Wall clock time and date at job start Mon Mar 30 2020 01:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99611 * 2 1 4 4 H 1.48501 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47264 * 300.00208 * 3 2 1 6 6 H 1.48505 * 109.47431 * 59.99942 * 3 2 1 7 7 C 1.37873 * 120.00478 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00308 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00000 * 0.02562 * 7 2 1 10 10 S 1.81400 * 109.47310 * 179.97438 * 9 7 2 11 11 C 1.76199 * 103.00016 * 179.97438 * 10 9 7 12 12 C 1.38782 * 120.10746 * 0.02621 * 11 10 9 13 13 C 1.38191 * 119.99201 * 179.97438 * 12 11 10 14 14 C 1.38304 * 120.20073 * 359.97438 * 13 12 11 15 15 C 1.38255 * 120.20735 * 0.02562 * 14 13 12 16 16 C 1.38648 * 120.00939 * 359.97438 * 15 14 13 17 17 N 1.40133 * 120.10198 * 179.97438 * 16 15 14 18 18 C 1.34782 * 119.99982 * 24.81761 * 17 16 15 19 19 O 1.21298 * 119.99857 * 5.53008 * 18 17 16 20 20 C 1.50697 * 120.00402 * 185.52976 * 18 17 16 21 21 C 1.53000 * 117.50004 * 248.74905 * 20 18 17 22 22 C 1.52995 * 117.50356 * 180.08770 * 20 18 17 23 23 H 0.97000 * 120.00532 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47323 * 60.00019 * 9 7 2 25 25 H 1.08998 * 109.47309 * 299.99952 * 9 7 2 26 26 H 1.08006 * 120.00370 * 359.97438 * 12 11 10 27 27 H 1.08001 * 119.90603 * 180.27597 * 13 12 11 28 28 H 1.07995 * 119.89710 * 179.97438 * 14 13 12 29 29 H 1.07993 * 119.99566 * 180.02562 * 15 14 13 30 30 H 0.97004 * 120.00588 * 204.81975 * 17 16 15 31 31 H 1.09006 * 115.54904 * 34.41566 * 20 18 17 32 32 H 1.09008 * 117.49510 * 0.02562 * 21 20 18 33 33 H 1.09005 * 117.49748 * 145.01528 * 21 20 18 34 34 H 1.08996 * 117.50168 * 214.98216 * 22 20 18 35 35 H 1.09004 * 117.49641 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 16 2.4301 -3.8778 -0.0029 11 6 1.3828 -5.2948 -0.0034 12 6 0.0035 -5.1410 -0.0034 13 6 -0.8156 -6.2540 -0.0043 14 6 -0.2653 -7.5228 -0.0058 15 6 1.1076 -7.6856 -0.0058 16 6 1.9376 -6.5750 -0.0049 17 7 3.3294 -6.7377 -0.0044 18 6 3.8760 -7.8680 -0.4947 19 8 3.1725 -8.7004 -1.0272 20 6 5.3610 -8.0977 -0.3813 21 6 6.1807 -8.0703 -1.6729 22 6 5.9208 -9.3991 -0.9590 23 1 -0.4851 0.8400 -0.0004 24 1 0.6249 -2.5563 -0.8919 25 1 0.6242 -2.5575 0.8880 26 1 -0.4296 -4.1516 -0.0027 27 1 -1.8888 -6.1327 -0.0088 28 1 -0.9101 -8.3892 -0.0061 29 1 1.5337 -8.6779 -0.0074 30 1 3.8996 -6.0369 0.3488 31 1 5.8300 -7.7047 0.5208 32 1 5.6458 -7.8857 -2.6046 33 1 7.1891 -7.6597 -1.6204 34 1 6.7581 -9.8623 -0.4371 35 1 5.2148 -10.0895 -1.4207 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264559705.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:13 Heat of formation + Delta-G solvation = 8.132904 kcal Electronic energy + Delta-G solvation = -18182.874303 eV Core-core repulsion = 15272.528407 eV Total energy + Delta-G solvation = -2910.345896 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53778 -38.43341 -36.28999 -34.64672 -33.29165 -30.76389 -29.53750 -28.62738 -24.97267 -23.39864 -22.73956 -22.64184 -21.60578 -19.96623 -17.99736 -17.38386 -16.68614 -16.27965 -15.43318 -15.14336 -15.06480 -14.66993 -14.25866 -13.96801 -13.37618 -13.03219 -12.98705 -12.68966 -12.41224 -12.26776 -11.83331 -11.73499 -11.25317 -10.99970 -10.83442 -10.77603 -10.75623 -10.39204 -10.08989 -9.71989 -9.67936 -9.24179 -9.17930 -8.67805 -8.00506 -6.61635 -6.30881 -4.36828 1.46888 1.67873 2.35394 2.50098 3.04430 3.18391 3.26122 3.30790 3.57487 3.64983 4.10114 4.25905 4.48895 4.59102 4.67014 4.91595 5.06874 5.27022 5.32627 5.39072 5.52169 5.59091 5.71516 5.80166 5.82309 5.90512 6.20264 6.45449 6.55533 6.70640 6.85063 6.91040 6.94516 7.27660 7.48221 7.61968 7.84681 8.11843 8.64379 9.27506 10.80330 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.004503 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.209066 B = 6216.654817 C = 7547.455755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.519 4.519 8 H 0.069 0.931 9 C 0.077 3.923 10 S -0.170 6.170 11 C -0.097 4.097 12 C -0.114 4.114 13 C -0.118 4.118 14 C -0.122 4.122 15 C -0.119 4.119 16 C 0.150 3.850 17 N -0.655 5.655 18 C 0.543 3.457 19 O -0.526 6.526 20 C -0.195 4.195 21 C -0.151 4.151 22 C -0.146 4.146 23 H 0.267 0.733 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.135 0.865 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.143 0.857 30 H 0.415 0.585 31 H 0.127 0.873 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.088 -14.829 0.416 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.559 4.559 8 H 0.087 0.913 9 C -0.070 4.070 10 S 0.076 5.924 11 C -0.212 4.212 12 C -0.139 4.139 13 C -0.139 4.139 14 C -0.144 4.144 15 C -0.140 4.140 16 C 0.049 3.951 17 N -0.299 5.299 18 C 0.331 3.669 19 O -0.403 6.403 20 C -0.217 4.217 21 C -0.188 4.188 22 C -0.184 4.184 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.153 0.847 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.160 0.840 30 H 0.252 0.748 31 H 0.145 0.855 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.753 -15.117 0.052 16.990 hybrid contribution -0.841 1.356 0.264 1.618 sum 6.911 -13.761 0.315 15.403 Atomic orbital electron populations 1.69948 1.06160 1.27517 1.48974 1.24949 0.94996 0.99337 0.94348 0.86269 0.80023 0.82350 0.77865 1.19382 1.20620 1.20612 1.20644 0.93488 0.88496 1.53233 0.91294 1.21374 0.94154 0.90490 1.00935 1.85021 1.18406 0.98254 1.90767 1.21812 0.97477 0.96030 1.05873 1.21229 0.91548 1.00058 1.01074 1.21034 0.99518 0.92281 1.01055 1.20948 0.94372 0.97053 1.01980 1.21204 0.93089 0.98306 1.01435 1.17242 0.82330 0.92261 1.03272 1.43473 1.05742 1.19942 1.60714 1.19771 0.89049 0.81051 0.77066 1.90646 1.62614 1.44548 1.42478 1.22174 0.92004 1.06554 1.00930 1.22984 1.00490 1.00806 0.94533 1.22970 1.02556 0.90422 1.02432 0.92331 0.93694 0.93696 0.84695 0.86090 0.86128 0.83971 0.74754 0.85491 0.88055 0.87553 0.87841 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.99 9.13 -34.44 -0.31 -14.31 16 8 H 0.07 1.84 7.71 -52.49 -0.40 1.44 16 9 C 0.08 1.92 4.09 36.00 0.15 2.07 16 10 S -0.17 -3.56 20.55 -107.50 -2.21 -5.77 16 11 C -0.10 -1.86 6.12 -38.90 -0.24 -2.10 16 12 C -0.11 -2.13 9.36 -39.40 -0.37 -2.50 16 13 C -0.12 -1.87 10.04 -39.57 -0.40 -2.27 16 14 C -0.12 -1.84 10.04 -39.55 -0.40 -2.23 16 15 C -0.12 -1.97 8.72 -39.42 -0.34 -2.31 16 16 C 0.15 2.63 6.44 -83.43 -0.54 2.09 16 17 N -0.66 -9.95 5.17 -9.71 -0.05 -10.00 16 18 C 0.54 7.73 7.42 -10.98 -0.08 7.65 16 19 O -0.53 -8.88 13.43 5.54 0.07 -8.81 16 20 C -0.20 -2.00 6.19 -91.78 -0.57 -2.57 16 21 C -0.15 -1.34 10.24 -26.69 -0.27 -1.62 16 22 C -0.15 -1.29 10.05 -26.70 -0.27 -1.56 16 23 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.04 1.17 7.75 -51.93 -0.40 0.77 16 25 H 0.04 1.16 7.75 -51.93 -0.40 0.76 16 26 H 0.14 2.65 5.88 -52.48 -0.31 2.35 16 27 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.14 2.33 5.78 -52.49 -0.30 2.03 16 30 H 0.42 5.78 7.65 -40.82 -0.31 5.46 16 31 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.11 1.09 7.67 -51.93 -0.40 0.70 16 LS Contribution 313.77 15.07 4.73 4.73 Total: -1.00 -29.92 313.77 -9.68 -39.60 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.20 Total: 6.78 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -3.74 Total: -17.90 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.69 Total: -34.23 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -2.21 Total: -5.77 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.92 -9.68 -39.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264559705.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.731 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds