Wall clock time and date at job start Mon Mar 30 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37095 * 120.00414 * 2 1 4 4 H 1.07989 * 120.00094 * 185.22623 * 3 2 1 5 5 C 1.38959 * 119.99661 * 5.22401 * 3 2 1 6 6 N 1.31414 * 119.99725 * 5.23670 * 5 3 2 7 7 Si 1.86797 * 119.99899 * 185.23383 * 5 3 2 8 8 H 1.48505 * 109.46858 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47165 * 120.00215 * 7 5 3 10 10 H 1.48504 * 109.46897 * 240.00295 * 7 5 3 11 11 C 1.34782 * 119.99824 * 179.97438 * 2 1 3 12 12 O 1.21285 * 119.99748 * 185.64807 * 11 2 1 13 13 C 1.50698 * 119.99701 * 5.64754 * 11 2 1 14 14 H 1.08998 * 109.31970 * 24.96041 * 13 11 2 15 15 S 1.81345 * 109.31566 * 265.33837 * 13 11 2 16 16 C 1.82078 * 100.81551 * 193.74225 * 15 13 11 17 17 C 1.52143 * 107.73180 * 64.14064 * 16 15 13 18 18 C 1.50225 * 113.60870 * 307.28833 * 17 16 15 19 19 C 1.39966 * 114.45239 * 200.10158 * 18 17 16 20 20 C 1.37452 * 121.52872 * 180.74075 * 19 18 17 21 21 C 1.38292 * 119.51345 * 0.06271 * 20 19 18 22 22 C 1.37575 * 119.25639 * 359.62233 * 21 20 19 23 23 C 1.36936 * 126.76153 * 20.29803 * 18 17 16 24 24 H 1.09002 * 109.47307 * 175.10411 * 1 2 3 25 25 H 1.08998 * 109.46709 * 55.10358 * 1 2 3 26 26 H 1.08996 * 109.47051 * 295.10774 * 1 2 3 27 27 H 0.97003 * 119.99200 * 179.97438 * 6 5 3 28 28 H 1.08998 * 109.80781 * 183.69651 * 16 15 13 29 29 H 1.08998 * 109.81039 * 304.51815 * 16 15 13 30 30 H 1.08997 * 108.65663 * 68.35865 * 17 16 15 31 31 H 1.08997 * 108.65182 * 186.21956 * 17 16 15 32 32 H 1.07995 * 119.23346 * 0.71566 * 19 18 17 33 33 H 1.07989 * 120.24328 * 180.02562 * 20 19 18 34 34 H 1.08002 * 120.37105 * 179.64709 * 21 20 19 35 35 H 1.08000 * 119.33109 * 180.08733 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.2271 1.1891 -0.0852 5 6 1.4602 2.3882 0.1096 6 7 0.1624 2.3834 0.3164 7 14 2.3767 4.0092 -0.0371 8 1 3.8194 3.7429 -0.2675 9 1 1.8289 4.7862 -1.1778 10 1 2.2105 4.7870 1.2170 11 6 2.1389 -1.1673 0.0005 12 8 3.3474 -1.1698 0.1039 13 6 1.3908 -2.4692 -0.1273 14 1 0.4432 -2.2921 -0.6360 15 16 1.0678 -3.1403 1.5261 16 6 0.5703 -4.8423 1.1128 17 6 1.7684 -5.5346 0.4803 18 6 2.3633 -4.7752 -0.6712 19 6 3.1468 -5.5507 -1.5337 20 6 3.7728 -5.0001 -2.6265 21 6 3.6301 -3.6489 -2.8844 22 6 2.8561 -2.8822 -2.0444 23 6 2.2138 -3.4402 -0.9372 24 1 -0.3634 -1.0239 -0.0877 25 1 -0.3633 0.5879 -0.8429 26 1 -0.3633 0.4360 0.9305 27 1 -0.3194 3.2218 0.3933 28 1 0.2742 -5.3709 2.0189 29 1 -0.2610 -4.8234 0.4081 30 1 2.5357 -5.6695 1.2427 31 1 1.4564 -6.5171 0.1262 32 1 3.2624 -6.6060 -1.3357 33 1 4.3722 -5.6179 -3.2786 34 1 4.1205 -3.2008 -3.7359 35 1 2.7426 -1.8272 -2.2454 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172933267.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:57 Heat of formation + Delta-G solvation = 12.327869 kcal Electronic energy + Delta-G solvation = -19426.544140 eV Core-core repulsion = 16516.380151 eV Total energy + Delta-G solvation = -2910.163989 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.70401 -38.17577 -34.81172 -34.29228 -32.36413 -31.48485 -29.52662 -27.72087 -26.14459 -24.48519 -23.52772 -22.20471 -20.43035 -19.05976 -16.99210 -16.39226 -16.27151 -16.21974 -15.14531 -14.96596 -14.56084 -14.39137 -14.12730 -13.55698 -13.20258 -12.87764 -12.79882 -12.58097 -12.28797 -12.01379 -11.67139 -11.54852 -11.20556 -11.04470 -11.03446 -10.73038 -10.57365 -10.35411 -10.16393 -9.63486 -9.11551 -8.58866 -8.43705 -8.25260 -7.90503 -7.33428 -6.30716 -3.86109 1.53424 1.64553 1.88086 2.71143 3.13357 3.22136 3.29356 3.91434 4.02904 4.09045 4.67503 4.76597 4.81319 5.00446 5.15969 5.18241 5.24768 5.32151 5.47195 5.55490 5.63899 5.71702 5.75757 5.92064 5.92679 6.19482 6.31464 6.41184 6.67555 6.75851 6.86679 7.03178 7.24815 7.38197 7.50836 7.98059 8.41409 9.11884 9.34933 9.89840 10.62746 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.005967 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.736502 B = 4690.982830 C = 5486.864201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.433 5.433 3 C -0.296 4.296 4 H 0.107 0.893 5 C 0.027 3.973 6 N -0.881 5.881 7 Si 0.933 3.067 8 H -0.267 1.267 9 H -0.280 1.280 10 H -0.280 1.280 11 C 0.453 3.547 12 O -0.575 6.575 13 C -0.031 4.031 14 H 0.110 0.890 15 S -0.218 6.218 16 C -0.093 4.093 17 C -0.076 4.076 18 C -0.075 4.075 19 C -0.131 4.131 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.080 4.080 23 C -0.050 4.050 24 H 0.026 0.974 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.267 0.733 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 -13.389 -3.487 13.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.151 5.151 3 C -0.424 4.424 4 H 0.125 0.875 5 C -0.175 4.175 6 N -0.522 5.522 7 Si 0.759 3.241 8 H -0.191 1.191 9 H -0.206 1.206 10 H -0.206 1.206 11 C 0.238 3.762 12 O -0.459 6.459 13 C -0.163 4.163 14 H 0.128 0.872 15 S 0.011 5.989 16 C -0.242 4.242 17 C -0.114 4.114 18 C -0.076 4.076 19 C -0.149 4.149 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.100 4.100 23 C -0.052 4.052 24 H 0.044 0.956 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.027 -12.710 -2.353 12.967 hybrid contribution 0.059 0.358 -1.202 1.255 sum -0.967 -12.353 -3.555 12.890 Atomic orbital electron populations 1.21916 0.80125 0.96531 1.04842 1.43718 1.06198 1.04542 1.60645 1.19909 0.93607 0.81728 1.47203 0.87541 1.25364 0.95888 0.99891 0.96399 1.70160 1.06959 1.27290 1.47805 0.85742 0.79652 0.80751 0.77909 1.19139 1.20570 1.20556 1.18695 0.87649 0.82949 0.86876 1.90553 1.13493 1.85874 1.56025 1.22279 1.01825 0.96968 0.95203 0.87217 1.87355 1.88238 1.11262 1.12067 1.23308 1.00163 0.96288 1.04399 1.20363 0.97030 0.97912 0.96092 1.19317 0.99078 0.92505 0.96660 1.21177 0.98850 0.99265 0.95601 1.20908 0.99908 0.95336 0.97707 1.20986 0.99493 0.94047 0.99890 1.21365 0.95249 1.00074 0.93266 1.19041 0.98601 0.91981 0.95531 0.95579 0.91723 0.90081 0.92216 0.87354 0.89741 0.89664 0.90316 0.86569 0.86345 0.86079 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.52 8.72 59.85 0.52 3.04 16 2 N -0.43 -11.24 3.03 -122.19 -0.37 -11.61 16 3 C -0.30 -8.23 9.55 -14.93 -0.14 -8.38 16 4 H 0.11 3.10 7.20 -52.49 -0.38 2.73 16 5 C 0.03 0.71 5.42 -17.46 -0.09 0.62 16 6 N -0.88 -22.96 9.53 55.50 0.53 -22.43 16 7 Si 0.93 20.64 29.56 -169.99 -5.02 15.62 16 8 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 9 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 C 0.45 11.27 5.28 -10.98 -0.06 11.21 16 12 O -0.57 -16.25 15.23 5.55 0.08 -16.16 16 13 C -0.03 -0.63 2.27 -28.95 -0.07 -0.70 16 14 H 0.11 2.06 5.91 -51.92 -0.31 1.76 16 15 S -0.22 -4.02 21.67 -107.50 -2.33 -6.35 16 16 C -0.09 -1.20 6.57 36.72 0.24 -0.95 16 17 C -0.08 -0.95 5.29 -28.55 -0.15 -1.10 16 18 C -0.08 -1.18 5.74 -104.68 -0.60 -1.78 16 19 C -0.13 -1.79 9.39 -39.22 -0.37 -2.16 16 20 C -0.12 -1.64 10.05 -39.85 -0.40 -2.04 16 21 C -0.13 -1.96 10.07 -39.80 -0.40 -2.36 16 22 C -0.08 -1.50 8.29 -39.30 -0.33 -1.83 16 23 C -0.05 -0.93 5.21 -104.49 -0.54 -1.47 16 24 H 0.03 0.52 5.24 -51.93 -0.27 0.24 16 25 H 0.06 1.53 7.24 -51.93 -0.38 1.15 16 26 H 0.08 2.00 6.89 -51.93 -0.36 1.64 16 27 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 28 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.08 0.76 7.97 -51.93 -0.41 0.34 16 32 H 0.12 1.24 7.94 -52.49 -0.42 0.82 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.12 2.54 6.88 -52.49 -0.36 2.18 16 LS Contribution 296.31 15.07 4.47 4.47 Total: -1.00 -31.10 296.31 -9.16 -40.26 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.13 Total: 4.12 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.39 Total: -7.91 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.16 Total: -34.04 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.08 Total: -16.16 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -4.02 SS G_CDS: -2.33 Total: -6.35 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.10 -9.16 -40.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172933267.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.590 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds