Wall clock time and date at job start Mon Mar 30 2020 01:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35958 * 126.96328 * 2 1 4 4 C 1.46803 * 125.14859 * 0.03722 * 3 2 1 5 5 O 1.21717 * 119.99837 * 349.53120 * 4 3 2 6 6 N 1.34773 * 120.00156 * 169.52915 * 4 3 2 7 7 C 1.46505 * 119.99863 * 185.25102 * 6 4 3 8 8 C 1.36782 * 120.00301 * 5.24829 * 6 4 3 9 9 H 1.08000 * 120.00031 * 317.43280 * 8 6 4 10 10 C 1.39074 * 119.99942 * 137.42790 * 8 6 4 11 11 N 1.31350 * 120.00242 * 349.11150 * 10 8 6 12 12 Si 1.86810 * 119.99864 * 169.11531 * 10 8 6 13 13 H 1.48490 * 109.47172 * 90.00001 * 12 10 8 14 14 H 1.48495 * 109.46880 * 210.00118 * 12 10 8 15 15 H 1.48505 * 109.46771 * 329.99980 * 12 10 8 16 16 O 1.34946 * 109.70821 * 180.02562 * 3 2 1 17 17 C 1.34799 * 110.86455 * 0.02562 * 16 3 2 18 18 C 1.38979 * 133.11517 * 180.02562 * 17 16 3 19 19 C 1.37777 * 120.03450 * 180.02562 * 18 17 16 20 20 C 1.39049 * 120.73202 * 359.97438 * 19 18 17 21 21 F 1.35100 * 119.87990 * 179.97438 * 20 19 18 22 22 C 1.37793 * 120.24560 * 0.25369 * 20 19 18 23 23 C 1.39757 * 119.57143 * 359.52313 * 22 20 19 24 24 H 1.08999 * 109.47159 * 90.02245 * 1 2 3 25 25 H 1.08995 * 109.47019 * 210.02139 * 1 2 3 26 26 H 1.09000 * 109.46425 * 330.02164 * 1 2 3 27 27 H 1.09001 * 109.47082 * 0.02562 * 7 6 4 28 28 H 1.09001 * 109.47040 * 120.02716 * 7 6 4 29 29 H 1.09002 * 109.46904 * 240.02912 * 7 6 4 30 30 H 0.96999 * 119.99692 * 179.97438 * 11 10 8 31 31 H 1.07998 * 119.98062 * 359.97438 * 18 17 16 32 32 H 1.08000 * 119.63499 * 179.97438 * 19 18 17 33 33 H 1.07993 * 120.21276 * 179.74352 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3246 1.0863 0.0000 4 6 1.8737 2.4834 0.0008 5 8 0.7002 2.7442 -0.1900 6 7 2.7590 3.4772 0.2128 7 6 2.2928 4.8613 0.3283 8 6 4.0928 3.1936 0.3203 9 1 4.4185 2.3383 0.8937 10 6 5.0295 4.0066 -0.3088 11 7 4.6366 4.9124 -1.1751 12 14 6.8465 3.8103 0.0781 13 1 7.4468 2.8215 -0.8529 14 1 7.5305 5.1187 -0.0809 15 1 7.0063 3.3347 1.4758 16 8 3.6133 0.6861 -0.0006 17 6 3.6982 -0.6593 -0.0015 18 6 4.7705 -1.5434 -0.0019 19 6 4.5438 -2.9024 -0.0035 20 6 3.2479 -3.4066 -0.0042 21 9 3.0454 -4.7423 -0.0062 22 6 2.1694 -2.5489 -0.0085 23 6 2.3861 -1.1683 -0.0022 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5141 26 1 -0.3632 0.8902 0.5135 27 1 1.2088 4.8900 0.2174 28 1 2.5687 5.2573 1.3056 29 1 2.7540 5.4663 -0.4524 30 1 5.2899 5.4796 -1.6136 31 1 5.7820 -1.1649 -0.0018 32 1 5.3818 -3.5836 -0.0042 33 1 1.1632 -2.9411 -0.0132 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334155623.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:19 Heat of formation + Delta-G solvation = -61.499492 kcal Electronic energy + Delta-G solvation = -21219.471118 eV Core-core repulsion = 17739.892559 eV Total energy + Delta-G solvation = -3479.578559 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.88503 -43.45350 -40.32957 -38.50083 -36.96787 -34.81803 -33.58514 -31.43463 -30.86032 -29.05633 -28.05010 -26.62775 -24.58814 -23.61336 -21.75146 -21.10043 -19.87899 -18.91802 -17.88368 -17.85163 -17.33173 -16.85815 -16.57314 -16.45169 -16.24382 -15.60995 -15.34446 -15.17669 -14.54675 -14.32136 -14.14086 -13.83775 -13.72400 -13.62558 -13.20115 -13.02364 -12.98340 -12.82466 -12.78452 -12.43909 -12.09304 -11.92576 -11.22382 -10.96923 -10.76708 -9.66523 -9.48649 -9.15513 -8.33457 -6.23822 -0.46593 0.11186 0.80762 1.42813 1.43851 1.55615 1.68650 2.21704 2.30811 2.46626 2.70069 3.02815 3.15722 3.51314 3.57539 3.84699 4.05469 4.15682 4.27700 4.43080 4.63204 4.67993 4.78515 4.82322 4.86381 4.95102 5.01384 5.12313 5.14101 5.25567 5.44032 5.51194 5.61449 5.84546 6.09735 6.31689 6.97464 7.31180 7.73802 8.63811 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.018876 B = 0.006516 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.023818 B = 4296.005659 C = 5669.087029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.126 4.126 3 C -0.002 4.002 4 C 0.519 3.481 5 O -0.601 6.601 6 N -0.434 5.434 7 C 0.083 3.917 8 C -0.356 4.356 9 H 0.100 0.900 10 C 0.008 3.992 11 N -0.891 5.891 12 Si 0.989 3.011 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.258 1.258 16 O -0.166 6.166 17 C 0.019 3.981 18 C -0.082 4.082 19 C -0.108 4.108 20 C 0.074 3.926 21 F -0.136 7.136 22 C -0.100 4.100 23 C -0.123 4.123 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.276 0.724 31 H 0.163 0.837 32 H 0.183 0.817 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 -13.217 2.809 13.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 C -0.052 4.052 4 C 0.308 3.692 5 O -0.490 6.490 6 N -0.149 5.149 7 C -0.060 4.060 8 C -0.483 4.483 9 H 0.118 0.882 10 C -0.196 4.196 11 N -0.528 5.528 12 Si 0.811 3.189 13 H -0.194 1.194 14 H -0.200 1.200 15 H -0.182 1.182 16 O -0.067 6.067 17 C -0.030 4.030 18 C -0.100 4.100 19 C -0.126 4.126 20 C 0.055 3.945 21 F -0.115 7.115 22 C -0.119 4.119 23 C -0.124 4.124 24 H 0.094 0.906 25 H 0.111 0.889 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.180 0.820 32 H 0.200 0.800 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.229 -12.705 2.609 13.028 hybrid contribution 0.588 0.302 -0.064 0.664 sum 1.817 -12.403 2.544 12.791 Atomic orbital electron populations 1.20268 0.86392 1.03422 1.03007 1.21558 0.97837 0.89008 1.04566 1.21949 0.81346 0.94845 1.07105 1.17462 0.86040 0.83387 0.82266 1.90644 1.17908 1.82941 1.57493 1.43554 1.06845 1.05953 1.58554 1.21739 0.98708 0.83468 1.02057 1.19844 0.80427 1.15087 1.32937 0.88248 1.26418 1.04877 0.95291 0.93053 1.69866 1.36978 1.21452 1.24456 0.85005 0.76275 0.78155 0.79481 1.19378 1.19968 1.18198 1.84615 1.26998 1.20011 1.75026 1.20638 0.96701 0.82653 1.03004 1.20125 0.97576 0.90291 1.01992 1.21214 0.96538 0.94445 1.00421 1.17361 0.94033 0.77221 1.05912 1.91502 1.95897 1.29784 1.94278 1.20558 1.00422 0.89580 1.01311 1.19580 0.92262 0.93815 1.06735 0.90631 0.88910 0.91510 0.92192 0.92876 0.89978 0.91404 0.81990 0.79982 0.82308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.44 9.72 71.24 0.69 -1.75 16 2 C -0.13 -4.91 6.39 -18.32 -0.12 -5.03 16 3 C 0.00 -0.10 6.75 23.98 0.16 0.06 16 4 C 0.52 26.98 7.58 86.48 0.66 27.64 16 5 O -0.60 -31.96 14.14 -4.40 -0.06 -32.02 16 6 N -0.43 -22.98 2.89 -663.32 -1.92 -24.90 16 7 C 0.08 4.05 10.07 127.77 1.29 5.33 16 8 C -0.36 -18.64 7.90 84.12 0.66 -17.98 16 9 H 0.10 5.14 6.00 -2.91 -0.02 5.13 16 10 C 0.01 0.39 5.26 84.97 0.45 0.83 16 11 N -0.89 -47.33 11.19 21.68 0.24 -47.09 16 12 Si 0.99 39.31 29.57 68.60 2.03 41.34 16 13 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 14 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 15 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 16 O -0.17 -7.42 7.45 -13.83 -0.10 -7.52 16 17 C 0.02 0.68 7.40 23.06 0.17 0.85 16 18 C -0.08 -2.17 10.06 22.34 0.22 -1.95 16 19 C -0.11 -2.29 9.99 22.36 0.22 -2.07 16 20 C 0.07 1.76 7.29 22.36 0.16 1.92 16 21 F -0.14 -3.06 17.26 44.97 0.78 -2.29 16 22 C -0.10 -2.65 10.08 22.53 0.23 -2.42 16 23 C -0.12 -4.18 6.36 -20.23 -0.13 -4.31 16 24 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 26 H 0.07 2.46 6.65 -2.39 -0.02 2.45 16 27 H 0.06 2.82 6.91 -2.39 -0.02 2.81 16 28 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.08 4.25 5.88 -2.39 -0.01 4.24 16 30 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 31 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 32 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -62.95 291.02 6.79 -56.16 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 1.16 Total: 15.21 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 4.67 Total: 1.12 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -1.67 Total: -71.99 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.17 Total: -39.55 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.29 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -62.95 6.79 -56.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334155623.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.344 kcal (2) G-P(sol) polarization free energy of solvation -62.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds