Wall clock time and date at job start Mon Mar 30 2020 02:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37093 * 120.00295 * 2 1 4 4 H 1.07998 * 120.00433 * 202.35214 * 3 2 1 5 5 C 1.38950 * 119.99560 * 22.35464 * 3 2 1 6 6 N 1.31414 * 120.00156 * 13.56530 * 5 3 2 7 7 Si 1.86805 * 120.00122 * 193.56377 * 5 3 2 8 8 H 1.48504 * 109.46835 * 84.90524 * 7 5 3 9 9 H 1.48498 * 109.47373 * 204.90577 * 7 5 3 10 10 H 1.48499 * 109.46732 * 324.90848 * 7 5 3 11 11 C 1.34777 * 120.00118 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00604 * 180.02562 * 11 2 1 13 13 C 1.50709 * 119.99801 * 359.97438 * 11 2 1 14 14 H 1.09000 * 109.15148 * 334.51694 * 13 11 2 15 15 S 1.81329 * 109.31347 * 94.03321 * 13 11 2 16 16 C 1.82067 * 100.83835 * 166.17396 * 15 13 11 17 17 C 1.52148 * 107.71703 * 295.88562 * 16 15 13 18 18 C 1.50233 * 113.57984 * 52.85932 * 17 16 15 19 19 C 1.39943 * 114.45544 * 159.79569 * 18 17 16 20 20 C 1.37455 * 121.52762 * 178.98713 * 19 18 17 21 21 C 1.38290 * 119.51054 * 0.02812 * 20 19 18 22 22 C 1.37572 * 119.25599 * 0.49566 * 21 20 19 23 23 C 1.36936 * 126.74871 * 339.41096 * 18 17 16 24 24 H 1.09004 * 109.46750 * 272.01707 * 1 2 3 25 25 H 1.08997 * 109.47595 * 32.01476 * 1 2 3 26 26 H 1.09002 * 109.47423 * 152.02306 * 1 2 3 27 27 H 0.97008 * 119.99982 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.81154 * 55.43809 * 16 15 13 29 29 H 1.09004 * 109.81178 * 176.32856 * 16 15 13 30 30 H 1.08998 * 108.66224 * 173.91823 * 17 16 15 31 31 H 1.09002 * 108.66212 * 291.93866 * 17 16 15 32 32 H 1.08003 * 119.24236 * 358.97509 * 19 18 17 33 33 H 1.08003 * 120.24849 * 180.02562 * 20 19 18 34 34 H 1.08000 * 120.37696 * 180.35228 * 21 20 19 35 35 H 1.08001 * 119.32803 * 179.76571 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1696 1.2224 -0.3557 5 6 1.5341 2.3453 0.4577 6 7 0.4084 2.2683 1.1314 7 14 2.3054 4.0119 0.1155 8 1 1.8840 4.4860 -1.2273 9 1 1.8606 4.9843 1.1458 10 1 3.7849 3.8901 0.1556 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0001 13 6 1.3853 -2.4724 -0.0005 14 1 0.4017 -2.3174 0.4429 15 16 1.1890 -3.0515 -1.7076 16 6 0.6671 -4.7731 -1.4271 17 6 1.8164 -5.5001 -0.7450 18 6 2.3175 -4.8068 0.4900 19 6 3.0342 -5.6299 1.3660 20 6 3.5763 -5.1405 2.5305 21 6 3.4126 -3.8049 2.8495 22 6 2.6999 -2.9927 1.9981 23 6 2.1463 -3.4878 0.8157 24 1 -0.3633 0.0362 1.0271 25 1 -0.3634 0.8713 -0.5448 26 1 -0.3634 -0.9076 -0.4821 27 1 -0.0222 3.0768 1.4506 28 1 -0.2144 -4.7921 -0.7862 29 1 0.4417 -5.2508 -2.3806 30 1 1.4828 -6.5012 -0.4719 31 1 2.6414 -5.5890 -1.4518 32 1 3.1643 -6.6738 1.1216 33 1 4.1261 -5.7942 3.1915 34 1 3.8375 -3.4044 3.7581 35 1 2.5681 -1.9503 2.2480 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172933262.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:53 Heat of formation + Delta-G solvation = -14.796669 kcal Electronic energy + Delta-G solvation = -19433.318856 eV Core-core repulsion = 16521.978659 eV Total energy + Delta-G solvation = -2911.340197 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17006 -39.84252 -36.77775 -35.37685 -34.04408 -33.29469 -30.67487 -29.22266 -27.97857 -26.38379 -24.78517 -23.50618 -21.62125 -20.84364 -18.99555 -18.15389 -17.59927 -17.56099 -16.64941 -16.35380 -16.27360 -15.89326 -15.68631 -15.04622 -14.63937 -14.40554 -14.11703 -13.91074 -13.65855 -13.51667 -13.36489 -13.20858 -12.94636 -12.69891 -12.44316 -12.42803 -12.17236 -12.07862 -11.80321 -11.08571 -10.94693 -10.48101 -9.79444 -9.65393 -9.55479 -8.79113 -8.41079 -6.05545 0.24080 0.43454 0.51368 1.36431 1.38222 1.44165 1.50126 2.10411 2.23428 2.70356 2.99012 3.03055 3.45172 3.75923 3.85232 3.88769 4.00538 4.15568 4.22337 4.29134 4.50680 4.54669 4.57627 4.76586 4.82085 4.91876 4.94969 5.03069 5.18493 5.23233 5.37566 5.52823 5.56615 5.62361 5.98220 6.09033 6.38253 7.06950 7.32921 7.90888 8.61182 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.005944 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.370837 B = 4709.642412 C = 5399.369024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.450 5.450 3 C -0.345 4.345 4 H 0.071 0.929 5 C 0.001 3.999 6 N -0.891 5.891 7 Si 0.993 3.007 8 H -0.264 1.264 9 H -0.268 1.268 10 H -0.276 1.276 11 C 0.460 3.540 12 O -0.614 6.614 13 C -0.018 4.018 14 H 0.110 0.890 15 S -0.271 6.271 16 C -0.071 4.071 17 C -0.076 4.076 18 C -0.081 4.081 19 C -0.123 4.123 20 C -0.112 4.112 21 C -0.134 4.134 22 C -0.115 4.115 23 C -0.081 4.081 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.277 0.723 28 H 0.100 0.900 29 H 0.144 0.856 30 H 0.126 0.874 31 H 0.089 0.911 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.133 0.867 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 -16.683 -0.182 16.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.168 5.168 3 C -0.473 4.473 4 H 0.089 0.911 5 C -0.202 4.202 6 N -0.529 5.529 7 Si 0.815 3.185 8 H -0.189 1.189 9 H -0.193 1.193 10 H -0.201 1.201 11 C 0.247 3.753 12 O -0.501 6.501 13 C -0.149 4.149 14 H 0.127 0.873 15 S -0.043 6.043 16 C -0.219 4.219 17 C -0.114 4.114 18 C -0.081 4.081 19 C -0.141 4.141 20 C -0.130 4.130 21 C -0.152 4.152 22 C -0.135 4.135 23 C -0.083 4.083 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.162 0.838 30 H 0.144 0.856 31 H 0.107 0.893 32 H 0.179 0.821 33 H 0.176 0.824 34 H 0.151 0.849 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.132 -15.965 -1.104 16.144 hybrid contribution 0.107 1.153 1.212 1.676 sum -2.025 -14.811 0.108 14.949 Atomic orbital electron populations 1.21495 0.79434 1.00217 1.01211 1.43783 1.06721 1.04447 1.61824 1.19621 0.99384 0.85393 1.42947 0.91073 1.26135 0.96939 1.02957 0.94133 1.70070 1.18724 1.30808 1.33301 0.84967 0.78216 0.76555 0.78714 1.18896 1.19300 1.20126 1.19727 0.87559 0.84565 0.83435 1.90493 1.15341 1.87181 1.57054 1.21997 1.01776 0.94844 0.96292 0.87259 1.87317 1.89875 1.17878 1.09276 1.23545 1.01064 0.90576 1.06699 1.20501 0.97849 0.99714 0.93366 1.19764 0.99086 0.91343 0.97928 1.21694 0.97525 1.00921 0.93928 1.21381 0.99173 0.94717 0.97722 1.21227 0.99079 0.95078 0.99852 1.21238 0.98548 0.98618 0.95053 1.19071 1.00802 0.93391 0.95050 0.93226 0.92349 0.91914 0.91364 0.88177 0.83848 0.85575 0.89261 0.82059 0.82363 0.84878 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.67 8.15 127.77 1.04 6.71 16 2 N -0.45 -24.80 3.02 -658.88 -1.99 -26.78 16 3 C -0.35 -20.53 9.28 84.04 0.78 -19.75 16 4 H 0.07 4.54 7.41 -2.91 -0.02 4.51 16 5 C 0.00 0.06 5.07 84.93 0.43 0.49 16 6 N -0.89 -48.12 10.72 21.66 0.23 -47.89 16 7 Si 0.99 43.46 29.57 68.60 2.03 45.49 16 8 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 9 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 C 0.46 24.46 5.32 87.66 0.47 24.92 16 12 O -0.61 -37.46 15.28 -3.06 -0.05 -37.51 16 13 C -0.02 -0.75 2.18 29.16 0.06 -0.68 16 14 H 0.11 4.31 6.31 -2.39 -0.02 4.29 16 15 S -0.27 -9.64 21.50 -56.49 -1.21 -10.85 16 16 C -0.07 -1.51 6.57 71.70 0.47 -1.04 16 17 C -0.08 -1.54 5.29 29.42 0.16 -1.38 16 18 C -0.08 -2.31 5.74 -19.90 -0.11 -2.43 16 19 C -0.12 -2.85 9.39 22.50 0.21 -2.64 16 20 C -0.11 -2.74 10.05 22.10 0.22 -2.52 16 21 C -0.13 -4.28 10.07 22.12 0.22 -4.06 16 22 C -0.11 -4.66 8.27 22.45 0.19 -4.48 16 23 C -0.08 -3.10 5.20 -19.78 -0.10 -3.20 16 24 H 0.05 2.40 7.54 -2.38 -0.02 2.39 16 25 H 0.06 2.88 7.10 -2.39 -0.02 2.86 16 26 H 0.06 2.55 6.17 -2.39 -0.01 2.53 16 27 H 0.28 13.86 8.31 -92.70 -0.77 13.09 16 28 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.13 1.49 7.97 -2.39 -0.02 1.47 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.16 2.31 7.94 -2.91 -0.02 2.29 16 33 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.13 3.73 8.06 -2.91 -0.02 3.70 16 35 H 0.08 3.83 6.88 -2.91 -0.02 3.81 16 Total: -1.00 -74.72 298.18 4.14 -70.58 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 1.10 Total: 17.01 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 4.03 Total: -10.05 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -1.75 Total: -74.67 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -0.05 Total: -37.51 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -9.64 SS G_CDS: -1.21 Total: -10.85 kcal Total: -74.72 4.14 -70.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172933262.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.783 kcal (2) G-P(sol) polarization free energy of solvation -74.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds