Wall clock time and date at job start Mon Mar 30 2020 01:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38304 * 120.08881 * 2 1 4 4 C 1.37836 * 120.22168 * 180.23470 * 3 2 1 5 5 C 1.39624 * 120.28835 * 359.51158 * 4 3 2 6 6 C 1.38562 * 119.04129 * 0.47751 * 5 4 3 7 7 C 1.38176 * 120.47087 * 359.76063 * 6 5 4 8 8 C 1.51223 * 108.55784 * 179.75073 * 6 5 4 9 9 C 1.53736 * 104.58133 * 0.02562 * 8 6 5 10 10 N 1.39835 * 129.33929 * 180.18765 * 5 4 3 11 11 C 1.34777 * 124.97817 * 0.24057 * 10 5 4 12 12 O 1.21286 * 119.99733 * 0.02562 * 11 10 5 13 13 C 1.50700 * 119.99700 * 180.02562 * 11 10 5 14 14 S 1.81004 * 109.46695 * 179.97438 * 13 11 10 15 15 C 1.76201 * 100.00147 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99566 * 359.97438 * 15 14 13 17 17 C 1.38797 * 120.00273 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99967 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99962 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47036 * 60.00053 * 19 17 15 21 21 H 1.48497 * 109.46885 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47265 * 300.00138 * 19 17 15 23 23 H 1.09006 * 109.47130 * 89.99982 * 1 2 3 24 24 H 1.08996 * 109.47192 * 210.00010 * 1 2 3 25 25 H 1.09004 * 109.47159 * 330.00215 * 1 2 3 26 26 H 1.08002 * 119.88387 * 359.95062 * 3 2 1 27 27 H 1.08008 * 119.85507 * 179.72455 * 4 3 2 28 28 H 1.07998 * 119.92712 * 179.97438 * 7 6 5 29 29 H 1.09004 * 110.40900 * 118.78055 * 8 6 5 30 30 H 1.08996 * 110.41349 * 241.22578 * 8 6 5 31 31 H 1.09000 * 110.29968 * 118.93127 * 9 8 6 32 32 H 1.09006 * 110.29445 * 241.06631 * 9 8 6 33 33 H 1.08990 * 109.47376 * 299.99321 * 13 11 10 34 34 H 1.08996 * 109.47325 * 60.00116 * 13 11 10 35 35 H 0.96998 * 119.99701 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1967 0.0000 4 6 3.5787 1.1999 -0.0049 5 6 4.2857 -0.0041 0.0004 6 6 3.5817 -1.1976 0.0005 7 6 2.1999 -1.1960 0.0004 8 6 4.5720 -2.3405 0.0005 9 6 5.9499 -1.6587 0.0010 10 7 5.6672 -0.2209 0.0005 11 6 6.6016 0.7504 -0.0002 12 8 6.2651 1.9156 -0.0005 13 6 8.0645 0.3884 -0.0006 14 16 9.0600 1.9001 -0.0023 15 6 10.6775 1.2014 -0.0017 16 1 10.8022 0.1285 -0.0002 17 6 11.7913 2.0296 -0.0022 18 7 11.6392 3.3370 -0.0035 19 14 13.5061 1.2887 -0.0009 20 1 13.6833 0.4486 -1.2124 21 1 14.5158 2.3776 -0.0022 22 1 13.6825 0.4509 1.2125 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6599 2.1317 -0.0008 27 1 4.1142 2.1379 -0.0094 28 1 1.6601 -2.1314 0.0001 29 1 4.4492 -2.9498 0.8959 30 1 4.4492 -2.9498 -0.8949 31 1 6.5079 -1.9345 0.8958 32 1 6.5083 -1.9342 -0.8937 33 1 8.2942 -0.1972 0.8895 34 1 8.2935 -0.1980 -0.8904 35 1 12.4176 3.9158 -0.0034 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271529716.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:07 Heat of formation + Delta-G solvation = -10.652300 kcal Electronic energy + Delta-G solvation = -18275.219201 eV Core-core repulsion = 15364.058717 eV Total energy + Delta-G solvation = -2911.160484 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.03564 -38.54244 -36.60772 -32.48028 -32.32240 -32.05349 -29.42293 -29.06873 -26.38902 -25.49871 -23.41953 -22.69960 -20.76796 -19.62747 -17.76334 -16.92519 -16.34210 -16.27399 -15.05024 -14.84300 -14.75415 -14.48090 -14.40528 -13.78738 -13.72470 -13.30911 -12.70403 -12.66873 -12.57743 -12.49805 -12.25669 -12.14006 -11.72702 -11.61558 -11.09662 -11.06883 -10.93186 -10.80720 -9.97452 -9.89011 -9.52745 -9.10115 -8.80804 -8.32089 -7.64006 -6.56959 -6.25900 -3.97841 1.26821 1.38718 2.71084 2.88683 3.20970 3.21070 3.26387 3.47686 3.77061 4.14598 4.27533 4.42915 4.76670 4.90293 4.92037 4.99460 5.09445 5.12970 5.22056 5.34641 5.46337 5.46981 5.53402 5.62933 5.66198 5.73685 5.79973 5.81662 6.00272 6.03147 6.29477 6.41786 6.50948 6.60972 7.07358 7.44213 7.55019 8.29820 8.30909 9.19163 10.81532 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.043758 B = 0.003585 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.725876 B = 7808.027904 C = 8416.581666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.119 4.119 3 C -0.093 4.093 4 C -0.130 4.130 5 C 0.153 3.847 6 C -0.143 4.143 7 C -0.080 4.080 8 C -0.083 4.083 9 C 0.101 3.899 10 N -0.560 5.560 11 C 0.541 3.459 12 O -0.492 6.492 13 C -0.148 4.148 14 S -0.057 6.057 15 C -0.537 4.537 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.920 3.080 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.274 1.274 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.125 0.875 27 H 0.142 0.858 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.298 -12.248 -0.007 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.121 4.121 3 C -0.111 4.111 4 C -0.151 4.151 5 C 0.057 3.943 6 C -0.146 4.146 7 C -0.099 4.099 8 C -0.120 4.120 9 C -0.022 4.022 10 N -0.285 5.285 11 C 0.331 3.669 12 O -0.364 6.364 13 C -0.299 4.299 14 S 0.170 5.830 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.746 3.254 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.143 0.857 27 H 0.159 0.841 28 H 0.139 0.861 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.501 -10.268 -0.007 21.159 hybrid contribution 1.645 -1.842 -0.002 2.470 sum -16.856 -12.110 -0.010 20.755 Atomic orbital electron populations 1.20678 0.91136 1.02449 1.01979 1.19714 0.95889 0.92863 1.03592 1.20806 0.93148 0.97663 0.99498 1.21023 0.93792 0.97419 1.02835 1.18447 0.83192 0.94705 0.97941 1.19983 0.93778 0.93871 1.06941 1.20138 0.91507 0.97656 1.00558 1.21075 0.91092 0.96247 1.03607 1.22136 0.97900 0.78704 1.03412 1.46086 1.03784 1.07714 1.70939 1.20391 0.87230 0.84316 0.74981 1.90676 1.81734 1.18143 1.45878 1.23532 0.93105 1.08033 1.05202 1.85420 0.98895 1.01964 1.96759 1.22804 0.91129 0.95214 1.59379 0.90870 1.24997 0.99410 0.94700 0.94415 1.70002 1.31081 1.02578 1.46554 0.86203 0.81701 0.78652 0.78832 1.19895 1.20762 1.19890 0.91559 0.91879 0.91726 0.85680 0.84074 0.86084 0.89275 0.89270 0.89752 0.89761 0.88840 0.88841 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.02 36.00 0.36 -0.45 16 2 C -0.12 -1.30 5.88 -104.60 -0.62 -1.92 16 3 C -0.09 -1.16 9.68 -39.70 -0.38 -1.54 16 4 C -0.13 -2.02 9.46 -39.21 -0.37 -2.39 16 5 C 0.15 2.37 6.62 -83.57 -0.55 1.81 16 6 C -0.14 -1.75 6.23 -104.27 -0.65 -2.40 16 7 C -0.08 -0.86 9.70 -39.61 -0.38 -1.25 16 8 C -0.08 -0.77 6.94 -27.24 -0.19 -0.96 16 9 C 0.10 1.14 6.67 -3.64 -0.02 1.11 16 10 N -0.56 -8.94 3.13 -112.90 -0.35 -9.29 16 11 C 0.54 10.68 7.81 -10.99 -0.09 10.59 16 12 O -0.49 -11.33 14.03 5.55 0.08 -11.25 16 13 C -0.15 -3.02 5.30 36.01 0.19 -2.82 16 14 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 15 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 16 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.00 13.22 55.49 0.73 -25.26 16 19 Si 0.92 21.21 29.55 -169.99 -5.02 16.18 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 25 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 26 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.14 2.48 6.28 -52.48 -0.33 2.15 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 34 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 35 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 312.80 15.07 4.71 4.71 Total: -1.00 -33.80 312.80 -9.09 -42.89 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.52 Total: -1.15 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -2.51 Total: -13.07 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.38 Total: -34.55 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.80 -9.09 -42.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271529716.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.233 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds