.24177 0.95280 0.98647 1.07952 1.84879 1.61053 1.35382 0.99304 1.21747 1.00402 1.00075 0.96991 1.21360 0.99636 0.97096 0.96082 1.21062 0.98924 0.99107 0.93269 1.21135 0.97175 0.96670 0.99747 1.21017 0.98923 0.97865 0.94747 1.20722 0.98357 1.00214 0.93235 1.23080 0.99360 1.03674 0.90596 1.23313 0.91643 1.04053 1.00156 0.90871 0.76854 0.91861 0.92178 0.85356 0.85989 0.86111 0.85780 0.85741 0.87202 0.87759 0.87557 0.87717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.19 13.92 55.55 0.77 -23.41 16 2 C 0.10 2.97 5.52 -17.37 -0.10 2.88 16 3 Si 0.97 26.37 25.83 -169.99 -4.39 21.98 16 4 H -0.28 -7.82 7.11 56.52 0.40 -7.42 16 5 H -0.32 -8.30 7.11 56.52 0.40 -7.89 16 6 H -0.27 -7.51 6.64 56.52 0.38 -7.14 16 7 C -0.53 -15.56 10.08 -35.63 -0.36 -15.92 16 8 H 0.08 2.50 8.06 -52.48 -0.42 2.07 16 9 C 0.55 15.10 7.51 -12.99 -0.10 15.00 16 10 O -0.62 -18.43 12.21 5.20 0.06 -18.37 16 11 N -0.75 -16.53 5.26 -61.72 -0.32 -16.86 16 12 C 0.17 3.02 5.30 -4.04 -0.02 3.00 16 13 C -0.15 -2.07 1.33 -90.62 -0.12 -2.19 16 14 S -0.05 -0.78 20.06 -107.50 -2.16 -2.94 16 15 C -0.08 -1.23 6.10 -39.03 -0.24 -1.47 16 16 C -0.12 -1.81 8.70 -39.37 -0.34 -2.15 16 17 C -0.10 -1.44 10.04 -39.61 -0.40 -1.84 16 18 C -0.13 -1.62 10.04 -39.53 -0.40 -2.02 16 19 C -0.11 -1.36 10.04 -39.61 -0.40 -1.75 16 20 C -0.10 -1.45 9.79 -39.36 -0.39 -1.83 16 21 C -0.13 -1.39 9.94 -26.69 -0.27 -1.66 16 22 C -0.15 -1.59 9.20 -26.69 -0.25 -1.84 16 23 H 0.28 7.54 8.29 -40.82 -0.34 7.21 16 24 H 0.40 8.25 7.03 -40.82 -0.29 7.96 16 25 H 0.06 1.22 6.10 -51.93 -0.32 0.90 16 26 H 0.06 1.10 7.90 -51.93 -0.41 0.69 16 27 H 0.13 1.91 4.12 -52.49 -0.22 1.69 16 28 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.11 1.13 8.05 -51.93 -0.42 0.71 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 307.90 15.07 4.64 4.64 Total: -1.00 -33.45 307.90 -8.95 -42.40 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.19 Total: 4.35 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -3.36 Total: -11.80 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.45 Total: -40.27 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.06 Total: -18.37 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -4.39 Total: 21.98 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -2.16 Total: -2.94 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.45 -8.95 -42.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153803054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.050 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds