Wall clock time and date at job start Mon Mar 30 2020 01:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35958 * 126.96328 * 2 1 4 4 C 1.46803 * 125.14859 * 0.03722 * 3 2 1 5 5 O 1.21717 * 119.99837 * 349.53120 * 4 3 2 6 6 N 1.34773 * 120.00156 * 169.52915 * 4 3 2 7 7 C 1.46505 * 119.99863 * 185.25102 * 6 4 3 8 8 C 1.36782 * 120.00301 * 5.24829 * 6 4 3 9 9 H 1.08000 * 120.00031 * 317.43280 * 8 6 4 10 10 C 1.39074 * 119.99942 * 137.42790 * 8 6 4 11 11 N 1.31350 * 120.00242 * 349.11150 * 10 8 6 12 12 Si 1.86810 * 119.99864 * 169.11531 * 10 8 6 13 13 H 1.48490 * 109.47172 * 90.00001 * 12 10 8 14 14 H 1.48495 * 109.46880 * 210.00118 * 12 10 8 15 15 H 1.48505 * 109.46771 * 329.99980 * 12 10 8 16 16 O 1.34946 * 109.70821 * 180.02562 * 3 2 1 17 17 C 1.34799 * 110.86455 * 0.02562 * 16 3 2 18 18 C 1.38979 * 133.11517 * 180.02562 * 17 16 3 19 19 C 1.37777 * 120.03450 * 180.02562 * 18 17 16 20 20 C 1.39049 * 120.73202 * 359.97438 * 19 18 17 21 21 F 1.35100 * 119.87990 * 179.97438 * 20 19 18 22 22 C 1.37793 * 120.24560 * 0.25369 * 20 19 18 23 23 C 1.39757 * 119.57143 * 359.52313 * 22 20 19 24 24 H 1.08999 * 109.47159 * 90.02245 * 1 2 3 25 25 H 1.08995 * 109.47019 * 210.02139 * 1 2 3 26 26 H 1.09000 * 109.46425 * 330.02164 * 1 2 3 27 27 H 1.09001 * 109.47082 * 0.02562 * 7 6 4 28 28 H 1.09001 * 109.47040 * 120.02716 * 7 6 4 29 29 H 1.09002 * 109.46904 * 240.02912 * 7 6 4 30 30 H 0.96999 * 119.99692 * 179.97438 * 11 10 8 31 31 H 1.07998 * 119.98062 * 359.97438 * 18 17 16 32 32 H 1.08000 * 119.63499 * 179.97438 * 19 18 17 33 33 H 1.07993 * 120.21276 * 179.74352 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3246 1.0863 0.0000 4 6 1.8737 2.4834 0.0008 5 8 0.7002 2.7442 -0.1900 6 7 2.7590 3.4772 0.2128 7 6 2.2928 4.8613 0.3283 8 6 4.0928 3.1936 0.3203 9 1 4.4185 2.3383 0.8937 10 6 5.0295 4.0066 -0.3088 11 7 4.6366 4.9124 -1.1751 12 14 6.8465 3.8103 0.0781 13 1 7.4468 2.8215 -0.8529 14 1 7.5305 5.1187 -0.0809 15 1 7.0063 3.3347 1.4758 16 8 3.6133 0.6861 -0.0006 17 6 3.6982 -0.6593 -0.0015 18 6 4.7705 -1.5434 -0.0019 19 6 4.5438 -2.9024 -0.0035 20 6 3.2479 -3.4066 -0.0042 21 9 3.0454 -4.7423 -0.0062 22 6 2.1694 -2.5489 -0.0085 23 6 2.3861 -1.1683 -0.0022 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5141 26 1 -0.3632 0.8902 0.5135 27 1 1.2088 4.8900 0.2174 28 1 2.5687 5.2573 1.3056 29 1 2.7540 5.4663 -0.4524 30 1 5.2899 5.4796 -1.6136 31 1 5.7820 -1.1649 -0.0018 32 1 5.3818 -3.5836 -0.0042 33 1 1.1632 -2.9411 -0.0132 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334155623.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:20 Heat of formation + Delta-G solvation = -46.564237 kcal Electronic energy + Delta-G solvation = -21218.823477 eV Core-core repulsion = 17739.892559 eV Total energy + Delta-G solvation = -3478.930918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.78492 -42.01013 -38.51485 -37.20422 -35.11637 -33.35727 -31.69369 -30.19995 -29.49569 -27.47989 -26.34114 -24.87943 -23.16211 -22.30992 -20.22369 -19.48666 -18.22758 -17.51990 -16.60761 -16.24256 -15.85494 -15.43531 -15.23520 -14.77083 -14.54482 -14.08806 -13.86016 -13.71343 -13.29399 -12.81449 -12.71247 -12.49570 -12.19945 -12.00952 -11.72195 -11.56827 -11.31741 -11.24498 -11.08119 -10.70688 -10.55802 -10.45339 -9.67927 -9.38063 -8.90869 -8.23154 -7.90639 -7.57346 -6.47698 -4.29801 0.85607 1.34643 2.28830 3.04893 3.11109 3.12542 3.17613 3.68199 3.93632 4.09663 4.19721 4.48770 4.75150 4.86680 4.96615 5.08530 5.25797 5.45093 5.75039 5.80198 5.82454 6.05847 6.12612 6.15941 6.25944 6.37794 6.51208 6.57024 6.69737 6.80344 6.83641 7.16191 7.41661 7.52714 7.71231 8.20367 8.86578 9.18633 9.62028 10.48305 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.018876 B = 0.006516 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.023818 B = 4296.005659 C = 5669.087029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.148 4.148 3 C 0.052 3.948 4 C 0.525 3.475 5 O -0.581 6.581 6 N -0.414 5.414 7 C 0.077 3.923 8 C -0.341 4.341 9 H 0.103 0.897 10 C 0.050 3.950 11 N -0.857 5.857 12 Si 0.923 3.077 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.266 1.266 16 O -0.141 6.141 17 C 0.039 3.961 18 C -0.074 4.074 19 C -0.135 4.135 20 C 0.071 3.929 21 F -0.143 7.143 22 C -0.106 4.106 23 C -0.103 4.103 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.097 0.903 30 H 0.273 0.727 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 -10.104 2.436 10.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.152 4.152 3 C 0.001 3.999 4 C 0.314 3.686 5 O -0.469 6.469 6 N -0.129 5.129 7 C -0.066 4.066 8 C -0.469 4.469 9 H 0.120 0.880 10 C -0.158 4.158 11 N -0.493 5.493 12 Si 0.749 3.251 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.190 1.190 16 O -0.040 6.040 17 C -0.010 4.010 18 C -0.093 4.093 19 C -0.154 4.154 20 C 0.051 3.949 21 F -0.122 7.122 22 C -0.125 4.125 23 C -0.104 4.104 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.010 -9.580 2.229 9.836 hybrid contribution 1.042 -0.386 0.061 1.113 sum 1.032 -9.966 2.290 10.278 Atomic orbital electron populations 1.20183 0.88003 1.02616 1.02319 1.21104 0.96720 0.88946 1.08427 1.22352 0.80156 0.95404 1.01982 1.17078 0.86240 0.82126 0.83195 1.90697 1.17375 1.81966 1.56820 1.43327 1.06467 1.05413 1.57677 1.21828 0.98903 0.83841 1.01984 1.19676 0.80166 1.14614 1.32400 0.88019 1.25555 1.00817 0.95841 0.93538 1.69759 1.35609 1.20520 1.23386 0.85986 0.81643 0.78074 0.79424 1.19836 1.20514 1.19024 1.84753 1.27341 1.18041 1.73889 1.20028 0.94962 0.83617 1.02419 1.19753 0.97437 0.90097 1.02006 1.20763 0.95640 0.94846 1.04178 1.17271 0.93824 0.77029 1.06727 1.91468 1.95906 1.30408 1.94443 1.20340 0.98683 0.90876 1.02609 1.19538 0.93024 0.93092 1.04744 0.91441 0.92513 0.89605 0.92291 0.94032 0.88489 0.91611 0.84072 0.84021 0.84622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.25 9.72 36.01 0.35 -0.90 16 2 C -0.15 -2.90 6.39 -102.24 -0.65 -3.55 16 3 C 0.05 1.18 6.75 -36.94 -0.25 0.93 16 4 C 0.53 13.05 7.58 -12.80 -0.10 12.96 16 5 O -0.58 -14.80 14.14 5.17 0.07 -14.73 16 6 N -0.41 -10.50 2.89 -123.65 -0.36 -10.85 16 7 C 0.08 1.80 10.07 59.85 0.60 2.40 16 8 C -0.34 -8.65 7.90 -15.03 -0.12 -8.77 16 9 H 0.10 2.54 6.00 -52.49 -0.32 2.23 16 10 C 0.05 1.25 5.26 -17.45 -0.09 1.15 16 11 N -0.86 -22.14 11.19 55.50 0.62 -21.52 16 12 Si 0.92 19.13 29.57 -169.99 -5.03 14.10 16 13 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 14 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 15 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 16 O -0.14 -3.08 7.45 2.54 0.02 -3.07 16 17 C 0.04 0.72 7.40 -38.37 -0.28 0.44 16 18 C -0.07 -1.10 10.06 -39.48 -0.40 -1.50 16 19 C -0.14 -1.76 9.99 -39.45 -0.39 -2.15 16 20 C 0.07 0.99 7.29 -39.44 -0.29 0.71 16 21 F -0.14 -1.95 17.26 2.25 0.04 -1.91 16 22 C -0.11 -1.59 10.08 -39.18 -0.39 -1.98 16 23 C -0.10 -1.83 6.36 -105.19 -0.67 -2.50 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 1.57 6.65 -51.93 -0.35 1.22 16 27 H 0.06 1.32 6.91 -51.93 -0.36 0.96 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.10 2.39 5.88 -51.93 -0.31 2.08 16 30 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 31 H 0.14 1.79 8.06 -52.49 -0.42 1.36 16 32 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 291.02 15.07 4.39 4.39 Total: -1.00 -28.06 291.02 -5.93 -33.99 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -3.00 Total: 2.38 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -2.68 Total: -2.77 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.26 Total: -32.37 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.09 Total: -17.80 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.06 -5.93 -33.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334155623.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.574 kcal (2) G-P(sol) polarization free energy of solvation -28.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds