Wall clock time and date at job start Mon Mar 30 2020 01:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86794 * 120.00376 * 2 1 4 4 H 1.48507 * 109.47082 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47245 * 119.99589 * 3 2 1 6 6 H 1.48496 * 109.47507 * 239.99937 * 3 2 1 7 7 C 1.40061 * 119.99587 * 180.27446 * 2 1 3 8 8 H 1.07994 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.46372 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.21696 * 119.99856 * 354.55061 * 9 7 2 11 11 N 1.34767 * 120.00086 * 174.55750 * 9 7 2 12 12 C 1.47232 * 121.35969 * 184.69396 * 11 9 7 13 13 C 1.52778 * 107.97387 * 115.81430 * 12 11 9 14 14 C 1.50689 * 110.84635 * 47.63545 * 13 12 11 15 15 N 1.32774 * 117.43351 * 159.81738 * 14 13 12 16 16 C 1.31491 * 122.43558 * 179.44378 * 15 14 13 17 17 C 1.38237 * 120.66964 * 359.95441 * 16 15 14 18 18 N 1.48017 * 120.60366 * 180.23445 * 17 16 15 19 19 O 1.21797 * 120.00158 * 180.02562 * 18 17 16 20 20 O 1.21803 * 120.00404 * 0.02562 * 18 17 16 21 21 C 1.38433 * 118.79124 * 0.25860 * 17 16 15 22 22 C 1.37607 * 122.63817 * 339.68567 * 14 13 12 23 23 C 1.46722 * 121.35871 * 4.40709 * 11 9 7 24 24 H 0.97009 * 119.99688 * 359.72915 * 1 2 3 25 25 H 1.08998 * 109.76202 * 235.43201 * 12 11 9 26 26 H 1.09003 * 109.76107 * 356.20049 * 12 11 9 27 27 H 1.09004 * 109.19808 * 167.98122 * 13 12 11 28 28 H 1.08992 * 109.20311 * 287.32251 * 13 12 11 29 29 H 1.08002 * 119.66217 * 179.97438 * 16 15 14 30 30 H 1.07995 * 120.58857 * 180.02562 * 21 17 16 31 31 H 1.09000 * 109.44446 * 344.24890 * 23 11 9 32 32 H 1.09000 * 109.44484 * 104.14817 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 1.2758 2.7465 -0.0006 5 1 3.0945 1.6963 1.2125 6 1 3.0945 1.6963 -1.2124 7 6 2.0069 -1.2130 -0.0058 8 1 3.0869 -1.2130 -0.0054 9 6 1.2750 -2.4806 -0.0124 10 8 0.0621 -2.4833 0.0872 11 7 1.9442 -3.6445 -0.1287 12 6 1.2335 -4.9290 -0.2414 13 6 1.5460 -5.5219 -1.6143 14 6 3.0254 -5.4707 -1.8964 15 7 3.4994 -6.2907 -2.8269 16 6 4.7714 -6.3205 -3.1590 17 6 5.6812 -5.4829 -2.5413 18 7 7.1118 -5.5141 -2.9199 19 8 7.9041 -4.7716 -2.3682 20 8 7.4968 -6.2822 -3.7832 21 6 5.2301 -4.6149 -1.5618 22 6 3.8780 -4.6169 -1.2348 23 6 3.4107 -3.6828 -0.1545 24 1 -0.4850 0.8401 0.0040 25 1 1.5744 -5.6086 0.5397 26 1 0.1600 -4.7658 -0.1462 27 1 1.2116 -6.5590 -1.6414 28 1 1.0160 -4.9543 -2.3790 29 1 5.1086 -7.0062 -3.9223 30 1 5.9157 -3.9476 -1.0608 31 1 3.7965 -2.6821 -0.3493 32 1 3.7815 -4.0329 0.8089 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332673060.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:03 Heat of formation + Delta-G solvation = 1.535880 kcal Electronic energy + Delta-G solvation = -20931.326249 eV Core-core repulsion = 17474.401071 eV Total energy + Delta-G solvation = -3456.925179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.33814 -40.86302 -38.07694 -36.67323 -35.36373 -33.95555 -32.74565 -31.63290 -30.94540 -27.05904 -26.39956 -25.67914 -23.60848 -23.05753 -21.55747 -19.51487 -18.98846 -18.79823 -17.66218 -17.29824 -16.66886 -16.04748 -15.55005 -15.34712 -14.77999 -14.21000 -14.17186 -13.67245 -13.51705 -12.89907 -12.68626 -12.20721 -12.06382 -11.76235 -11.69359 -11.43447 -11.30999 -11.24524 -11.07866 -10.97166 -10.51103 -10.41068 -10.33661 -9.97871 -9.25791 -9.02994 -7.88237 -7.65003 -6.40141 -4.87630 -0.35905 0.68709 1.17573 1.23140 3.03856 3.10165 3.11026 3.15465 3.73383 3.88852 4.07623 4.13400 4.27225 4.31978 4.36066 4.70911 5.03392 5.21500 5.29061 5.37606 5.50574 5.55151 5.73340 5.84174 5.86285 6.07058 6.16023 6.22833 6.32501 7.17454 7.24578 7.35834 7.52906 7.81983 8.06052 8.81233 9.11450 10.32286 10.52140 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.019857 B = 0.005218 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.744289 B = 5364.726590 C = 6490.826853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.561 3.439 10 O -0.569 6.569 11 N -0.644 5.644 12 C 0.116 3.884 13 C -0.091 4.091 14 C 0.196 3.804 15 N -0.477 5.477 16 C 0.171 3.829 17 C -0.111 4.111 18 N 0.038 4.962 19 O -0.160 6.160 20 O -0.162 6.162 21 C -0.008 4.008 22 C -0.128 4.128 23 C 0.162 3.838 24 H 0.272 0.728 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.180 0.820 30 H 0.166 0.834 31 H 0.115 0.885 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.330 -9.201 -2.706 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.368 3.632 10 O -0.451 6.451 11 N -0.382 5.382 12 C -0.008 4.008 13 C -0.130 4.130 14 C 0.062 3.938 15 N -0.187 5.187 16 C 0.009 3.991 17 C -0.197 4.197 18 N 0.557 4.443 19 O -0.376 6.376 20 O -0.378 6.378 21 C -0.035 4.035 22 C -0.132 4.132 23 C 0.036 3.964 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.197 0.803 30 H 0.184 0.816 31 H 0.132 0.868 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.137 -9.586 -2.857 11.735 hybrid contribution 1.699 1.255 0.122 2.116 sum 7.836 -8.331 -2.735 11.759 Atomic orbital electron populations 1.69977 1.07110 1.27842 1.34200 1.25714 0.94667 1.00399 0.92415 0.86426 0.79919 0.80877 0.79627 1.20343 1.19029 1.19196 1.20887 0.93488 0.89122 1.54699 0.90986 1.18247 0.86927 0.81694 0.76290 1.90621 1.14133 1.85487 1.54843 1.48346 1.03569 1.06407 1.79905 1.21238 1.00565 0.86151 0.92867 1.21035 0.87761 1.03238 1.00968 1.21695 0.97716 0.86925 0.87422 1.68066 1.13272 1.22283 1.15059 1.22704 0.87180 0.93701 0.95521 1.22215 0.82255 1.08231 1.06979 1.43418 1.02880 0.98908 0.99093 1.94550 1.50585 1.37928 1.54537 1.94529 1.82765 1.35461 1.24996 1.21484 0.96205 0.93964 0.91819 1.21167 0.91836 0.99551 1.00627 1.20212 0.84174 0.98594 0.93372 0.91714 0.92686 0.87952 0.88601 0.88240 0.80260 0.81621 0.86776 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.46 11.84 55.55 0.66 -20.81 16 2 C 0.09 2.31 5.50 -17.36 -0.10 2.21 16 3 Si 0.91 18.83 29.56 -169.99 -5.02 13.81 16 4 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.55 -14.00 8.85 -35.63 -0.32 -14.31 16 8 H 0.07 1.64 5.81 -52.49 -0.31 1.34 16 9 C 0.56 14.49 7.64 -12.99 -0.10 14.39 16 10 O -0.57 -16.94 14.53 5.19 0.08 -16.86 16 11 N -0.64 -12.79 2.94 -176.34 -0.52 -13.31 16 12 C 0.12 1.91 6.44 -3.76 -0.02 1.89 16 13 C -0.09 -1.28 6.10 -28.00 -0.17 -1.46 16 14 C 0.20 2.81 6.64 -82.42 -0.55 2.26 16 15 N -0.48 -6.50 10.18 -9.51 -0.10 -6.60 16 16 C 0.17 2.10 10.73 -17.70 -0.19 1.91 16 17 C -0.11 -1.43 6.87 -79.88 -0.55 -1.98 16 18 N 0.04 0.53 4.45 34.00 0.15 0.69 16 19 O -0.16 -2.33 18.53 -29.46 -0.55 -2.88 16 20 O -0.16 -2.27 18.50 -29.46 -0.55 -2.82 16 21 C -0.01 -0.11 9.27 -39.18 -0.36 -0.47 16 22 C -0.13 -1.81 5.81 -104.74 -0.61 -2.41 16 23 C 0.16 2.56 6.08 -5.28 -0.03 2.52 16 24 H 0.27 6.97 8.29 -40.82 -0.34 6.64 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.10 1.88 7.07 -51.93 -0.37 1.51 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.18 1.75 7.64 -52.49 -0.40 1.35 16 30 H 0.17 1.77 7.70 -52.49 -0.40 1.37 16 31 H 0.11 1.87 5.55 -51.93 -0.29 1.58 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 286.42 15.07 4.32 4.32 Total: -1.00 -31.58 286.42 -7.12 -38.69 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -2.59 Total: 1.21 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -3.00 Total: 4.56 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.19 Total: -40.03 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -1.02 Total: -22.56 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.58 -7.12 -38.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332673060.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.228 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds