Wall clock time and date at job start Mon Mar 30 2020 01:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38304 * 120.08881 * 2 1 4 4 C 1.37836 * 120.22168 * 180.23470 * 3 2 1 5 5 C 1.39624 * 120.28835 * 359.51158 * 4 3 2 6 6 C 1.38562 * 119.04129 * 0.47751 * 5 4 3 7 7 C 1.38176 * 120.47087 * 359.76063 * 6 5 4 8 8 C 1.51223 * 108.55784 * 179.75073 * 6 5 4 9 9 C 1.53736 * 104.58133 * 0.02562 * 8 6 5 10 10 N 1.39835 * 129.33929 * 180.18765 * 5 4 3 11 11 C 1.34777 * 124.97817 * 0.24057 * 10 5 4 12 12 O 1.21286 * 119.99733 * 0.02562 * 11 10 5 13 13 C 1.50700 * 119.99700 * 180.02562 * 11 10 5 14 14 S 1.81004 * 109.46695 * 179.97438 * 13 11 10 15 15 C 1.76201 * 100.00147 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99566 * 359.97438 * 15 14 13 17 17 C 1.38797 * 120.00273 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99967 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99962 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47036 * 60.00053 * 19 17 15 21 21 H 1.48497 * 109.46885 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47265 * 300.00138 * 19 17 15 23 23 H 1.09006 * 109.47130 * 89.99982 * 1 2 3 24 24 H 1.08996 * 109.47192 * 210.00010 * 1 2 3 25 25 H 1.09004 * 109.47159 * 330.00215 * 1 2 3 26 26 H 1.08002 * 119.88387 * 359.95062 * 3 2 1 27 27 H 1.08008 * 119.85507 * 179.72455 * 4 3 2 28 28 H 1.07998 * 119.92712 * 179.97438 * 7 6 5 29 29 H 1.09004 * 110.40900 * 118.78055 * 8 6 5 30 30 H 1.08996 * 110.41349 * 241.22578 * 8 6 5 31 31 H 1.09000 * 110.29968 * 118.93127 * 9 8 6 32 32 H 1.09006 * 110.29445 * 241.06631 * 9 8 6 33 33 H 1.08990 * 109.47376 * 299.99321 * 13 11 10 34 34 H 1.08996 * 109.47325 * 60.00116 * 13 11 10 35 35 H 0.96998 * 119.99701 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1967 0.0000 4 6 3.5787 1.1999 -0.0049 5 6 4.2857 -0.0041 0.0004 6 6 3.5817 -1.1976 0.0005 7 6 2.1999 -1.1960 0.0004 8 6 4.5720 -2.3405 0.0005 9 6 5.9499 -1.6587 0.0010 10 7 5.6672 -0.2209 0.0005 11 6 6.6016 0.7504 -0.0002 12 8 6.2651 1.9156 -0.0005 13 6 8.0645 0.3884 -0.0006 14 16 9.0600 1.9001 -0.0023 15 6 10.6775 1.2014 -0.0017 16 1 10.8022 0.1285 -0.0002 17 6 11.7913 2.0296 -0.0022 18 7 11.6392 3.3370 -0.0035 19 14 13.5061 1.2887 -0.0009 20 1 13.6833 0.4486 -1.2124 21 1 14.5158 2.3776 -0.0022 22 1 13.6825 0.4509 1.2125 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6599 2.1317 -0.0008 27 1 4.1142 2.1379 -0.0094 28 1 1.6601 -2.1314 0.0001 29 1 4.4492 -2.9498 0.8959 30 1 4.4492 -2.9498 -0.8949 31 1 6.5079 -1.9345 0.8958 32 1 6.5083 -1.9342 -0.8937 33 1 8.2942 -0.1972 0.8895 34 1 8.2935 -0.1980 -0.8904 35 1 12.4176 3.9158 -0.0034 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271529716.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:07 Heat of formation + Delta-G solvation = -30.973640 kcal Electronic energy + Delta-G solvation = -18276.100400 eV Core-core repulsion = 15364.058717 eV Total energy + Delta-G solvation = -2912.041683 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.15288 -39.82993 -37.70408 -34.61854 -33.42260 -33.02459 -30.82006 -30.01753 -27.78432 -27.17651 -24.44149 -23.71995 -21.70145 -20.94111 -19.65615 -18.33563 -17.47094 -17.42732 -16.90626 -16.24441 -15.94999 -15.83527 -15.71517 -15.11499 -14.57636 -14.46414 -14.36061 -13.90850 -13.67756 -13.41656 -13.19931 -13.04944 -12.89140 -12.85394 -12.83484 -12.67846 -12.44031 -11.88958 -11.79779 -11.15329 -11.02103 -10.98252 -10.35316 -9.75388 -8.76858 -8.67036 -8.37438 -6.17518 0.22138 0.40537 1.14385 1.40925 1.43334 1.48087 1.52985 1.89839 2.23915 2.78532 2.97017 3.07990 3.41812 3.58091 3.76262 4.05667 4.06653 4.10233 4.25171 4.25820 4.36430 4.37756 4.54211 4.63429 4.80693 4.91475 4.94084 5.01086 5.08207 5.18462 5.36082 5.38774 5.44154 5.50924 5.68577 6.08731 6.16593 6.20483 6.87619 7.03431 8.71780 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.043758 B = 0.003585 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.725876 B = 7808.027904 C = 8416.581666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.110 4.110 3 C -0.104 4.104 4 C -0.159 4.159 5 C 0.106 3.894 6 C -0.133 4.133 7 C -0.079 4.079 8 C -0.074 4.074 9 C 0.086 3.914 10 N -0.556 5.556 11 C 0.536 3.464 12 O -0.543 6.543 13 C -0.119 4.119 14 S -0.149 6.149 15 C -0.547 4.547 16 H 0.086 0.914 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 1.001 2.999 20 H -0.261 1.261 21 H -0.279 1.279 22 H -0.261 1.261 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.138 0.862 27 H 0.104 0.896 28 H 0.160 0.840 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.505 -16.349 0.002 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.111 4.111 3 C -0.122 4.122 4 C -0.179 4.179 5 C 0.012 3.988 6 C -0.136 4.136 7 C -0.098 4.098 8 C -0.110 4.110 9 C -0.035 4.035 10 N -0.280 5.280 11 C 0.326 3.674 12 O -0.420 6.420 13 C -0.270 4.270 14 S 0.078 5.922 15 C -0.694 4.694 16 H 0.104 0.896 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.822 3.178 20 H -0.185 1.185 21 H -0.204 1.204 22 H -0.185 1.185 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.155 0.845 27 H 0.122 0.878 28 H 0.177 0.823 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.756 -14.426 0.001 24.462 hybrid contribution 1.781 -0.630 -0.006 1.889 sum -17.975 -15.055 -0.005 23.447 Atomic orbital electron populations 1.20761 0.88387 1.03810 1.03147 1.20181 0.97824 0.92156 1.00948 1.21006 0.91999 0.99457 0.99782 1.20979 0.95265 0.96578 1.05122 1.18769 0.83096 0.95974 1.00996 1.20416 0.94716 0.93566 1.04854 1.20616 0.91027 0.99094 0.99020 1.21200 0.88342 0.95280 1.06225 1.22599 0.99975 0.75993 1.04896 1.46009 1.03637 1.08856 1.69535 1.20239 0.87582 0.84433 0.75188 1.90661 1.82333 1.20290 1.48690 1.23301 0.92429 1.04192 1.07029 1.85643 1.01274 1.08211 1.97088 1.23160 0.91183 0.95858 1.59245 0.89588 1.26170 1.04377 0.95038 0.93578 1.70180 1.32474 1.04391 1.47796 0.84965 0.75316 0.77878 0.79607 1.18513 1.20437 1.18502 0.90318 0.89839 0.91152 0.84466 0.87810 0.82257 0.86540 0.86540 0.88295 0.88311 0.86811 0.86814 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.02 71.23 0.71 -0.51 16 2 C -0.11 -2.13 5.88 -19.85 -0.12 -2.25 16 3 C -0.10 -2.62 9.68 22.19 0.21 -2.40 16 4 C -0.16 -5.27 9.46 22.51 0.21 -5.05 16 5 C 0.11 3.31 6.62 38.28 0.25 3.56 16 6 C -0.13 -2.91 6.23 -19.64 -0.12 -3.03 16 7 C -0.08 -1.42 9.70 22.25 0.22 -1.20 16 8 C -0.07 -1.07 6.94 30.26 0.21 -0.86 16 9 C 0.09 1.72 6.67 86.62 0.58 2.29 16 10 N -0.56 -17.74 3.13 -629.48 -1.97 -19.71 16 11 C 0.54 22.02 7.81 87.66 0.68 22.71 16 12 O -0.54 -27.10 14.03 -3.05 -0.04 -27.14 16 13 C -0.12 -4.88 5.30 71.24 0.38 -4.50 16 14 S -0.15 -8.43 20.57 -56.49 -1.16 -9.59 16 15 C -0.55 -31.22 9.50 67.95 0.65 -30.58 16 16 H 0.09 4.50 7.80 -2.91 -0.02 4.48 16 17 C 0.01 0.75 5.49 84.86 0.47 1.22 16 18 N -0.91 -56.33 13.22 21.65 0.29 -56.05 16 19 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 23 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 24 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 25 H 0.07 0.77 8.09 -2.38 -0.02 0.76 16 26 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 27 H 0.10 4.15 6.28 -2.91 -0.02 4.13 16 28 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.11 4.17 8.14 -2.40 -0.02 4.15 16 34 H 0.11 4.17 8.14 -2.40 -0.02 4.15 16 35 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -79.28 312.80 4.56 -74.72 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.09 Total: 12.99 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 4.33 Total: -20.61 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -1.68 Total: -75.76 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.04 Total: -27.14 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.59 kcal Total: -79.28 4.56 -74.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271529716.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.742 kcal (2) G-P(sol) polarization free energy of solvation -79.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds