Wall clock time and date at job start Mon Mar 30 2020 02:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47006 * 40.68972 * 3 2 1 5 5 C 1.37099 * 119.99898 * 269.99666 * 4 3 2 6 6 H 1.08002 * 120.00149 * 140.76667 * 5 4 3 7 7 C 1.38949 * 120.00071 * 320.76734 * 5 4 3 8 8 N 1.31411 * 120.00101 * 159.11569 * 7 5 4 9 9 Si 1.86799 * 119.99842 * 339.10560 * 7 5 4 10 10 H 1.48504 * 109.47158 * 95.83503 * 9 7 5 11 11 H 1.48500 * 109.47380 * 215.83596 * 9 7 5 12 12 H 1.48498 * 109.47276 * 335.83793 * 9 7 5 13 13 C 1.34781 * 120.00134 * 90.00003 * 4 3 2 14 14 O 1.21286 * 120.00010 * 5.03363 * 13 4 3 15 15 C 1.50701 * 119.99716 * 185.03494 * 13 4 3 16 16 C 1.52999 * 109.46575 * 185.36378 * 15 13 4 17 17 C 1.53007 * 109.46912 * 179.39674 * 16 15 13 18 18 C 1.50695 * 109.47157 * 180.02562 * 17 16 15 19 19 C 1.33386 * 125.20441 * 90.00479 * 18 17 16 20 20 C 1.38427 * 114.92413 * 179.97438 * 19 18 17 21 21 C 1.33388 * 114.91778 * 0.02562 * 20 19 18 22 22 S 1.75883 * 109.59525 * 359.75290 * 21 20 19 23 23 H 4.40636 * 5.51452 * 179.97438 * 4 1 2 24 24 H 1.08999 * 109.47350 * 280.68988 * 3 2 1 25 25 H 1.09004 * 109.47022 * 160.68431 * 3 2 1 26 26 H 0.97005 * 119.99792 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.47445 * 65.36649 * 15 13 4 28 28 H 1.08993 * 109.47106 * 305.36361 * 15 13 4 29 29 H 1.08998 * 109.47225 * 59.40517 * 16 15 13 30 30 H 1.08994 * 109.47351 * 299.40148 * 16 15 13 31 31 H 1.09003 * 109.46839 * 60.00098 * 17 16 15 32 32 H 1.08994 * 109.47499 * 300.00383 * 17 16 15 33 33 H 1.07997 * 122.53749 * 359.95171 * 19 18 17 34 34 H 1.07998 * 122.54080 * 180.02562 * 20 19 18 35 35 H 1.08003 * 125.19993 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -1.0464 -0.9005 5 6 3.3638 -2.3104 -0.4216 6 1 3.1056 -3.1704 -1.0217 7 6 3.9283 -2.4852 0.8361 8 7 3.7806 -3.6269 1.4697 9 14 4.8971 -1.0971 1.6260 10 1 4.0108 -0.3323 2.5397 11 1 6.0333 -1.6627 2.3970 12 1 5.4175 -0.1928 0.5693 13 6 3.3592 -0.7671 -2.1998 14 8 3.2447 0.3706 -2.6041 15 6 3.7526 -1.8686 -3.1502 16 6 4.0756 -1.2688 -4.5201 17 6 4.4895 -2.3853 -5.4810 18 6 4.8082 -1.7945 -6.8301 19 6 6.0107 -1.3667 -7.2176 20 6 6.0632 -0.8619 -8.5055 21 6 4.9031 -0.8793 -9.1636 22 16 3.6529 -1.5698 -8.1372 23 1 -1.0499 -0.0004 -0.0001 24 1 3.0094 -0.1898 1.0098 25 1 3.0089 0.9707 -0.3399 26 1 4.1750 -3.7490 2.3475 27 1 2.9287 -2.5755 -3.2481 28 1 4.6309 -2.3855 -2.7637 29 1 4.8924 -0.5540 -4.4204 30 1 3.1941 -0.7609 -4.9114 31 1 3.6726 -3.1002 -5.5807 32 1 5.3709 -2.8932 -5.0897 33 1 6.8776 -1.4105 -6.5751 34 1 6.9743 -0.4827 -8.9441 35 1 4.7552 -0.5275 -10.1740 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281632602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:53 Heat of formation + Delta-G solvation = 51.103727 kcal Electronic energy + Delta-G solvation = -18270.802939 eV Core-core repulsion = 15362.320398 eV Total energy + Delta-G solvation = -2908.482541 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.02188 -37.94332 -35.45599 -34.27468 -32.67520 -31.66815 -30.19463 -27.43160 -26.00715 -24.79906 -23.23725 -21.31622 -19.22556 -19.00616 -18.34395 -17.21268 -16.48548 -16.04193 -15.60269 -15.43140 -14.95847 -14.20674 -13.80208 -13.42469 -13.20201 -13.07067 -12.84087 -12.68020 -12.44411 -12.13148 -11.88281 -11.46062 -11.25502 -11.09055 -10.94243 -10.74262 -10.66760 -10.25156 -10.22798 -9.83197 -9.46560 -9.24332 -8.67989 -8.55337 -8.46704 -7.95825 -6.54864 -4.17486 1.02048 1.65172 2.02339 2.76078 2.98287 3.15318 3.23173 3.26528 3.51661 3.68768 4.05897 4.49856 4.81279 4.89516 5.03295 5.12467 5.23334 5.45144 5.48896 5.56990 5.78545 5.89102 5.98768 5.99785 6.09236 6.15608 6.25769 6.31282 6.45634 6.48218 6.53191 6.65092 6.75770 7.25967 7.99901 8.16282 8.26009 8.87123 9.25043 9.59054 10.55712 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023821 B = 0.003973 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.142533 B = 7046.284059 C = 7550.555108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.163 4.163 3 C 0.200 3.800 4 N -0.465 5.465 5 C -0.347 4.347 6 H 0.106 0.894 7 C 0.069 3.931 8 N -0.856 5.856 9 Si 0.868 3.132 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.257 1.257 13 C 0.488 3.512 14 O -0.594 6.594 15 C -0.119 4.119 16 C -0.096 4.096 17 C -0.054 4.054 18 C -0.153 4.153 19 C -0.151 4.151 20 C -0.130 4.130 21 C -0.226 4.226 22 S 0.090 5.910 23 H 0.212 0.788 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.276 0.724 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.229 2.300 -13.597 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.164 4.164 3 C 0.077 3.923 4 N -0.186 5.186 5 C -0.474 4.474 6 H 0.123 0.877 7 C -0.139 4.139 8 N -0.491 5.491 9 Si 0.695 3.305 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.181 1.181 13 C 0.278 3.722 14 O -0.478 6.478 15 C -0.158 4.158 16 C -0.134 4.134 17 C -0.093 4.093 18 C -0.271 4.271 19 C -0.181 4.181 20 C -0.161 4.161 21 C -0.362 4.362 22 S 0.353 5.647 23 H 0.229 0.771 24 H 0.104 0.896 25 H 0.112 0.888 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.708 2.423 -13.822 14.051 hybrid contribution 1.732 0.757 0.837 2.068 sum 2.440 3.180 -12.985 13.590 Atomic orbital electron populations 1.24649 0.95621 1.02323 1.02209 1.23744 0.94907 0.98764 0.99005 1.18650 0.83884 0.94096 0.95633 1.43708 1.57379 1.10332 1.07161 1.19059 1.42499 0.82354 1.03455 0.87693 1.25333 0.95765 0.96564 0.96205 1.69758 1.40442 1.25415 1.13449 0.87054 0.80622 0.82771 0.80095 1.19931 1.20982 1.18128 1.20545 0.78851 0.89309 0.83475 1.90550 1.56684 1.22734 1.77865 1.21377 1.03531 0.97664 0.93270 1.21351 1.02306 0.96620 0.93165 1.20289 1.02554 0.97895 0.88562 1.24637 0.96181 1.06322 0.99918 1.20142 0.98004 1.03153 0.96762 1.20156 0.98542 1.02567 0.94807 1.25540 0.96526 1.09986 1.04110 1.84311 1.13674 1.60727 1.06009 0.77100 0.89579 0.88767 0.91365 0.89797 0.88726 0.91337 0.91516 0.90681 0.89662 0.84281 0.84604 0.82274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.40 19.25 29.55 0.57 -3.83 16 2 C -0.16 -3.60 13.67 -37.13 -0.51 -4.11 16 3 C 0.20 4.58 4.72 -6.83 -0.03 4.55 16 4 N -0.46 -11.22 2.11 -117.93 -0.25 -11.47 16 5 C -0.35 -8.85 8.93 -14.93 -0.13 -8.99 16 6 H 0.11 2.77 7.44 -52.49 -0.39 2.38 16 7 C 0.07 1.79 5.32 -17.47 -0.09 1.70 16 8 N -0.86 -23.16 13.96 55.50 0.77 -22.38 16 9 Si 0.87 19.77 25.00 -169.99 -4.25 15.52 16 10 H -0.27 -6.01 6.72 56.52 0.38 -5.63 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 13 C 0.49 11.20 7.61 -10.98 -0.08 11.11 16 14 O -0.59 -14.73 15.54 5.55 0.09 -14.64 16 15 C -0.12 -2.19 4.35 -27.88 -0.12 -2.31 16 16 C -0.10 -1.54 4.50 -26.73 -0.12 -1.66 16 17 C -0.05 -0.70 5.71 -27.88 -0.16 -0.86 16 18 C -0.15 -1.97 5.76 -36.01 -0.21 -2.18 16 19 C -0.15 -1.82 10.05 -41.21 -0.41 -2.23 16 20 C -0.13 -1.41 10.18 -41.21 -0.42 -1.83 16 21 C -0.23 -2.40 11.23 29.04 0.33 -2.07 16 22 S 0.09 1.07 23.33 -107.50 -2.51 -1.44 16 23 H 0.21 3.03 7.80 -54.10 -0.42 2.60 16 24 H 0.09 1.98 3.40 -51.93 -0.18 1.80 16 25 H 0.09 2.08 7.36 -51.93 -0.38 1.70 16 26 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 28 H 0.09 1.70 7.86 -51.93 -0.41 1.30 16 29 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 30 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 319.00 15.07 4.81 4.81 Total: -1.00 -29.65 319.00 -7.04 -36.70 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.31 Total: 5.63 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -1.40 Total: -12.72 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.53 Total: -33.85 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.09 Total: -14.64 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.25 Total: 15.52 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.51 Total: -1.44 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.65 -7.04 -36.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281632602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.799 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds