Wall clock time and date at job start Mon Mar 30 2020 02:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46543 * 2 1 4 4 C 1.50702 * 109.47366 * 119.99371 * 2 1 3 5 5 H 1.08000 * 119.99573 * 120.00105 * 4 2 1 6 6 C 1.37879 * 120.00280 * 300.00704 * 4 2 1 7 7 N 1.31517 * 119.99984 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99762 * 359.97438 * 6 4 2 9 9 H 1.48508 * 109.47156 * 90.00126 * 8 6 4 10 10 H 1.48501 * 109.46961 * 209.99882 * 8 6 4 11 11 H 1.48497 * 109.47228 * 329.99941 * 8 6 4 12 12 N 1.46493 * 109.47464 * 239.99863 * 2 1 3 13 13 C 1.34778 * 119.99888 * 84.99879 * 12 2 1 14 14 O 1.21809 * 120.00221 * 359.97438 * 13 12 2 15 15 C 1.41314 * 120.00298 * 180.02562 * 13 12 2 16 16 C 1.35087 * 120.00209 * 180.02562 * 15 13 12 17 17 S 1.76193 * 120.00014 * 359.97438 * 16 15 13 18 18 C 1.76206 * 99.99928 * 174.81345 * 17 16 15 19 19 C 1.38946 * 120.07269 * 273.86104 * 18 17 16 20 20 C 1.38091 * 119.91748 * 179.76705 * 19 18 17 21 21 C 1.38293 * 120.07647 * 0.48579 * 20 19 18 22 22 C 1.38300 * 120.15557 * 359.76979 * 21 20 19 23 23 C 1.38086 * 120.07669 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.46543 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47118 * 60.00516 * 1 2 3 26 26 H 1.08997 * 109.47268 * 299.99948 * 1 2 3 27 27 H 0.96991 * 119.99707 * 179.97438 * 7 6 4 28 28 H 0.96999 * 120.00461 * 264.99811 * 12 2 1 29 29 H 1.08000 * 119.99659 * 359.97438 * 15 13 12 30 30 H 1.08003 * 119.99776 * 180.02562 * 16 15 13 31 31 H 1.07997 * 120.04043 * 359.97438 * 19 18 17 32 32 H 1.08002 * 119.95939 * 180.25716 * 20 19 18 33 33 H 1.08010 * 119.92243 * 179.74771 * 21 20 19 34 34 H 1.08000 * 119.95905 * 179.97438 * 22 21 20 35 35 H 1.08003 * 120.03627 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6534 -1.5883 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 2.1373 -0.8594 3.5567 8 14 0.6257 1.2799 2.6541 9 1 -0.8022 0.8744 2.6993 10 1 0.9770 1.9955 3.9070 11 1 0.8489 2.1773 1.4922 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8570 1.1635 -2.4119 15 6 2.6177 -0.6845 -3.5110 16 6 2.7473 -0.0104 -4.6745 17 16 2.3288 1.6993 -4.7535 18 6 2.8317 2.0615 -6.4029 19 6 4.1494 2.4142 -6.6675 20 6 4.5412 2.6928 -7.9620 21 6 3.6216 2.6307 -8.9930 22 6 2.3080 2.2851 -8.7325 23 6 1.9105 2.0002 -7.4411 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 1.9033 -0.5278 4.4375 28 1 2.2492 -1.6317 -1.1525 29 1 2.8747 -1.7323 -3.4625 30 1 3.1065 -0.5198 -5.5565 31 1 4.8670 2.4672 -5.8621 32 1 5.5662 2.9629 -8.1690 33 1 3.9298 2.8531 -10.0040 34 1 1.5924 2.2381 -9.5400 35 1 0.8845 1.7308 -7.2384 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255605122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:01 Heat of formation + Delta-G solvation = 16.206995 kcal Electronic energy + Delta-G solvation = -17925.548432 eV Core-core repulsion = 15015.552655 eV Total energy + Delta-G solvation = -2909.995777 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.32029 -39.04985 -35.13861 -32.74886 -32.27394 -31.19083 -31.13021 -29.79038 -25.19879 -24.09330 -22.82682 -22.78413 -20.51815 -19.58035 -17.95548 -17.57743 -16.30919 -16.07251 -15.53450 -15.19064 -14.84533 -14.31760 -14.18103 -13.94576 -13.67627 -13.32735 -12.97339 -12.88884 -12.44333 -12.15914 -11.79062 -11.47931 -11.43230 -11.30628 -10.86022 -10.61893 -10.37547 -10.14190 -9.62770 -9.23307 -9.20116 -9.19651 -8.73582 -8.66722 -8.23519 -7.33404 -6.18255 -4.20514 0.76631 1.14357 1.30096 1.90315 2.66313 3.26218 3.38131 3.43456 3.53982 3.85376 4.20098 4.34809 4.64396 4.71327 4.82414 5.11873 5.16921 5.20641 5.26204 5.51356 5.59428 5.75417 6.05977 6.06423 6.10182 6.16024 6.20289 6.36274 6.43534 6.60605 6.66285 6.90734 7.24379 7.33460 7.55920 8.18111 8.56660 8.78216 8.94704 9.42954 10.94045 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.043327 B = 0.003361 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.091758 B = 8328.355759 C = 8457.329846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.236 3.764 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.261 1.261 12 N -0.694 5.694 13 C 0.526 3.474 14 O -0.537 6.537 15 C -0.205 4.205 16 C -0.116 4.116 17 S 0.126 5.874 18 C -0.203 4.203 19 C -0.069 4.069 20 C -0.133 4.133 21 C -0.100 4.100 22 C -0.134 4.134 23 C -0.070 4.070 24 H 0.052 0.948 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.267 0.733 28 H 0.396 0.604 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 3.210 -23.450 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.340 5.340 13 C 0.316 3.684 14 O -0.422 6.422 15 C -0.241 4.241 16 C -0.251 4.251 17 S 0.375 5.625 18 C -0.312 4.312 19 C -0.089 4.089 20 C -0.153 4.153 21 C -0.119 4.119 22 C -0.153 4.153 23 C -0.090 4.090 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.230 0.770 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.258 4.862 -22.487 23.041 hybrid contribution 0.182 -0.798 -0.807 1.149 sum 1.440 4.065 -23.294 23.689 Atomic orbital electron populations 1.22442 0.99305 1.00803 0.99313 1.19097 0.90123 0.94737 0.82854 0.93252 1.21062 1.33175 1.14397 0.88609 0.90238 1.24838 0.95510 0.96727 0.95520 1.69872 1.45029 1.40158 0.98036 0.86868 0.80489 0.83636 0.77451 1.20337 1.22206 1.18551 1.46046 1.64526 1.13676 1.09796 1.17132 0.79737 0.87123 0.84445 1.90562 1.52421 1.15861 1.83351 1.21647 1.08220 1.01338 0.92913 1.26146 0.99195 0.99558 1.00241 1.86786 1.72446 1.02749 1.00547 1.23588 0.96934 1.06889 1.03761 1.21620 0.95039 0.95354 0.96903 1.21251 0.99824 1.01213 0.92972 1.21301 0.93540 0.97847 0.99172 1.21244 0.96381 1.00859 0.96852 1.21601 0.99252 0.96181 0.92012 0.92897 0.94454 0.93511 0.92320 0.77001 0.84646 0.84475 0.85226 0.85748 0.85956 0.85794 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 8.96 37.16 0.33 -3.30 16 2 C 0.24 5.68 2.15 -69.08 -0.15 5.53 16 3 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 4 C -0.53 -14.59 9.31 -34.44 -0.32 -14.91 16 5 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 8 Si 0.89 22.00 24.37 -169.99 -4.14 17.85 16 9 H -0.28 -6.64 6.87 56.52 0.39 -6.26 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 12 N -0.69 -13.96 5.06 -57.92 -0.29 -14.25 16 13 C 0.53 10.06 7.50 -15.09 -0.11 9.94 16 14 O -0.54 -11.79 12.99 5.09 0.07 -11.72 16 15 C -0.20 -2.98 9.83 -39.53 -0.39 -3.37 16 16 C -0.12 -1.54 10.05 29.61 0.30 -1.25 16 17 S 0.13 1.88 18.58 -107.50 -2.00 -0.12 16 18 C -0.20 -2.47 5.45 -39.06 -0.21 -2.68 16 19 C -0.07 -0.76 9.79 -39.37 -0.39 -1.14 16 20 C -0.13 -1.21 10.04 -39.62 -0.40 -1.60 16 21 C -0.10 -0.84 10.04 -39.54 -0.40 -1.24 16 22 C -0.13 -1.19 10.04 -39.61 -0.40 -1.59 16 23 C -0.07 -0.75 9.79 -39.38 -0.39 -1.14 16 24 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 27 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.40 6.99 8.50 -40.82 -0.35 6.64 16 29 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.14 1.44 8.02 -52.48 -0.42 1.02 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 34 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 LS Contribution 311.21 15.07 4.69 4.69 Total: -1.00 -31.94 311.21 -7.78 -39.73 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.26 Total: 4.39 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -2.61 Total: -14.64 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.48 Total: -40.17 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.07 Total: -11.72 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.85 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.00 Total: -0.12 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.94 -7.78 -39.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255605122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.932 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds