Wall clock time and date at job start Mon Mar 30 2020 02:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50701 * 119.99628 * 2 1 4 4 C 1.50698 * 119.99927 * 179.97438 * 2 1 3 5 5 N 1.46505 * 109.46829 * 94.99950 * 4 2 1 6 6 C 1.34779 * 119.99784 * 179.97438 * 5 4 2 7 7 O 1.21553 * 119.99818 * 0.02562 * 6 5 4 8 8 C 1.47864 * 119.99963 * 179.97438 * 6 5 4 9 9 C 1.39672 * 120.09604 * 359.72807 * 8 6 5 10 10 C 1.38044 * 120.03172 * 179.74146 * 9 8 6 11 11 C 1.38173 * 120.24685 * 0.55348 * 10 9 8 12 12 C 1.39180 * 120.20115 * 359.70155 * 11 10 9 13 13 S 1.76207 * 120.02305 * 179.97438 * 12 11 10 14 14 C 1.76194 * 100.00116 * 265.52477 * 13 12 11 15 15 H 1.08011 * 120.00078 * 5.12178 * 14 13 12 16 16 C 1.38721 * 120.00033 * 185.11444 * 14 13 12 17 17 N 1.31629 * 120.00329 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00082 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47080 * 60.00234 * 18 16 14 20 20 H 1.48499 * 109.47418 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47364 * 300.00157 * 18 16 14 22 22 C 1.38878 * 119.95832 * 0.02562 * 12 11 10 23 23 H 1.07999 * 120.00159 * 180.02562 * 1 2 3 24 24 H 1.08003 * 119.99847 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47036 * 269.99707 * 3 2 1 26 26 H 1.08999 * 109.47570 * 30.00397 * 3 2 1 27 27 H 1.09002 * 109.46455 * 150.00613 * 3 2 1 28 28 H 1.08991 * 109.46940 * 214.99864 * 4 2 1 29 29 H 1.08999 * 109.46900 * 335.00236 * 4 2 1 30 30 H 0.96997 * 119.99738 * 0.02562 * 5 4 2 31 31 H 1.07995 * 119.98818 * 359.97438 * 9 8 6 32 32 H 1.08000 * 119.87825 * 180.25419 * 10 9 8 33 33 H 1.08005 * 119.90158 * 179.71479 * 11 10 9 34 34 H 0.96992 * 120.00181 * 179.97438 * 17 16 14 35 35 H 1.07995 * 120.12078 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4119 -1.6684 -1.3753 6 6 3.0935 -2.8051 -1.6201 7 8 3.4187 -3.5290 -0.6994 8 6 3.4446 -3.1721 -3.0088 9 6 3.0661 -2.3451 -4.0688 10 6 3.3992 -2.6863 -5.3642 11 6 4.0975 -3.8509 -5.6196 12 6 4.4751 -4.6850 -4.5714 13 16 5.3649 -6.1695 -4.9024 14 6 4.0297 -7.3167 -4.9754 15 1 3.0108 -6.9646 -4.9088 16 6 4.2870 -8.6724 -5.1185 17 7 5.5287 -9.1017 -5.1993 18 14 2.8714 -9.8887 -5.1965 19 1 2.0032 -9.5639 -6.3567 20 1 3.4087 -11.2645 -5.3496 21 1 2.0768 -9.8045 -3.9448 22 6 4.1493 -4.3471 -3.2643 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 0.0004 25 1 2.2452 1.6198 -1.0276 26 1 1.4745 2.0648 0.5139 27 1 3.0160 1.1747 0.5138 28 1 2.9742 -1.1986 0.5899 29 1 1.4386 -2.0852 0.4352 30 1 2.1527 -1.0905 -2.1099 31 1 2.5157 -1.4364 -3.8746 32 1 3.1088 -2.0430 -6.1817 33 1 4.3512 -4.1148 -6.6357 34 1 5.7086 -10.0495 -5.2989 35 1 4.4414 -4.9922 -2.4489 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161028266.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:29 Heat of formation + Delta-G solvation = -3.464311 kcal Electronic energy + Delta-G solvation = -17886.283473 eV Core-core repulsion = 14975.434684 eV Total energy + Delta-G solvation = -2910.848789 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.97568 -37.96326 -36.62116 -33.59330 -32.50058 -30.89347 -30.50720 -27.72832 -26.63553 -25.56219 -23.30401 -22.17739 -20.44088 -19.30355 -18.06260 -17.29381 -16.20142 -15.78021 -15.51006 -15.14074 -14.84305 -14.56576 -14.30982 -14.10997 -13.72119 -13.42653 -13.28726 -12.92850 -12.54090 -12.12667 -12.05612 -11.66407 -11.44070 -11.15965 -11.12217 -11.06527 -10.70647 -10.05640 -9.90391 -9.47532 -9.17930 -9.14399 -9.00180 -8.58152 -8.02956 -6.70700 -6.27740 -4.01899 1.16795 1.66270 1.67010 3.04730 3.20648 3.24025 3.26857 3.31769 3.49256 4.09605 4.26873 4.35746 4.56080 4.87086 5.07286 5.08659 5.10087 5.24196 5.27581 5.38382 5.48113 5.49774 5.53688 5.60582 5.74761 5.87784 5.99239 6.16605 6.25507 6.31997 6.42514 6.59107 6.63832 6.93604 7.19384 7.49636 7.57941 8.28919 8.33099 9.17889 10.78973 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.025247 B = 0.003742 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.766318 B = 7479.976653 C = 7912.937650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.119 4.119 4 C 0.155 3.845 5 N -0.728 5.728 6 C 0.563 3.437 7 O -0.534 6.534 8 C -0.154 4.154 9 C -0.090 4.090 10 C -0.141 4.141 11 C -0.055 4.055 12 C -0.107 4.107 13 S -0.034 6.034 14 C -0.521 4.521 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.871 5.871 18 Si 0.921 3.079 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.273 1.273 22 C -0.019 4.019 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.399 0.601 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.270 0.730 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.218 19.418 5.232 21.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.176 4.176 4 C 0.032 3.968 5 N -0.381 5.381 6 C 0.351 3.649 7 O -0.412 6.412 8 C -0.159 4.159 9 C -0.109 4.109 10 C -0.161 4.161 11 C -0.076 4.076 12 C -0.217 4.217 13 S 0.200 5.800 14 C -0.668 4.668 15 H 0.093 0.907 16 C -0.135 4.135 17 N -0.506 5.506 18 Si 0.747 3.253 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.198 1.198 22 C -0.040 4.040 23 H 0.120 0.880 24 H 0.121 0.879 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.235 0.765 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.080 0.920 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.683 18.486 5.760 20.483 hybrid contribution -2.398 -0.183 -0.207 2.414 sum -9.081 18.302 5.553 21.172 Atomic orbital electron populations 1.23902 0.95168 1.02405 0.99033 1.21853 0.95534 0.95559 1.01886 1.20869 1.00307 0.94058 1.02335 1.20314 0.99327 0.93334 0.83847 1.45920 1.58830 1.24575 1.08821 1.18446 0.77118 0.80318 0.89005 1.90777 1.53586 1.50966 1.45834 1.19852 1.05555 0.98513 0.91981 1.21133 0.98846 0.98190 0.92729 1.21056 1.00922 0.97906 0.96209 1.21964 0.93516 0.92707 0.99442 1.22857 1.02206 1.02617 0.94055 1.83599 1.11425 0.93102 1.91872 1.22799 0.93039 0.92786 1.58180 0.90670 1.24997 0.96700 0.97447 0.94390 1.69976 1.18332 1.15825 1.46444 0.86178 0.81066 0.79083 0.79004 1.19813 1.20726 1.19785 1.21957 0.91703 0.93227 0.97154 0.88031 0.87940 0.91319 0.91666 0.91557 0.90832 0.90912 0.76523 0.86564 0.85857 0.85055 0.91990 0.84296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 13.89 29.01 0.40 -0.77 16 2 C -0.15 -1.16 5.42 -101.07 -0.55 -1.71 16 3 C -0.12 -0.76 10.03 36.01 0.36 -0.40 16 4 C 0.15 1.64 5.83 -5.19 -0.03 1.61 16 5 N -0.73 -8.66 5.50 -62.42 -0.34 -9.01 16 6 C 0.56 9.26 7.77 -12.32 -0.10 9.17 16 7 O -0.53 -10.81 16.34 5.32 0.09 -10.73 16 8 C -0.15 -2.63 5.87 -105.00 -0.62 -3.25 16 9 C -0.09 -1.24 9.54 -39.12 -0.37 -1.61 16 10 C -0.14 -2.03 10.02 -39.68 -0.40 -2.42 16 11 C -0.06 -0.99 9.79 -39.26 -0.38 -1.38 16 12 C -0.11 -2.30 5.45 -38.99 -0.21 -2.51 16 13 S -0.03 -0.90 21.41 -107.50 -2.30 -3.20 16 14 C -0.52 -14.80 9.46 30.91 0.29 -14.51 16 15 H 0.08 2.11 7.79 -52.48 -0.41 1.70 16 16 C 0.07 2.08 5.49 -17.46 -0.10 1.98 16 17 N -0.87 -25.60 13.22 55.49 0.73 -24.86 16 18 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.02 -0.39 9.34 -38.92 -0.36 -0.75 16 23 H 0.10 0.74 7.99 -52.49 -0.42 0.32 16 24 H 0.10 0.57 8.04 -52.48 -0.42 0.15 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.34 8.06 -51.93 -0.42 -0.07 16 27 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.07 0.82 8.10 -51.93 -0.42 0.39 16 29 H 0.07 0.83 7.99 -51.93 -0.41 0.41 16 30 H 0.40 3.73 6.49 -40.82 -0.27 3.47 16 31 H 0.12 1.13 6.40 -52.49 -0.34 0.80 16 32 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.14 3.11 7.65 -52.49 -0.40 2.70 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -32.67 324.40 -8.35 -41.02 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.33 Total: 1.89 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.06 Total: -16.55 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.39 Total: -33.87 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.67 -8.35 -41.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161028266.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.557 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds