Wall clock time and date at job start Mon Mar 30 2020 02:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46543 * 2 1 4 4 C 1.50702 * 109.47366 * 119.99371 * 2 1 3 5 5 H 1.08000 * 119.99573 * 120.00105 * 4 2 1 6 6 C 1.37879 * 120.00280 * 300.00704 * 4 2 1 7 7 N 1.31517 * 119.99984 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99762 * 359.97438 * 6 4 2 9 9 H 1.48508 * 109.47156 * 90.00126 * 8 6 4 10 10 H 1.48501 * 109.46961 * 209.99882 * 8 6 4 11 11 H 1.48497 * 109.47228 * 329.99941 * 8 6 4 12 12 N 1.46493 * 109.47464 * 239.99863 * 2 1 3 13 13 C 1.34778 * 119.99888 * 84.99879 * 12 2 1 14 14 O 1.21809 * 120.00221 * 359.97438 * 13 12 2 15 15 C 1.41314 * 120.00298 * 180.02562 * 13 12 2 16 16 C 1.35087 * 120.00209 * 180.02562 * 15 13 12 17 17 S 1.76193 * 120.00014 * 359.97438 * 16 15 13 18 18 C 1.76206 * 99.99928 * 174.81345 * 17 16 15 19 19 C 1.38946 * 120.07269 * 273.86104 * 18 17 16 20 20 C 1.38091 * 119.91748 * 179.76705 * 19 18 17 21 21 C 1.38293 * 120.07647 * 0.48579 * 20 19 18 22 22 C 1.38300 * 120.15557 * 359.76979 * 21 20 19 23 23 C 1.38086 * 120.07669 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.46543 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47118 * 60.00516 * 1 2 3 26 26 H 1.08997 * 109.47268 * 299.99948 * 1 2 3 27 27 H 0.96991 * 119.99707 * 179.97438 * 7 6 4 28 28 H 0.96999 * 120.00461 * 264.99811 * 12 2 1 29 29 H 1.08000 * 119.99659 * 359.97438 * 15 13 12 30 30 H 1.08003 * 119.99776 * 180.02562 * 16 15 13 31 31 H 1.07997 * 120.04043 * 359.97438 * 19 18 17 32 32 H 1.08002 * 119.95939 * 180.25716 * 20 19 18 33 33 H 1.08010 * 119.92243 * 179.74771 * 21 20 19 34 34 H 1.08000 * 119.95905 * 179.97438 * 22 21 20 35 35 H 1.08003 * 120.03627 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6534 -1.5883 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 2.1373 -0.8594 3.5567 8 14 0.6257 1.2799 2.6541 9 1 -0.8022 0.8744 2.6993 10 1 0.9770 1.9955 3.9070 11 1 0.8489 2.1773 1.4922 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8570 1.1635 -2.4119 15 6 2.6177 -0.6845 -3.5110 16 6 2.7473 -0.0104 -4.6745 17 16 2.3288 1.6993 -4.7535 18 6 2.8317 2.0615 -6.4029 19 6 4.1494 2.4142 -6.6675 20 6 4.5412 2.6928 -7.9620 21 6 3.6216 2.6307 -8.9930 22 6 2.3080 2.2851 -8.7325 23 6 1.9105 2.0002 -7.4411 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 1.9033 -0.5278 4.4375 28 1 2.2492 -1.6317 -1.1525 29 1 2.8747 -1.7323 -3.4625 30 1 3.1065 -0.5198 -5.5565 31 1 4.8670 2.4672 -5.8621 32 1 5.5662 2.9629 -8.1690 33 1 3.9298 2.8531 -10.0040 34 1 1.5924 2.2381 -9.5400 35 1 0.8845 1.7308 -7.2384 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255605122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:01 Heat of formation + Delta-G solvation = -4.296187 kcal Electronic energy + Delta-G solvation = -17926.437516 eV Core-core repulsion = 15015.552655 eV Total energy + Delta-G solvation = -2910.884862 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81624 -39.80715 -36.93838 -34.39970 -33.90263 -31.91386 -31.89543 -31.56103 -27.22462 -25.47543 -23.70475 -23.50953 -22.20435 -21.07437 -19.41049 -18.47922 -18.17195 -17.44498 -16.82028 -16.27791 -16.00593 -15.80792 -15.44811 -15.10977 -14.87228 -14.72997 -14.37250 -14.09681 -13.93987 -13.59396 -13.36253 -13.20571 -12.77726 -12.38395 -12.15428 -12.12188 -11.86361 -11.53405 -11.51121 -11.25903 -10.86129 -10.33614 -9.93314 -9.91221 -9.72184 -8.55161 -8.37492 -6.43056 -0.04408 0.13238 0.41501 0.89866 1.27968 1.36153 1.46288 1.66328 2.27188 2.44546 2.69241 2.79276 2.99149 3.94596 3.99313 4.07938 4.20075 4.44442 4.51053 4.52706 4.54295 4.59353 4.73241 4.79469 4.92553 4.93447 5.06628 5.08679 5.36585 5.39766 5.41096 5.46160 5.50561 5.69243 5.96606 6.16369 6.58731 6.92310 7.20212 7.47868 8.77918 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.043327 B = 0.003361 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.091758 B = 8328.355759 C = 8457.329846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.243 3.757 3 H 0.022 0.978 4 C -0.533 4.533 5 H 0.056 0.944 6 C 0.028 3.972 7 N -0.935 5.935 8 Si 0.940 3.060 9 H -0.259 1.259 10 H -0.292 1.292 11 H -0.263 1.263 12 N -0.697 5.697 13 C 0.522 3.478 14 O -0.572 6.572 15 C -0.220 4.220 16 C -0.088 4.088 17 S 0.064 5.936 18 C -0.210 4.210 19 C -0.085 4.085 20 C -0.133 4.133 21 C -0.096 4.096 22 C -0.133 4.133 23 C -0.083 4.083 24 H 0.064 0.936 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.270 0.730 28 H 0.408 0.592 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 3.439 -26.602 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.138 3.862 3 H 0.040 0.960 4 C -0.571 4.571 5 H 0.074 0.926 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.767 3.233 9 H -0.185 1.185 10 H -0.219 1.219 11 H -0.187 1.187 12 N -0.346 5.346 13 C 0.314 3.686 14 O -0.458 6.458 15 C -0.255 4.255 16 C -0.223 4.223 17 S 0.314 5.686 18 C -0.320 4.320 19 C -0.106 4.106 20 C -0.153 4.153 21 C -0.114 4.114 22 C -0.152 4.152 23 C -0.104 4.104 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.243 0.757 29 H 0.188 0.812 30 H 0.188 0.812 31 H 0.145 0.855 32 H 0.166 0.834 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.168 5.071 -25.657 26.179 hybrid contribution 0.307 -0.822 -0.036 0.879 sum 1.475 4.248 -25.693 26.084 Atomic orbital electron populations 1.22330 0.97909 1.01580 0.99367 1.18720 0.91123 0.93159 0.83245 0.95980 1.21292 1.32253 1.13555 0.90025 0.92560 1.25563 0.96864 0.99363 0.95339 1.69977 1.46802 1.41972 0.98649 0.85993 0.79777 0.80362 0.77181 1.18513 1.21939 1.18745 1.45880 1.65319 1.14200 1.09165 1.17772 0.78993 0.86825 0.85032 1.90582 1.53616 1.17390 1.84258 1.21619 1.09689 1.02868 0.91354 1.26415 0.96824 0.98251 1.00850 1.86981 1.72699 1.04949 1.03982 1.23276 0.97909 1.09073 1.01721 1.21707 0.94584 0.96228 0.98042 1.21554 1.01280 1.00280 0.92152 1.21727 0.93034 0.96115 1.00487 1.21572 0.97343 0.99694 0.96589 1.21726 0.99233 0.96794 0.92605 0.91743 0.93572 0.94167 0.92058 0.75693 0.81197 0.81218 0.85521 0.83399 0.82809 0.83198 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.86 8.96 71.98 0.65 -6.21 16 2 C 0.24 11.80 2.15 44.25 0.10 11.89 16 3 H 0.02 1.21 6.63 -2.39 -0.02 1.19 16 4 C -0.53 -29.62 9.31 25.60 0.24 -29.38 16 5 H 0.06 3.31 7.98 -2.91 -0.02 3.29 16 6 C 0.03 1.62 5.45 84.65 0.46 2.08 16 7 N -0.93 -56.80 13.96 21.45 0.30 -56.50 16 8 Si 0.94 45.59 24.37 68.60 1.67 47.27 16 9 H -0.26 -11.81 6.87 99.48 0.68 -11.13 16 10 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 11 H -0.26 -12.74 6.53 99.48 0.65 -12.09 16 12 N -0.70 -28.09 5.06 -455.32 -2.30 -30.39 16 13 C 0.52 19.88 7.50 85.00 0.64 20.52 16 14 O -0.57 -25.50 12.99 -4.70 -0.06 -25.57 16 15 C -0.22 -6.07 9.83 22.30 0.22 -5.85 16 16 C -0.09 -2.20 10.05 67.09 0.67 -1.53 16 17 S 0.06 1.90 18.58 -56.49 -1.05 0.85 16 18 C -0.21 -4.90 5.45 22.61 0.12 -4.77 16 19 C -0.09 -1.75 9.79 22.40 0.22 -1.53 16 20 C -0.13 -2.03 10.04 22.25 0.22 -1.80 16 21 C -0.10 -1.24 10.04 22.30 0.22 -1.01 16 22 C -0.13 -1.93 10.04 22.25 0.22 -1.71 16 23 C -0.08 -1.64 9.79 22.40 0.22 -1.42 16 24 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.04 1.83 3.27 -2.39 -0.01 1.82 16 27 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.41 14.28 8.50 -92.71 -0.79 13.50 16 29 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.17 3.07 8.02 -2.91 -0.02 3.04 16 31 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 34 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 35 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -70.35 311.21 2.99 -67.36 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.23 Total: 17.71 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 4.20 Total: -20.73 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -2.00 Total: -86.89 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.06 Total: -25.57 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.67 Total: 47.27 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.05 Total: 0.85 kcal Total: -70.35 2.99 -67.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255605122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.065 kcal (2) G-P(sol) polarization free energy of solvation -70.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds