Wall clock time and date at job start Mon Mar 30 2020 01:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86794 * 120.00376 * 2 1 4 4 H 1.48507 * 109.47082 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47245 * 119.99589 * 3 2 1 6 6 H 1.48496 * 109.47507 * 239.99937 * 3 2 1 7 7 C 1.40061 * 119.99587 * 180.27446 * 2 1 3 8 8 H 1.07994 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.46372 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.21696 * 119.99856 * 354.55061 * 9 7 2 11 11 N 1.34767 * 120.00086 * 174.55750 * 9 7 2 12 12 C 1.47232 * 121.35969 * 184.69396 * 11 9 7 13 13 C 1.52778 * 107.97387 * 115.81430 * 12 11 9 14 14 C 1.50689 * 110.84635 * 47.63545 * 13 12 11 15 15 N 1.32774 * 117.43351 * 159.81738 * 14 13 12 16 16 C 1.31491 * 122.43558 * 179.44378 * 15 14 13 17 17 C 1.38237 * 120.66964 * 359.95441 * 16 15 14 18 18 N 1.48017 * 120.60366 * 180.23445 * 17 16 15 19 19 O 1.21797 * 120.00158 * 180.02562 * 18 17 16 20 20 O 1.21803 * 120.00404 * 0.02562 * 18 17 16 21 21 C 1.38433 * 118.79124 * 0.25860 * 17 16 15 22 22 C 1.37607 * 122.63817 * 339.68567 * 14 13 12 23 23 C 1.46722 * 121.35871 * 4.40709 * 11 9 7 24 24 H 0.97009 * 119.99688 * 359.72915 * 1 2 3 25 25 H 1.08998 * 109.76202 * 235.43201 * 12 11 9 26 26 H 1.09003 * 109.76107 * 356.20049 * 12 11 9 27 27 H 1.09004 * 109.19808 * 167.98122 * 13 12 11 28 28 H 1.08992 * 109.20311 * 287.32251 * 13 12 11 29 29 H 1.08002 * 119.66217 * 179.97438 * 16 15 14 30 30 H 1.07995 * 120.58857 * 180.02562 * 21 17 16 31 31 H 1.09000 * 109.44446 * 344.24890 * 23 11 9 32 32 H 1.09000 * 109.44484 * 104.14817 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 1.2758 2.7465 -0.0006 5 1 3.0945 1.6963 1.2125 6 1 3.0945 1.6963 -1.2124 7 6 2.0069 -1.2130 -0.0058 8 1 3.0869 -1.2130 -0.0054 9 6 1.2750 -2.4806 -0.0124 10 8 0.0621 -2.4833 0.0872 11 7 1.9442 -3.6445 -0.1287 12 6 1.2335 -4.9290 -0.2414 13 6 1.5460 -5.5219 -1.6143 14 6 3.0254 -5.4707 -1.8964 15 7 3.4994 -6.2907 -2.8269 16 6 4.7714 -6.3205 -3.1590 17 6 5.6812 -5.4829 -2.5413 18 7 7.1118 -5.5141 -2.9199 19 8 7.9041 -4.7716 -2.3682 20 8 7.4968 -6.2822 -3.7832 21 6 5.2301 -4.6149 -1.5618 22 6 3.8780 -4.6169 -1.2348 23 6 3.4107 -3.6828 -0.1545 24 1 -0.4850 0.8401 0.0040 25 1 1.5744 -5.6086 0.5397 26 1 0.1600 -4.7658 -0.1462 27 1 1.2116 -6.5590 -1.6414 28 1 1.0160 -4.9543 -2.3790 29 1 5.1086 -7.0062 -3.9223 30 1 5.9157 -3.9476 -1.0608 31 1 3.7965 -2.6821 -0.3493 32 1 3.7815 -4.0329 0.8089 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332673060.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:03 Heat of formation + Delta-G solvation = -18.696801 kcal Electronic energy + Delta-G solvation = -20932.203604 eV Core-core repulsion = 17474.401071 eV Total energy + Delta-G solvation = -3457.802534 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.40616 -41.97895 -39.70744 -37.76029 -36.98839 -35.07503 -34.66368 -32.99993 -32.18273 -28.69132 -27.71992 -27.02077 -24.82911 -24.21778 -22.91193 -20.99961 -20.13673 -19.97788 -18.73967 -18.72227 -17.85952 -17.77150 -16.94487 -16.66215 -16.21664 -15.76257 -15.50343 -14.80227 -14.59960 -14.43625 -14.13063 -13.77240 -13.48832 -13.19522 -12.95502 -12.78725 -12.74040 -12.56918 -12.40535 -12.34209 -12.17045 -12.05581 -11.44189 -11.08506 -10.93664 -10.38565 -9.86864 -9.29386 -8.32725 -6.88003 -1.43040 -0.34121 0.09075 0.17182 1.40912 1.42126 1.53869 2.09995 2.19646 2.41893 2.55194 2.80283 3.10848 3.15111 3.26579 3.56713 3.60613 3.93180 4.07279 4.20800 4.33772 4.39341 4.54593 4.63341 4.68741 4.81399 4.87499 5.02750 5.19577 5.34342 5.62204 6.02990 6.25706 6.31940 6.42505 6.85250 7.30492 8.40170 8.62471 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.019857 B = 0.005218 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.744289 B = 5364.726590 C = 6490.826853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.034 3.966 3 Si 0.988 3.012 4 H -0.278 1.278 5 H -0.252 1.252 6 H -0.256 1.256 7 C -0.569 4.569 8 H 0.097 0.903 9 C 0.548 3.452 10 O -0.623 6.623 11 N -0.647 5.647 12 C 0.115 3.885 13 C -0.082 4.082 14 C 0.188 3.812 15 N -0.483 5.483 16 C 0.181 3.819 17 C -0.114 4.114 18 N 0.040 4.960 19 O -0.176 6.176 20 O -0.158 6.158 21 C 0.005 3.995 22 C -0.136 4.136 23 C 0.162 3.838 24 H 0.275 0.725 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.125 0.875 28 H 0.083 0.917 29 H 0.206 0.794 30 H 0.185 0.815 31 H 0.107 0.893 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.762 -9.724 -3.126 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.203 1.203 5 H -0.175 1.175 6 H -0.180 1.180 7 C -0.605 4.605 8 H 0.115 0.885 9 C 0.355 3.645 10 O -0.510 6.510 11 N -0.384 5.384 12 C -0.009 4.009 13 C -0.120 4.120 14 C 0.055 3.945 15 N -0.192 5.192 16 C 0.018 3.982 17 C -0.200 4.200 18 N 0.557 4.443 19 O -0.389 6.389 20 O -0.375 6.375 21 C -0.021 4.021 22 C -0.140 4.140 23 C 0.038 3.962 24 H 0.085 0.915 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.143 0.857 28 H 0.101 0.899 29 H 0.223 0.777 30 H 0.203 0.797 31 H 0.125 0.875 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.632 -10.141 -3.264 13.712 hybrid contribution 0.984 1.263 0.213 1.616 sum 9.616 -8.878 -3.050 13.438 Atomic orbital electron populations 1.70154 1.09447 1.29062 1.36156 1.26889 0.95406 1.04721 0.91219 0.85197 0.78370 0.75273 0.80363 1.20265 1.17531 1.18034 1.21460 0.94912 0.89624 1.54483 0.88533 1.18532 0.86506 0.83611 0.75885 1.90574 1.16400 1.86916 1.57082 1.48074 1.05563 1.06097 1.78663 1.21372 0.98877 0.85206 0.95410 1.20879 0.88072 1.04378 0.98676 1.21670 0.97582 0.87352 0.87897 1.68102 1.13889 1.22257 1.14990 1.23131 0.86469 0.93324 0.95230 1.22252 0.81845 1.08648 1.07292 1.43499 1.03103 0.98740 0.98960 1.94558 1.50956 1.38388 1.54961 1.94525 1.82937 1.35228 1.24821 1.21605 0.95729 0.93574 0.91212 1.20912 0.92502 0.99757 1.00846 1.20305 0.81447 0.99025 0.95383 0.91543 0.89862 0.90635 0.85711 0.89930 0.77699 0.79736 0.87474 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.65 11.84 21.84 0.26 -47.39 16 2 C 0.03 1.75 5.50 85.31 0.47 2.22 16 3 Si 0.99 38.41 29.56 68.60 2.03 40.44 16 4 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.25 -9.12 7.11 99.48 0.71 -8.42 16 6 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.57 -29.38 8.85 24.83 0.22 -29.16 16 8 H 0.10 4.32 5.81 -2.91 -0.02 4.30 16 9 C 0.55 29.05 7.64 86.36 0.66 29.71 16 10 O -0.62 -38.92 14.53 -4.33 -0.06 -38.98 16 11 N -0.65 -25.73 2.94 -830.03 -2.44 -28.18 16 12 C 0.12 3.77 6.44 86.17 0.55 4.32 16 13 C -0.08 -2.22 6.10 29.77 0.18 -2.03 16 14 C 0.19 5.02 6.64 42.26 0.28 5.30 16 15 N -0.48 -11.87 10.18 -184.00 -1.87 -13.74 16 16 C 0.18 3.87 10.73 84.74 0.91 4.78 16 17 C -0.11 -2.62 6.87 36.42 0.25 -2.37 16 18 N 0.04 1.00 4.45 -46.35 -0.21 0.79 16 19 O -0.18 -4.73 18.53 18.89 0.35 -4.38 16 20 O -0.16 -3.98 18.50 18.88 0.35 -3.63 16 21 C 0.01 0.11 9.27 22.53 0.21 0.32 16 22 C -0.14 -3.55 5.81 -19.94 -0.12 -3.67 16 23 C 0.16 4.87 6.08 85.46 0.52 5.39 16 24 H 0.27 14.60 8.29 -92.70 -0.77 13.83 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.08 2.89 7.07 -2.39 -0.02 2.87 16 27 H 0.12 2.64 8.14 -2.38 -0.02 2.62 16 28 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.21 3.25 7.64 -2.91 -0.02 3.22 16 30 H 0.19 3.38 7.70 -2.91 -0.02 3.35 16 31 H 0.11 3.34 5.55 -2.39 -0.01 3.33 16 32 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -70.37 286.42 3.72 -66.65 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 1.18 Total: 13.61 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 4.14 Total: 14.82 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -4.26 Total: -88.52 kcal Atomic # 8 Polarization: -47.63 SS G_CDS: 0.64 Total: -46.99 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -70.37 3.72 -66.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332673060.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.952 kcal (2) G-P(sol) polarization free energy of solvation -70.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds