Wall clock time and date at job start Mon Mar 30 2020 01:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86802 * 119.99796 * 2 1 4 4 H 1.48499 * 109.47440 * 264.14706 * 3 2 1 5 5 H 1.48505 * 109.47251 * 24.15147 * 3 2 1 6 6 H 1.48501 * 109.47059 * 144.14955 * 3 2 1 7 7 C 1.40041 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00084 * 349.10533 * 7 2 1 9 9 C 1.46377 * 120.00443 * 169.09903 * 7 2 1 10 10 O 1.21690 * 119.99632 * 352.04609 * 9 7 2 11 11 N 1.34773 * 120.00019 * 172.31923 * 9 7 2 12 12 C 1.46501 * 119.99752 * 184.14677 * 11 9 7 13 13 C 1.53000 * 109.47011 * 184.83568 * 12 11 9 14 14 S 1.81397 * 115.55310 * 33.75986 * 13 12 11 15 15 C 1.76206 * 102.99776 * 65.27469 * 14 13 12 16 16 C 1.38974 * 120.08031 * 5.17958 * 15 14 13 17 17 C 1.38081 * 119.91749 * 179.72275 * 16 15 14 18 18 C 1.38306 * 120.08028 * 0.52857 * 17 16 15 19 19 C 1.38309 * 120.16141 * 359.76793 * 18 17 16 20 20 C 1.38081 * 120.07803 * 359.96014 * 19 18 17 21 21 C 1.53002 * 117.49583 * 248.09021 * 13 12 11 22 22 C 1.52999 * 117.49888 * 179.43266 * 13 12 11 23 23 H 0.96998 * 120.00307 * 359.97438 * 1 2 3 24 24 H 0.97004 * 120.00576 * 4.14349 * 11 9 7 25 25 H 1.08997 * 109.46884 * 304.83316 * 12 11 9 26 26 H 1.08998 * 109.47318 * 64.83209 * 12 11 9 27 27 H 1.07995 * 120.03963 * 359.97438 * 16 15 14 28 28 H 1.07996 * 119.95995 * 180.27618 * 17 16 15 29 29 H 1.07997 * 119.92408 * 179.74295 * 18 17 16 30 30 H 1.07998 * 119.96182 * 179.97438 * 19 18 17 31 31 H 1.07996 * 120.03911 * 180.02562 * 20 19 18 32 32 H 1.09000 * 117.49870 * 359.97438 * 21 13 12 33 33 H 1.09005 * 117.49653 * 145.02466 * 21 13 12 34 34 H 1.09002 * 117.49910 * 214.98025 * 22 13 12 35 35 H 1.09003 * 117.49861 * 359.97258 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.6118 1.9752 -1.3927 5 1 1.3818 2.6853 0.5729 6 1 3.4710 1.4791 0.8200 7 6 2.0070 -1.2128 -0.0005 8 1 1.4816 -2.1398 0.1758 9 6 3.4509 -1.2241 -0.2403 10 8 4.0191 -0.2035 -0.5814 11 7 4.1502 -2.3662 -0.0886 12 6 5.6074 -2.3583 -0.2395 13 6 6.1383 -3.7897 -0.1385 14 16 5.0487 -5.0773 -0.8058 15 6 5.0041 -4.7056 -2.5276 16 6 5.8037 -3.6922 -3.0424 17 6 5.7704 -3.4076 -4.3931 18 6 4.9344 -4.1222 -5.2317 19 6 4.1326 -5.1274 -4.7219 20 6 4.1649 -5.4213 -3.3732 21 6 6.9839 -4.1447 1.0862 22 6 7.6473 -3.9955 -0.2852 23 1 -0.4850 0.8400 0.0004 24 1 3.6888 -3.1934 0.1206 25 1 5.8697 -1.9414 -1.2118 26 1 6.0511 -1.7498 0.5484 27 1 6.4534 -3.1308 -2.3874 28 1 6.3948 -2.6232 -4.7946 29 1 4.9072 -3.8947 -6.2871 30 1 3.4807 -5.6831 -5.3796 31 1 3.5389 -6.2065 -2.9759 32 1 7.1623 -3.3584 1.8197 33 1 6.8857 -5.1522 1.4907 34 1 7.9853 -4.9048 -0.7823 35 1 8.2618 -3.1112 -0.4541 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153803054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:34 Heat of formation + Delta-G solvation = -15.238430 kcal Electronic energy + Delta-G solvation = -18928.926419 eV Core-core repulsion = 16017.567066 eV Total energy + Delta-G solvation = -2911.359353 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.17971 -39.72897 -38.49311 -35.09483 -34.67278 -31.97093 -31.86818 -29.59537 -27.19128 -23.99789 -23.64621 -23.30513 -22.11369 -21.86280 -19.48743 -18.73286 -17.79478 -17.52009 -16.78110 -16.44649 -16.19373 -15.82179 -15.46546 -15.13191 -14.78776 -14.56378 -14.41050 -14.10028 -13.92977 -13.90178 -13.48580 -13.16337 -12.63848 -12.50753 -12.33765 -12.14317 -11.98524 -11.71953 -11.38665 -11.25418 -11.05827 -10.59373 -10.04398 -9.92587 -9.68491 -8.83335 -8.36718 -7.05361 0.24826 0.42647 0.53553 1.30602 1.31712 1.35847 1.59107 2.08495 2.35730 2.51135 2.77957 2.92733 3.30864 3.56358 3.60985 3.85452 3.92085 4.02021 4.21090 4.48711 4.52582 4.54561 4.59739 4.64787 4.69078 4.81765 4.88419 5.05908 5.12520 5.16242 5.32620 5.44535 5.55386 5.65602 5.95212 5.99526 6.14527 6.58846 7.23190 7.99013 8.23616 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.016061 B = 0.006380 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.908757 B = 4387.916334 C = 5185.488604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.068 3.932 3 Si 1.021 2.979 4 H -0.294 1.294 5 H -0.298 1.298 6 H -0.285 1.285 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.551 3.449 10 O -0.647 6.647 11 N -0.737 5.737 12 C 0.168 3.832 13 C -0.172 4.172 14 S -0.062 6.062 15 C -0.102 4.102 16 C -0.138 4.138 17 C -0.118 4.118 18 C -0.130 4.130 19 C -0.109 4.109 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.128 4.128 23 H 0.293 0.707 24 H 0.401 0.599 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.126 0.874 28 H 0.138 0.862 29 H 0.149 0.851 30 H 0.152 0.848 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.083 -12.197 -4.761 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.148 4.148 3 Si 0.853 3.147 4 H -0.221 1.221 5 H -0.228 1.228 6 H -0.212 1.212 7 C -0.592 4.592 8 H 0.089 0.911 9 C 0.357 3.643 10 O -0.542 6.542 11 N -0.390 5.390 12 C 0.041 3.959 13 C -0.283 4.283 14 S 0.185 5.815 15 C -0.214 4.214 16 C -0.162 4.162 17 C -0.138 4.138 18 C -0.150 4.150 19 C -0.128 4.128 20 C -0.142 4.142 21 C -0.152 4.152 22 C -0.168 4.168 23 H 0.103 0.897 24 H 0.238 0.762 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.144 0.856 28 H 0.156 0.844 29 H 0.167 0.833 30 H 0.170 0.830 31 H 0.151 0.849 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.719 -12.427 -4.237 18.990 hybrid contribution 0.176 1.412 -0.610 1.548 sum 13.895 -11.015 -4.847 18.382 Atomic orbital electron populations 1.69575 1.08433 1.31233 1.38556 1.26294 0.95322 1.04019 0.89116 0.84454 0.76162 0.75685 0.78392 1.22122 1.22780 1.21203 1.20906 0.91058 0.95728 1.51459 0.91089 1.18131 0.87857 0.81960 0.76362 1.90136 1.72523 1.34168 1.57375 1.45661 1.06222 1.11021 1.76063 1.20679 0.81765 0.92841 1.00585 1.24001 0.96999 0.95815 1.11460 1.84801 1.61925 1.35486 0.99284 1.21973 1.01155 1.00746 0.97538 1.21486 1.00233 0.97576 0.96861 1.21395 0.99512 0.99751 0.93094 1.21527 0.96311 0.96050 1.01099 1.21416 0.98933 0.97836 0.94612 1.21025 0.98551 1.00616 0.94052 1.23255 0.96904 1.04715 0.90340 1.23427 0.88756 1.05036 0.99568 0.89678 0.76199 0.93153 0.92187 0.85605 0.84425 0.83327 0.83012 0.84905 0.86409 0.86245 0.86277 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.36 13.92 21.83 0.30 -49.06 16 2 C 0.07 4.03 5.52 85.30 0.47 4.50 16 3 Si 1.02 54.24 25.83 68.60 1.77 56.01 16 4 H -0.29 -16.15 7.11 99.48 0.71 -15.45 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.29 -15.95 6.64 99.48 0.66 -15.29 16 7 C -0.56 -32.98 10.08 24.83 0.25 -32.73 16 8 H 0.07 4.29 8.06 -2.91 -0.02 4.27 16 9 C 0.55 30.42 7.51 86.36 0.65 31.07 16 10 O -0.65 -38.42 12.21 -4.32 -0.05 -38.47 16 11 N -0.74 -32.60 5.26 -467.41 -2.46 -35.06 16 12 C 0.17 6.00 5.30 86.38 0.46 6.46 16 13 C -0.17 -4.53 1.33 -10.79 -0.01 -4.55 16 14 S -0.06 -1.77 20.06 -56.49 -1.13 -2.91 16 15 C -0.10 -3.10 6.10 22.62 0.14 -2.96 16 16 C -0.14 -4.17 8.70 22.41 0.20 -3.97 16 17 C -0.12 -3.16 10.04 22.25 0.22 -2.94 16 18 C -0.13 -3.08 10.04 22.30 0.22 -2.86 16 19 C -0.11 -2.61 10.04 22.25 0.22 -2.38 16 20 C -0.12 -3.30 9.79 22.41 0.22 -3.08 16 21 C -0.11 -2.17 9.94 30.62 0.30 -1.87 16 22 C -0.13 -2.38 9.20 30.62 0.28 -2.10 16 23 H 0.29 15.47 8.29 -92.71 -0.77 14.70 16 24 H 0.40 16.81 7.03 -92.71 -0.65 16.16 16 25 H 0.05 1.94 6.10 -2.39 -0.01 1.93 16 26 H 0.06 2.14 7.90 -2.39 -0.02 2.12 16 27 H 0.13 3.72 4.12 -2.91 -0.01 3.70 16 28 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 29 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 30 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.13 3.31 8.06 -2.91 -0.02 3.28 16 32 H 0.12 2.10 8.05 -2.39 -0.02 2.08 16 33 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -71.37 307.90 2.47 -68.90 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.41 Total: 17.99 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 3.62 Total: -17.41 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -2.15 Total: -84.12 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.05 Total: -38.47 kcal Atomic # 14 Polarization: 54.24 SS G_CDS: 1.77 Total: 56.01 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -1.13 Total: -2.91 kcal Total: -71.37 2.47 -68.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153803054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.666 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds