Wall clock time and date at job start Mon Mar 30 2020 01:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86797 * 119.99865 * 2 1 4 4 H 1.48501 * 109.47729 * 270.00666 * 3 2 1 5 5 H 1.48505 * 109.46867 * 30.00699 * 3 2 1 6 6 H 1.48502 * 109.47159 * 150.00532 * 3 2 1 7 7 C 1.39931 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00190 * 196.98231 * 7 2 1 9 9 C 1.41413 * 120.00010 * 16.97404 * 7 2 1 10 10 C 1.40769 * 120.20700 * 25.40366 * 9 7 2 11 11 C 1.37648 * 119.88412 * 179.71792 * 10 9 7 12 12 C 1.38532 * 120.32106 * 0.51744 * 11 10 9 13 13 C 1.39250 * 120.42645 * 359.47717 * 12 11 10 14 14 N 1.39938 * 119.94959 * 180.23319 * 13 12 11 15 15 C 1.34773 * 120.00486 * 215.62184 * 14 13 12 16 16 O 1.21293 * 119.99804 * 355.55326 * 15 14 13 17 17 C 1.50697 * 120.00016 * 175.55032 * 15 14 13 18 18 H 1.09003 * 110.35799 * 334.12930 * 17 15 14 19 19 C 1.54280 * 110.40142 * 211.68432 * 17 15 14 20 20 C 1.53854 * 108.92557 * 213.25415 * 19 17 15 21 21 C 1.55138 * 106.89666 * 47.25713 * 20 19 17 22 22 S 1.83099 * 110.40134 * 96.45558 * 17 15 14 23 23 C 1.38288 * 120.10557 * 0.26037 * 13 12 11 24 24 H 0.96996 * 119.99912 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.06416 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.83912 * 180.24635 * 11 10 9 27 27 H 1.07990 * 119.78710 * 179.76316 * 12 11 10 28 28 H 0.97000 * 119.99244 * 35.62693 * 14 13 12 29 29 H 1.09002 * 109.60448 * 333.17433 * 19 17 15 30 30 H 1.08997 * 109.60854 * 93.33494 * 19 17 15 31 31 H 1.08998 * 109.97483 * 287.89492 * 20 19 17 32 32 H 1.08997 * 110.00517 * 166.63301 * 20 19 17 33 33 H 1.09004 * 110.85294 * 199.70133 * 21 20 19 34 34 H 1.09001 * 110.86265 * 76.06246 * 21 20 19 35 35 H 1.08001 * 120.15914 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0466 -1.4000 5 1 1.4397 2.6526 0.7002 6 1 3.5399 1.4402 0.6999 7 6 2.0080 -1.2118 -0.0005 8 1 3.0527 -1.2324 0.2726 9 6 1.3472 -2.4097 -0.3586 10 6 0.2172 -2.3717 -1.1972 11 6 -0.4175 -3.5422 -1.5462 12 6 0.0439 -4.7576 -1.0676 13 6 1.1605 -4.8105 -0.2373 14 7 1.6210 -6.0440 0.2366 15 6 2.1386 -6.1387 1.4774 16 8 2.2800 -5.1415 2.1532 17 6 2.5417 -7.4836 2.0250 18 1 1.9674 -8.2761 1.5451 19 6 2.3432 -7.5229 3.5545 20 6 3.4299 -8.4173 4.1759 21 6 4.7817 -7.9861 3.5487 22 16 4.3356 -7.7594 1.7837 23 6 1.8149 -3.6458 0.1202 24 1 -0.4850 0.8400 0.0004 25 1 -0.1488 -1.4263 -1.5695 26 1 -1.2820 -3.5126 -2.1929 27 1 -0.4629 -5.6703 -1.3438 28 1 1.5676 -6.8309 -0.3280 29 1 2.4235 -6.5142 3.9598 30 1 1.3586 -7.9297 3.7852 31 1 3.2287 -9.4632 3.9443 32 1 3.4581 -8.2740 5.2560 33 1 5.5299 -8.7707 3.6622 34 1 5.1307 -7.0498 3.9842 35 1 2.6808 -3.6858 0.7645 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313444332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:55 Heat of formation + Delta-G solvation = -41.492557 kcal Electronic energy + Delta-G solvation = -18625.869436 eV Core-core repulsion = 15713.371619 eV Total energy + Delta-G solvation = -2912.497817 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.34879 -39.11194 -36.77756 -36.15996 -34.87557 -31.77563 -31.56330 -29.57960 -27.28665 -26.34858 -23.54227 -22.77110 -21.92381 -21.25143 -19.59589 -18.63142 -17.85224 -17.36929 -16.95388 -16.49318 -16.22927 -15.81189 -15.38901 -15.13767 -14.76462 -14.69127 -14.09534 -13.86236 -13.61120 -13.21759 -13.08071 -12.83946 -12.69553 -12.55711 -12.42500 -12.23493 -12.02578 -11.84589 -11.60365 -11.28588 -11.06572 -10.94331 -10.65630 -9.41301 -8.85836 -8.75130 -8.65131 -6.38743 0.27643 0.92758 1.02747 1.24695 1.35021 1.48640 1.49067 1.91243 2.10820 2.21064 2.71053 3.39363 3.59485 3.72118 3.75869 3.96649 4.09889 4.29981 4.45554 4.61224 4.64217 4.66094 4.88021 4.93975 5.01585 5.08541 5.11111 5.19120 5.20546 5.31062 5.72312 5.84455 6.05301 6.08854 6.32456 6.55032 6.66466 6.91457 6.98809 7.22984 8.32453 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.004439 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.486560 B = 6306.072857 C = 7020.775596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.984 3.016 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.265 1.265 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.087 3.913 10 C -0.196 4.196 11 C -0.091 4.091 12 C -0.248 4.248 13 C 0.153 3.847 14 N -0.652 5.652 15 C 0.514 3.486 16 O -0.554 6.554 17 C -0.054 4.054 18 H 0.151 0.849 19 C -0.125 4.125 20 C -0.112 4.112 21 C -0.068 4.068 22 S -0.301 6.301 23 C -0.237 4.237 24 H 0.289 0.711 25 H 0.105 0.895 26 H 0.125 0.875 27 H 0.134 0.866 28 H 0.420 0.580 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.083 0.917 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.373 -16.600 5.025 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.180 1.180 5 H -0.187 1.187 6 H -0.189 1.189 7 C -0.533 4.533 8 H 0.081 0.919 9 C 0.085 3.915 10 C -0.216 4.216 11 C -0.110 4.110 12 C -0.269 4.269 13 C 0.060 3.940 14 N -0.298 5.298 15 C 0.300 3.700 16 O -0.432 6.432 17 C -0.185 4.185 18 H 0.169 0.831 19 C -0.164 4.164 20 C -0.150 4.150 21 C -0.215 4.215 22 S -0.075 6.075 23 C -0.258 4.258 24 H 0.100 0.900 25 H 0.122 0.878 26 H 0.143 0.857 27 H 0.151 0.849 28 H 0.258 0.742 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.151 0.849 34 H 0.102 0.898 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.957 -15.840 4.567 16.954 hybrid contribution -0.335 0.862 0.651 1.131 sum 3.622 -14.978 5.218 16.269 Atomic orbital electron populations 1.69867 1.08839 1.30582 1.35716 1.26725 0.95590 1.04334 0.91129 0.85195 0.78827 0.75792 0.79788 1.18049 1.18717 1.18934 1.19754 0.97688 0.92778 1.43035 0.91865 1.17858 0.92153 0.92399 0.89124 1.21311 1.00265 0.97590 1.02398 1.20851 0.98901 0.92098 0.99164 1.20487 0.99401 0.98212 1.08806 1.17556 0.94508 0.84488 0.97443 1.43300 1.60861 1.10257 1.15380 1.20882 0.76399 0.91460 0.81294 1.90744 1.53576 1.39318 1.59530 1.23896 0.96122 0.96412 1.02080 0.83136 1.22431 1.02775 1.02363 0.88795 1.22558 0.89553 1.00832 1.02064 1.24520 1.02035 1.05687 0.89287 1.87884 1.08091 1.93986 1.17521 1.21028 1.04377 0.92693 1.07735 0.89998 0.87754 0.85697 0.84855 0.74173 0.91849 0.87192 0.87780 0.87294 0.84943 0.89789 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.26 10.96 21.82 0.24 -45.02 16 2 C 0.04 1.99 5.15 85.25 0.44 2.43 16 3 Si 0.98 40.85 29.59 68.60 2.03 42.88 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.50 -29.88 9.05 23.46 0.21 -29.66 16 8 H 0.06 3.75 7.90 -2.91 -0.02 3.73 16 9 C 0.09 5.16 5.56 -21.31 -0.12 5.04 16 10 C -0.20 -10.72 8.69 22.75 0.20 -10.52 16 11 C -0.09 -4.23 10.02 22.20 0.22 -4.00 16 12 C -0.25 -10.56 9.97 22.58 0.23 -10.33 16 13 C 0.15 7.09 6.28 38.10 0.24 7.33 16 14 N -0.65 -23.42 5.33 -303.65 -1.62 -25.04 16 15 C 0.51 18.81 6.82 87.66 0.60 19.41 16 16 O -0.55 -26.41 13.24 -3.07 -0.04 -26.45 16 17 C -0.05 -1.32 3.65 30.28 0.11 -1.21 16 18 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 19 C -0.12 -2.56 5.90 31.32 0.18 -2.38 16 20 C -0.11 -1.49 6.46 31.62 0.20 -1.29 16 21 C -0.07 -1.17 7.38 72.71 0.54 -0.63 16 22 S -0.30 -7.65 22.68 -56.49 -1.28 -8.93 16 23 C -0.24 -13.22 8.43 22.85 0.19 -13.02 16 24 H 0.29 14.22 8.30 -92.71 -0.77 13.45 16 25 H 0.10 5.90 6.19 -2.91 -0.02 5.88 16 26 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 27 H 0.13 4.49 8.06 -2.92 -0.02 4.47 16 28 H 0.42 11.16 8.82 -92.71 -0.82 10.34 16 29 H 0.06 1.77 6.91 -2.39 -0.02 1.75 16 30 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 5.14 6.26 -2.91 -0.02 5.12 16 Total: -1.00 -74.42 305.82 2.87 -71.55 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.29 Total: 29.87 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: 3.24 Total: -38.85 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -1.38 Total: -70.07 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.04 Total: -26.45 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 16 Polarization: -7.65 SS G_CDS: -1.28 Total: -8.93 kcal Total: -74.42 2.87 -71.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313444332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.058 kcal (2) G-P(sol) polarization free energy of solvation -74.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds