Wall clock time and date at job start Mon Mar 30 2020 01:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86797 * 119.99865 * 2 1 4 4 H 1.48501 * 109.47729 * 270.00666 * 3 2 1 5 5 H 1.48505 * 109.46867 * 30.00699 * 3 2 1 6 6 H 1.48502 * 109.47159 * 150.00532 * 3 2 1 7 7 C 1.39931 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00190 * 196.98231 * 7 2 1 9 9 C 1.41413 * 120.00010 * 16.97404 * 7 2 1 10 10 C 1.40769 * 120.20700 * 25.40366 * 9 7 2 11 11 C 1.37648 * 119.88412 * 179.71792 * 10 9 7 12 12 C 1.38532 * 120.32106 * 0.51744 * 11 10 9 13 13 C 1.39250 * 120.42645 * 359.47717 * 12 11 10 14 14 N 1.39938 * 119.94959 * 180.23319 * 13 12 11 15 15 C 1.34773 * 120.00486 * 215.62184 * 14 13 12 16 16 O 1.21293 * 119.99804 * 355.55326 * 15 14 13 17 17 C 1.50697 * 120.00016 * 175.55032 * 15 14 13 18 18 H 1.09003 * 110.35799 * 334.12930 * 17 15 14 19 19 C 1.54280 * 110.40142 * 211.68432 * 17 15 14 20 20 C 1.53854 * 108.92557 * 213.25415 * 19 17 15 21 21 C 1.55138 * 106.89666 * 47.25713 * 20 19 17 22 22 S 1.83099 * 110.40134 * 96.45558 * 17 15 14 23 23 C 1.38288 * 120.10557 * 0.26037 * 13 12 11 24 24 H 0.96996 * 119.99912 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.06416 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.83912 * 180.24635 * 11 10 9 27 27 H 1.07990 * 119.78710 * 179.76316 * 12 11 10 28 28 H 0.97000 * 119.99244 * 35.62693 * 14 13 12 29 29 H 1.09002 * 109.60448 * 333.17433 * 19 17 15 30 30 H 1.08997 * 109.60854 * 93.33494 * 19 17 15 31 31 H 1.08998 * 109.97483 * 287.89492 * 20 19 17 32 32 H 1.08997 * 110.00517 * 166.63301 * 20 19 17 33 33 H 1.09004 * 110.85294 * 199.70133 * 21 20 19 34 34 H 1.09001 * 110.86265 * 76.06246 * 21 20 19 35 35 H 1.08001 * 120.15914 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0466 -1.4000 5 1 1.4397 2.6526 0.7002 6 1 3.5399 1.4402 0.6999 7 6 2.0080 -1.2118 -0.0005 8 1 3.0527 -1.2324 0.2726 9 6 1.3472 -2.4097 -0.3586 10 6 0.2172 -2.3717 -1.1972 11 6 -0.4175 -3.5422 -1.5462 12 6 0.0439 -4.7576 -1.0676 13 6 1.1605 -4.8105 -0.2373 14 7 1.6210 -6.0440 0.2366 15 6 2.1386 -6.1387 1.4774 16 8 2.2800 -5.1415 2.1532 17 6 2.5417 -7.4836 2.0250 18 1 1.9674 -8.2761 1.5451 19 6 2.3432 -7.5229 3.5545 20 6 3.4299 -8.4173 4.1759 21 6 4.7817 -7.9861 3.5487 22 16 4.3356 -7.7594 1.7837 23 6 1.8149 -3.6458 0.1202 24 1 -0.4850 0.8400 0.0004 25 1 -0.1488 -1.4263 -1.5695 26 1 -1.2820 -3.5126 -2.1929 27 1 -0.4629 -5.6703 -1.3438 28 1 1.5676 -6.8309 -0.3280 29 1 2.4235 -6.5142 3.9598 30 1 1.3586 -7.9297 3.7852 31 1 3.2287 -9.4632 3.9443 32 1 3.4581 -8.2740 5.2560 33 1 5.5299 -8.7707 3.6622 34 1 5.1307 -7.0498 3.9842 35 1 2.6808 -3.6858 0.7645 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313444332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:56 Heat of formation + Delta-G solvation = -22.308183 kcal Electronic energy + Delta-G solvation = -18625.037539 eV Core-core repulsion = 15713.371619 eV Total energy + Delta-G solvation = -2911.665921 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.77782 -37.32214 -35.76486 -34.41465 -33.02720 -30.39310 -29.79503 -27.95732 -25.42232 -25.19034 -22.07945 -20.98390 -20.66050 -19.71135 -17.83909 -17.13512 -16.75897 -15.53713 -15.45325 -14.94845 -14.64206 -14.36861 -14.24485 -13.80279 -13.11232 -13.00319 -12.83163 -12.35339 -12.08654 -11.80184 -11.68697 -11.53047 -11.31246 -11.10382 -11.03819 -10.65282 -10.47487 -10.16832 -10.09889 -9.72866 -9.49554 -9.14419 -8.83467 -7.78042 -7.41975 -6.90344 -6.69696 -4.30481 1.38204 2.11972 2.74335 2.91195 3.11632 3.16397 3.22748 3.36487 3.58907 3.99521 4.32721 4.56124 4.61206 4.66914 4.85852 5.01594 5.08321 5.36178 5.46032 5.56122 5.66625 5.74674 6.00339 6.26144 6.41573 6.76646 7.03812 7.06941 7.12115 7.27884 7.56761 7.75648 7.98640 8.12258 8.18599 8.27139 8.63359 8.73433 8.96832 9.01115 10.25393 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.004439 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.486560 B = 6306.072857 C = 7020.775596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.078 0.922 9 C 0.118 3.882 10 C -0.171 4.171 11 C -0.093 4.093 12 C -0.261 4.261 13 C 0.147 3.853 14 N -0.661 5.661 15 C 0.520 3.480 16 O -0.502 6.502 17 C -0.069 4.069 18 H 0.114 0.886 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.077 4.077 22 S -0.250 6.250 23 C -0.208 4.208 24 H 0.280 0.720 25 H 0.118 0.882 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.398 0.602 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.938 -14.320 4.817 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.096 0.904 9 C 0.115 3.885 10 C -0.191 4.191 11 C -0.112 4.112 12 C -0.282 4.282 13 C 0.056 3.944 14 N -0.305 5.305 15 C 0.303 3.697 16 O -0.376 6.376 17 C -0.200 4.200 18 H 0.132 0.868 19 C -0.161 4.161 20 C -0.162 4.162 21 C -0.226 4.226 22 S -0.024 6.024 23 C -0.229 4.229 24 H 0.090 0.910 25 H 0.136 0.864 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.232 0.768 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.523 -13.495 4.377 14.891 hybrid contribution -0.502 0.298 0.687 0.902 sum 4.020 -13.197 5.064 14.696 Atomic orbital electron populations 1.69834 1.07552 1.29085 1.35540 1.25893 0.94725 1.01249 0.92281 0.86304 0.80551 0.80566 0.79247 1.19289 1.20352 1.18594 1.19573 0.97884 0.91002 1.40232 0.90407 1.17519 0.91056 0.91719 0.88227 1.21339 0.99675 0.96784 1.01277 1.20456 0.98530 0.92676 0.99553 1.20037 1.00473 0.96944 1.10770 1.17456 0.94941 0.83632 0.98388 1.43353 1.61250 1.11123 1.14739 1.19875 0.78029 0.89847 0.81973 1.90755 1.51876 1.36759 1.58248 1.23885 0.96120 0.99289 1.00745 0.86752 1.22348 1.00213 1.03321 0.90229 1.22552 0.91971 1.00370 1.01303 1.24337 1.00349 1.05152 0.92725 1.87700 1.07169 1.94200 1.13314 1.21097 1.03950 0.91249 1.06610 0.90962 0.86380 0.89040 0.89325 0.76785 0.88434 0.89507 0.90282 0.89406 0.87737 0.88721 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.17 10.96 55.55 0.61 -20.56 16 2 C 0.08 1.98 5.15 -17.34 -0.09 1.89 16 3 Si 0.91 19.37 29.59 -169.99 -5.03 14.34 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 7 C -0.46 -12.76 9.05 -37.74 -0.34 -13.10 16 8 H 0.08 2.13 7.90 -52.49 -0.41 1.71 16 9 C 0.12 3.30 5.56 -106.85 -0.59 2.70 16 10 C -0.17 -4.55 8.69 -38.84 -0.34 -4.89 16 11 C -0.09 -2.20 10.02 -39.69 -0.40 -2.60 16 12 C -0.26 -5.83 9.97 -39.10 -0.39 -6.22 16 13 C 0.15 3.41 6.28 -83.76 -0.53 2.89 16 14 N -0.66 -12.19 5.33 -9.91 -0.05 -12.24 16 15 C 0.52 9.52 6.82 -10.99 -0.07 9.44 16 16 O -0.50 -11.43 13.24 5.55 0.07 -11.36 16 17 C -0.07 -0.90 3.65 -27.21 -0.10 -1.00 16 18 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 19 C -0.12 -1.38 5.90 -25.62 -0.15 -1.53 16 20 C -0.12 -1.03 6.46 -25.16 -0.16 -1.20 16 21 C -0.08 -0.75 7.38 38.29 0.28 -0.47 16 22 S -0.25 -3.32 22.68 -107.50 -2.44 -5.76 16 23 C -0.21 -5.51 8.43 -38.68 -0.33 -5.84 16 24 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 25 H 0.12 3.21 6.19 -52.49 -0.32 2.89 16 26 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 27 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.40 5.79 8.82 -40.82 -0.36 5.43 16 29 H 0.10 1.36 6.91 -51.93 -0.36 1.00 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.11 3.08 6.26 -52.49 -0.33 2.75 16 LS Contribution 305.82 15.07 4.61 4.61 Total: -1.00 -31.53 305.82 -9.74 -41.28 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -4.30 Total: 9.63 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -3.21 Total: -19.93 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.56 Total: -32.81 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.07 Total: -11.36 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -2.44 Total: -5.76 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.53 -9.74 -41.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313444332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.968 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds