Wall clock time and date at job start Mon Mar 30 2020 02:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37093 * 120.00295 * 2 1 4 4 H 1.07998 * 120.00433 * 202.35214 * 3 2 1 5 5 C 1.38950 * 119.99560 * 22.35464 * 3 2 1 6 6 N 1.31414 * 120.00156 * 13.56530 * 5 3 2 7 7 Si 1.86805 * 120.00122 * 193.56377 * 5 3 2 8 8 H 1.48504 * 109.46835 * 84.90524 * 7 5 3 9 9 H 1.48498 * 109.47373 * 204.90577 * 7 5 3 10 10 H 1.48499 * 109.46732 * 324.90848 * 7 5 3 11 11 C 1.34777 * 120.00118 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00604 * 180.02562 * 11 2 1 13 13 C 1.50709 * 119.99801 * 359.97438 * 11 2 1 14 14 H 1.09000 * 109.15148 * 334.51694 * 13 11 2 15 15 S 1.81329 * 109.31347 * 94.03321 * 13 11 2 16 16 C 1.82067 * 100.83835 * 166.17396 * 15 13 11 17 17 C 1.52148 * 107.71703 * 295.88562 * 16 15 13 18 18 C 1.50233 * 113.57984 * 52.85932 * 17 16 15 19 19 C 1.39943 * 114.45544 * 159.79569 * 18 17 16 20 20 C 1.37455 * 121.52762 * 178.98713 * 19 18 17 21 21 C 1.38290 * 119.51054 * 0.02812 * 20 19 18 22 22 C 1.37572 * 119.25599 * 0.49566 * 21 20 19 23 23 C 1.36936 * 126.74871 * 339.41096 * 18 17 16 24 24 H 1.09004 * 109.46750 * 272.01707 * 1 2 3 25 25 H 1.08997 * 109.47595 * 32.01476 * 1 2 3 26 26 H 1.09002 * 109.47423 * 152.02306 * 1 2 3 27 27 H 0.97008 * 119.99982 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.81154 * 55.43809 * 16 15 13 29 29 H 1.09004 * 109.81178 * 176.32856 * 16 15 13 30 30 H 1.08998 * 108.66224 * 173.91823 * 17 16 15 31 31 H 1.09002 * 108.66212 * 291.93866 * 17 16 15 32 32 H 1.08003 * 119.24236 * 358.97509 * 19 18 17 33 33 H 1.08003 * 120.24849 * 180.02562 * 20 19 18 34 34 H 1.08000 * 120.37696 * 180.35228 * 21 20 19 35 35 H 1.08001 * 119.32803 * 179.76571 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1696 1.2224 -0.3557 5 6 1.5341 2.3453 0.4577 6 7 0.4084 2.2683 1.1314 7 14 2.3054 4.0119 0.1155 8 1 1.8840 4.4860 -1.2273 9 1 1.8606 4.9843 1.1458 10 1 3.7849 3.8901 0.1556 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0001 13 6 1.3853 -2.4724 -0.0005 14 1 0.4017 -2.3174 0.4429 15 16 1.1890 -3.0515 -1.7076 16 6 0.6671 -4.7731 -1.4271 17 6 1.8164 -5.5001 -0.7450 18 6 2.3175 -4.8068 0.4900 19 6 3.0342 -5.6299 1.3660 20 6 3.5763 -5.1405 2.5305 21 6 3.4126 -3.8049 2.8495 22 6 2.6999 -2.9927 1.9981 23 6 2.1463 -3.4878 0.8157 24 1 -0.3633 0.0362 1.0271 25 1 -0.3634 0.8713 -0.5448 26 1 -0.3634 -0.9076 -0.4821 27 1 -0.0222 3.0768 1.4506 28 1 -0.2144 -4.7921 -0.7862 29 1 0.4417 -5.2508 -2.3806 30 1 1.4828 -6.5012 -0.4719 31 1 2.6414 -5.5890 -1.4518 32 1 3.1643 -6.6738 1.1216 33 1 4.1261 -5.7942 3.1915 34 1 3.8375 -3.4044 3.7581 35 1 2.5681 -1.9503 2.2480 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172933262.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:54 Heat of formation + Delta-G solvation = 3.497289 kcal Electronic energy + Delta-G solvation = -19432.525571 eV Core-core repulsion = 16521.978659 eV Total energy + Delta-G solvation = -2910.546911 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.69245 -38.16330 -34.76591 -34.29192 -32.35551 -31.52115 -29.51953 -27.67304 -26.13720 -24.55846 -23.53398 -22.18858 -20.41799 -19.07116 -16.94648 -16.36050 -16.25699 -16.16438 -15.12244 -14.96400 -14.72845 -14.40800 -14.07272 -13.58799 -13.19394 -12.87458 -12.78375 -12.58900 -12.26869 -11.92031 -11.73173 -11.41669 -11.34376 -11.18952 -10.99101 -10.79596 -10.59608 -10.38644 -10.29435 -9.66690 -9.08060 -8.58555 -8.41597 -8.25696 -7.74204 -7.37409 -6.39001 -3.92587 1.53988 1.66407 1.86105 2.67910 3.16506 3.22991 3.28040 3.91160 4.05000 4.11594 4.67492 4.75779 4.80762 4.98237 5.12975 5.17046 5.25494 5.34628 5.46513 5.60454 5.63794 5.73019 5.75868 5.92030 5.94633 6.22032 6.31905 6.36339 6.68622 6.78166 6.82944 6.88837 7.15585 7.26671 7.50609 8.04700 8.41355 9.11474 9.32912 9.90164 10.64213 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.005944 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.370837 B = 4709.642412 C = 5399.369024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.431 5.431 3 C -0.302 4.302 4 H 0.101 0.899 5 C 0.032 3.968 6 N -0.876 5.876 7 Si 0.929 3.071 8 H -0.276 1.276 9 H -0.283 1.283 10 H -0.268 1.268 11 C 0.461 3.539 12 O -0.569 6.569 13 C -0.030 4.030 14 H 0.108 0.892 15 S -0.224 6.224 16 C -0.092 4.092 17 C -0.075 4.075 18 C -0.076 4.076 19 C -0.131 4.131 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.079 4.079 23 C -0.050 4.050 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.034 0.966 27 H 0.269 0.731 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 -13.448 0.112 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.150 5.150 3 C -0.431 4.431 4 H 0.119 0.881 5 C -0.172 4.172 6 N -0.515 5.515 7 Si 0.755 3.245 8 H -0.201 1.201 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.247 3.753 12 O -0.452 6.452 13 C -0.161 4.161 14 H 0.126 0.874 15 S 0.005 5.995 16 C -0.240 4.240 17 C -0.114 4.114 18 C -0.076 4.076 19 C -0.150 4.150 20 C -0.138 4.138 21 C -0.144 4.144 22 C -0.098 4.098 23 C -0.052 4.052 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.126 0.874 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.578 -12.733 -0.818 12.856 hybrid contribution -0.076 0.317 1.093 1.141 sum -1.654 -12.415 0.275 12.528 Atomic orbital electron populations 1.21617 0.81006 0.99493 1.01802 1.43569 1.05647 1.04414 1.61324 1.19712 0.99742 0.83377 1.40256 0.88104 1.25374 0.96526 1.00209 0.95098 1.70008 1.18203 1.29597 1.33684 0.85901 0.79664 0.80829 0.78112 1.20140 1.20876 1.19294 1.18942 0.87721 0.83073 0.85581 1.90559 1.13118 1.86014 1.55546 1.22345 1.02383 0.96935 0.94484 0.87388 1.87280 1.89351 1.11977 1.10874 1.23305 1.00480 0.95772 1.04443 1.20371 0.97883 0.98219 0.94912 1.19305 0.99487 0.92567 0.96257 1.21164 0.99623 0.99148 0.95017 1.20916 1.00083 0.95688 0.97112 1.20994 0.99645 0.93866 0.99873 1.21397 0.95415 1.00066 0.92937 1.18996 0.99082 0.91974 0.95139 0.92256 0.90994 0.94769 0.92047 0.89702 0.87351 0.90274 0.89666 0.86576 0.86337 0.86050 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.37 8.15 59.85 0.49 2.85 16 2 N -0.43 -11.15 3.02 -122.19 -0.37 -11.52 16 3 C -0.30 -8.42 9.28 -14.93 -0.14 -8.56 16 4 H 0.10 2.96 7.41 -52.49 -0.39 2.57 16 5 C 0.03 0.84 5.07 -17.47 -0.09 0.75 16 6 N -0.88 -22.99 10.72 55.50 0.60 -22.40 16 7 Si 0.93 20.63 29.57 -169.99 -5.03 15.60 16 8 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 C 0.46 11.49 5.32 -10.98 -0.06 11.43 16 12 O -0.57 -16.11 15.28 5.55 0.08 -16.02 16 13 C -0.03 -0.60 2.18 -28.94 -0.06 -0.67 16 14 H 0.11 2.04 6.31 -51.92 -0.33 1.71 16 15 S -0.22 -4.03 21.50 -107.50 -2.31 -6.34 16 16 C -0.09 -1.16 6.57 36.72 0.24 -0.92 16 17 C -0.08 -0.94 5.29 -28.54 -0.15 -1.09 16 18 C -0.08 -1.19 5.74 -104.68 -0.60 -1.79 16 19 C -0.13 -1.82 9.39 -39.23 -0.37 -2.19 16 20 C -0.12 -1.67 10.05 -39.85 -0.40 -2.07 16 21 C -0.13 -2.01 10.07 -39.81 -0.40 -2.41 16 22 C -0.08 -1.51 8.27 -39.31 -0.33 -1.84 16 23 C -0.05 -0.94 5.20 -104.49 -0.54 -1.49 16 24 H 0.06 1.37 7.54 -51.93 -0.39 0.97 16 25 H 0.07 1.70 7.10 -51.93 -0.37 1.33 16 26 H 0.03 0.67 6.17 -51.93 -0.32 0.35 16 27 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.08 0.76 7.97 -51.93 -0.41 0.34 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.12 1.25 7.94 -52.48 -0.42 0.83 16 33 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.13 2.69 6.88 -52.49 -0.36 2.33 16 LS Contribution 298.18 15.07 4.49 4.49 Total: -1.00 -31.20 298.18 -9.18 -40.38 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -4.24 Total: 3.79 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -2.41 Total: -7.98 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.23 Total: -33.92 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.08 Total: -16.02 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Atomic # 16 Polarization: -4.03 SS G_CDS: -2.31 Total: -6.34 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.20 -9.18 -40.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172933262.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.881 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds