Wall clock time and date at job start Mon Mar 30 2020 02:10:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17402 * 1
3 3 C 1.47194 * 179.97438 * 2 1
4 4 N 1.46500 * 109.47006 * 40.68972 * 3 2 1
5 5 C 1.37099 * 119.99898 * 269.99666 * 4 3 2
6 6 H 1.08002 * 120.00149 * 140.76667 * 5 4 3
7 7 C 1.38949 * 120.00071 * 320.76734 * 5 4 3
8 8 N 1.31411 * 120.00101 * 159.11569 * 7 5 4
9 9 Si 1.86799 * 119.99842 * 339.10560 * 7 5 4
10 10 H 1.48504 * 109.47158 * 95.83503 * 9 7 5
11 11 H 1.48500 * 109.47380 * 215.83596 * 9 7 5
12 12 H 1.48498 * 109.47276 * 335.83793 * 9 7 5
13 13 C 1.34781 * 120.00134 * 90.00003 * 4 3 2
14 14 O 1.21286 * 120.00010 * 5.03363 * 13 4 3
15 15 C 1.50701 * 119.99716 * 185.03494 * 13 4 3
16 16 C 1.52999 * 109.46575 * 185.36378 * 15 13 4
17 17 C 1.53007 * 109.46912 * 179.39674 * 16 15 13
18 18 C 1.50695 * 109.47157 * 180.02562 * 17 16 15
19 19 C 1.33386 * 125.20441 * 90.00479 * 18 17 16
20 20 C 1.38427 * 114.92413 * 179.97438 * 19 18 17
21 21 C 1.33388 * 114.91778 * 0.02562 * 20 19 18
22 22 S 1.75883 * 109.59525 * 359.75290 * 21 20 19
23 23 H 4.40636 * 5.51452 * 179.97438 * 4 1 2
24 24 H 1.08999 * 109.47350 * 280.68988 * 3 2 1
25 25 H 1.09004 * 109.47022 * 160.68431 * 3 2 1
26 26 H 0.97005 * 119.99792 * 179.97438 * 8 7 5
27 27 H 1.09000 * 109.47445 * 65.36649 * 15 13 4
28 28 H 1.08993 * 109.47106 * 305.36361 * 15 13 4
29 29 H 1.08998 * 109.47225 * 59.40517 * 16 15 13
30 30 H 1.08994 * 109.47351 * 299.40148 * 16 15 13
31 31 H 1.09003 * 109.46839 * 60.00098 * 17 16 15
32 32 H 1.08994 * 109.47499 * 300.00383 * 17 16 15
33 33 H 1.07997 * 122.53749 * 359.95171 * 19 18 17
34 34 H 1.07998 * 122.54080 * 180.02562 * 20 19 18
35 35 H 1.08003 * 125.19993 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1347 -1.0464 -0.9005
5 6 3.3638 -2.3104 -0.4216
6 1 3.1056 -3.1704 -1.0217
7 6 3.9283 -2.4852 0.8361
8 7 3.7806 -3.6269 1.4697
9 14 4.8971 -1.0971 1.6260
10 1 4.0108 -0.3323 2.5397
11 1 6.0333 -1.6627 2.3970
12 1 5.4175 -0.1928 0.5693
13 6 3.3592 -0.7671 -2.1998
14 8 3.2447 0.3706 -2.6041
15 6 3.7526 -1.8686 -3.1502
16 6 4.0756 -1.2688 -4.5201
17 6 4.4895 -2.3853 -5.4810
18 6 4.8082 -1.7945 -6.8301
19 6 6.0107 -1.3667 -7.2176
20 6 6.0632 -0.8619 -8.5055
21 6 4.9031 -0.8793 -9.1636
22 16 3.6529 -1.5698 -8.1372
23 1 -1.0499 -0.0004 -0.0001
24 1 3.0094 -0.1898 1.0098
25 1 3.0089 0.9707 -0.3399
26 1 4.1750 -3.7490 2.3475
27 1 2.9287 -2.5755 -3.2481
28 1 4.6309 -2.3855 -2.7637
29 1 4.8924 -0.5540 -4.4204
30 1 3.1941 -0.7609 -4.9114
31 1 3.6726 -3.1002 -5.5807
32 1 5.3709 -2.8932 -5.0897
33 1 6.8776 -1.4105 -6.5751
34 1 6.9743 -0.4827 -8.9441
35 1 4.7552 -0.5275 -10.1740
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000281632602.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:10:53
Heat of formation + Delta-G solvation = 51.103727 kcal
Electronic energy + Delta-G solvation = -18270.802939 eV
Core-core repulsion = 15362.320398 eV
Total energy + Delta-G solvation = -2908.482541 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 277.088 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-39.02188 -37.94332 -35.45599 -34.27468 -32.67520 -31.66815 -30.19463 -27.43160
-26.00715 -24.79906 -23.23725 -21.31622 -19.22556 -19.00616 -18.34395 -17.21268
-16.48548 -16.04193 -15.60269 -15.43140 -14.95847 -14.20674 -13.80208 -13.42469
-13.20201 -13.07067 -12.84087 -12.68020 -12.44411 -12.13148 -11.88281 -11.46062
-11.25502 -11.09055 -10.94243 -10.74262 -10.66760 -10.25156 -10.22798 -9.83197
-9.46560 -9.24332 -8.67989 -8.55337 -8.46704 -7.95825 -6.54864 -4.17486
1.02048 1.65172 2.02339 2.76078 2.98287 3.15318 3.23173 3.26528
3.51661 3.68768 4.05897 4.49856 4.81279 4.89516 5.03295 5.12467
5.23334 5.45144 5.48896 5.56990 5.78545 5.89102 5.98768 5.99785
6.09236 6.15608 6.25769 6.31282 6.45634 6.48218 6.53191 6.65092
6.75770 7.25967 7.99901 8.16282 8.26009 8.87123 9.25043 9.59054
10.55712
Molecular weight = 277.09amu
Principal moments of inertia in cm(-1)
A = 0.023821 B = 0.003973 C = 0.003707
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1175.142533 B = 7046.284059 C = 7550.555108
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C -0.163 4.163
3 C 0.200 3.800
4 N -0.465 5.465
5 C -0.347 4.347
6 H 0.106 0.894
7 C 0.069 3.931
8 N -0.856 5.856
9 Si 0.868 3.132
10 H -0.272 1.272
11 H -0.283 1.283
12 H -0.257 1.257
13 C 0.488 3.512
14 O -0.594 6.594
15 C -0.119 4.119
16 C -0.096 4.096
17 C -0.054 4.054
18 C -0.153 4.153
19 C -0.151 4.151
20 C -0.130 4.130
21 C -0.226 4.226
22 S 0.090 5.910
23 H 0.212 0.788
24 H 0.087 0.913
25 H 0.094 0.906
26 H 0.276 0.724
27 H 0.084 0.916
28 H 0.094 0.906
29 H 0.068 0.932
30 H 0.066 0.934
31 H 0.075 0.925
32 H 0.085 0.915
33 H 0.139 0.861
34 H 0.136 0.864
35 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.229 2.300 -13.597 13.969
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.248 4.248
2 C -0.164 4.164
3 C 0.077 3.923
4 N -0.186 5.186
5 C -0.474 4.474
6 H 0.123 0.877
7 C -0.139 4.139
8 N -0.491 5.491
9 Si 0.695 3.305
10 H -0.199 1.199
11 H -0.210 1.210
12 H -0.181 1.181
13 C 0.278 3.722
14 O -0.478 6.478
15 C -0.158 4.158
16 C -0.134 4.134
17 C -0.093 4.093
18 C -0.271 4.271
19 C -0.181 4.181
20 C -0.161 4.161
21 C -0.362 4.362
22 S 0.353 5.647
23 H 0.229 0.771
24 H 0.104 0.896
25 H 0.112 0.888
26 H 0.086 0.914
27 H 0.102 0.898
28 H 0.113 0.887
29 H 0.087 0.913
30 H 0.085 0.915
31 H 0.093 0.907
32 H 0.103 0.897
33 H 0.157 0.843
34 H 0.154 0.846
35 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges 0.708 2.423 -13.822 14.051
hybrid contribution 1.732 0.757 0.837 2.068
sum 2.440 3.180 -12.985 13.590
Atomic orbital electron populations
1.24649 0.95621 1.02323 1.02209 1.23744 0.94907 0.98764 0.99005
1.18650 0.83884 0.94096 0.95633 1.43708 1.57379 1.10332 1.07161
1.19059 1.42499 0.82354 1.03455 0.87693 1.25333 0.95765 0.96564
0.96205 1.69758 1.40442 1.25415 1.13449 0.87054 0.80622 0.82771
0.80095 1.19931 1.20982 1.18128 1.20545 0.78851 0.89309 0.83475
1.90550 1.56684 1.22734 1.77865 1.21377 1.03531 0.97664 0.93270
1.21351 1.02306 0.96620 0.93165 1.20289 1.02554 0.97895 0.88562
1.24637 0.96181 1.06322 0.99918 1.20142 0.98004 1.03153 0.96762
1.20156 0.98542 1.02567 0.94807 1.25540 0.96526 1.09986 1.04110
1.84311 1.13674 1.60727 1.06009 0.77100 0.89579 0.88767 0.91365
0.89797 0.88726 0.91337 0.91516 0.90681 0.89662 0.84281 0.84604
0.82274
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.23 -4.40 19.25 29.55 0.57 -3.83 16
2 C -0.16 -3.60 13.67 -37.13 -0.51 -4.11 16
3 C 0.20 4.58 4.72 -6.83 -0.03 4.55 16
4 N -0.46 -11.22 2.11 -117.93 -0.25 -11.47 16
5 C -0.35 -8.85 8.93 -14.93 -0.13 -8.99 16
6 H 0.11 2.77 7.44 -52.49 -0.39 2.38 16
7 C 0.07 1.79 5.32 -17.47 -0.09 1.70 16
8 N -0.86 -23.16 13.96 55.50 0.77 -22.38 16
9 Si 0.87 19.77 25.00 -169.99 -4.25 15.52 16
10 H -0.27 -6.01 6.72 56.52 0.38 -5.63 16
11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16
12 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16
13 C 0.49 11.20 7.61 -10.98 -0.08 11.11 16
14 O -0.59 -14.73 15.54 5.55 0.09 -14.64 16
15 C -0.12 -2.19 4.35 -27.88 -0.12 -2.31 16
16 C -0.10 -1.54 4.50 -26.73 -0.12 -1.66 16
17 C -0.05 -0.70 5.71 -27.88 -0.16 -0.86 16
18 C -0.15 -1.97 5.76 -36.01 -0.21 -2.18 16
19 C -0.15 -1.82 10.05 -41.21 -0.41 -2.23 16
20 C -0.13 -1.41 10.18 -41.21 -0.42 -1.83 16
21 C -0.23 -2.40 11.23 29.04 0.33 -2.07 16
22 S 0.09 1.07 23.33 -107.50 -2.51 -1.44 16
23 H 0.21 3.03 7.80 -54.10 -0.42 2.60 16
24 H 0.09 1.98 3.40 -51.93 -0.18 1.80 16
25 H 0.09 2.08 7.36 -51.93 -0.38 1.70 16
26 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16
27 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16
28 H 0.09 1.70 7.86 -51.93 -0.41 1.30 16
29 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16
30 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16
31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16
33 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16
34 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16
35 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16
LS Contribution 319.00 15.07 4.81 4.81
Total: -1.00 -29.65 319.00 -7.04 -36.70
By element:
Atomic # 1 Polarization: 9.94 SS G_CDS: -4.31 Total: 5.63 kcal
Atomic # 6 Polarization: -11.33 SS G_CDS: -1.40 Total: -12.72 kcal
Atomic # 7 Polarization: -34.37 SS G_CDS: 0.53 Total: -33.85 kcal
Atomic # 8 Polarization: -14.73 SS G_CDS: 0.09 Total: -14.64 kcal
Atomic # 14 Polarization: 19.77 SS G_CDS: -4.25 Total: 15.52 kcal
Atomic # 16 Polarization: 1.07 SS G_CDS: -2.51 Total: -1.44 kcal
Total LS contribution 4.81 Total: 4.81 kcal
Total: -29.65 -7.04 -36.70 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000281632602.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.799 kcal
(2) G-P(sol) polarization free energy of solvation -29.652 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.147 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.695 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.104 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds