Wall clock time and date at job start Mon Mar 30 2020 01:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86804 * 119.99799 * 2 1 4 4 H 1.48496 * 109.47279 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46859 * 239.99439 * 3 2 1 6 6 H 1.48505 * 109.46903 * 120.00074 * 3 2 1 7 7 C 1.39958 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00162 * 151.13635 * 7 2 1 9 9 C 1.41074 * 119.99712 * 331.13601 * 7 2 1 10 10 C 1.40734 * 120.29941 * 335.46210 * 9 7 2 11 11 C 1.36470 * 119.93951 * 179.97438 * 10 9 7 12 12 C 1.38863 * 120.57674 * 0.02754 * 11 10 9 13 13 C 1.38224 * 120.61938 * 359.95272 * 12 11 10 14 14 C 1.38651 * 120.02806 * 359.76156 * 13 12 11 15 15 N 1.39124 * 120.27972 * 180.28327 * 14 13 12 16 16 C 1.34780 * 120.00141 * 331.27615 * 15 14 13 17 17 O 1.21277 * 119.99734 * 5.61877 * 16 15 14 18 18 C 1.50698 * 119.99711 * 185.62018 * 16 15 14 19 19 H 1.08998 * 110.36283 * 334.12876 * 18 16 15 20 20 C 1.54278 * 110.39698 * 211.68173 * 18 16 15 21 21 C 1.53858 * 108.92650 * 213.25326 * 20 18 16 22 22 C 1.55140 * 106.89616 * 47.25820 * 21 20 18 23 23 S 1.83090 * 110.40284 * 96.45780 * 18 16 15 24 24 H 0.96996 * 119.99718 * 173.73218 * 1 2 3 25 25 H 1.07999 * 120.03483 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.71101 * 179.97438 * 11 10 9 27 27 H 1.08006 * 119.69055 * 179.97438 * 12 11 10 28 28 H 1.07991 * 119.98480 * 180.02562 * 13 12 11 29 29 H 0.97007 * 119.99879 * 151.28557 * 15 14 13 30 30 H 1.08997 * 109.61200 * 333.17402 * 20 18 16 31 31 H 1.09005 * 109.60844 * 93.34051 * 20 18 16 32 32 H 1.08998 * 109.97983 * 287.90020 * 21 20 18 33 33 H 1.09001 * 110.01188 * 166.63419 * 21 20 18 34 34 H 1.09001 * 110.85496 * 199.70521 * 22 21 20 35 35 H 1.08997 * 110.85824 * 76.06150 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 1.2775 2.7465 -0.0006 5 1 3.0963 1.6964 -1.2124 6 1 3.0963 1.6964 1.2125 7 6 2.0083 -1.2121 0.0005 8 1 2.9877 -1.2704 -0.4509 9 6 1.4344 -2.3576 0.5908 10 6 0.4587 -2.2250 1.5963 11 6 -0.0921 -3.3382 2.1620 12 6 0.3019 -4.6060 1.7549 13 6 1.2579 -4.7635 0.7691 14 6 1.8299 -3.6499 0.1730 15 7 2.7883 -3.8024 -0.8239 16 6 3.5797 -4.8932 -0.8367 17 8 3.3899 -5.7894 -0.0419 18 6 4.7004 -4.9993 -1.8385 19 1 4.4771 -4.4014 -2.7221 20 6 4.9351 -6.4733 -2.2288 21 6 6.4335 -6.6832 -2.5080 22 6 7.2071 -6.0263 -1.3346 23 16 6.2813 -4.4620 -1.0872 24 1 -0.4849 -0.8350 -0.0917 25 1 0.1460 -1.2433 1.9201 26 1 -0.8403 -3.2321 2.9336 27 1 -0.1431 -5.4772 2.2126 28 1 1.5564 -5.7542 0.4600 29 1 2.8870 -3.1234 -1.5097 30 1 4.6208 -7.1226 -1.4117 31 1 4.3596 -6.7109 -3.1236 32 1 6.7077 -6.2052 -3.4485 33 1 6.6590 -7.7487 -2.5525 34 1 8.2409 -5.8252 -1.6156 35 1 7.1609 -6.6500 -0.4419 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334590134.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:14 Heat of formation + Delta-G solvation = -27.968520 kcal Electronic energy + Delta-G solvation = -18954.503701 eV Core-core repulsion = 16042.592330 eV Total energy + Delta-G solvation = -2911.911371 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.76017 -37.54206 -35.71898 -33.94680 -33.82527 -30.40727 -29.37951 -28.27686 -25.52102 -24.86649 -22.10408 -21.19662 -20.62323 -19.58820 -18.06359 -17.29331 -16.66612 -16.09220 -15.38123 -14.73196 -14.55231 -14.26816 -14.07063 -13.84281 -13.24873 -13.05165 -12.73242 -12.34969 -12.10849 -11.88752 -11.81790 -11.62577 -11.40677 -11.04497 -10.97670 -10.72869 -10.43744 -10.37876 -9.98651 -9.73110 -9.43384 -9.04831 -8.85972 -7.67606 -7.62320 -7.40125 -6.96064 -4.46315 1.47944 2.21709 2.64791 2.81799 3.12940 3.24435 3.34277 3.50341 3.69576 3.96736 4.39392 4.51653 4.62753 4.68839 4.97563 5.07378 5.20360 5.41187 5.46621 5.52032 5.59606 5.69785 6.02413 6.22060 6.36512 6.49323 6.80120 6.95748 7.14521 7.38905 7.51324 7.70616 7.77007 7.92140 8.01879 8.22677 8.34149 8.66118 8.75276 8.91602 9.96170 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.005821 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.014070 B = 4809.233247 C = 6009.796283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.045 3.955 3 Si 1.060 2.940 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.075 0.925 9 C 0.092 3.908 10 C -0.208 4.208 11 C -0.092 4.092 12 C -0.243 4.243 13 C -0.080 4.080 14 C 0.005 3.995 15 N -0.626 5.626 16 C 0.513 3.487 17 O -0.530 6.530 18 C -0.069 4.069 19 H 0.114 0.886 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.081 4.081 23 S -0.242 6.242 24 H 0.300 0.700 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.404 0.596 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.555 -7.122 -6.756 13.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.178 4.178 3 Si 0.884 3.116 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.093 0.907 9 C 0.088 3.912 10 C -0.228 4.228 11 C -0.111 4.111 12 C -0.262 4.262 13 C -0.100 4.100 14 C -0.089 4.089 15 N -0.267 5.267 16 C 0.297 3.703 17 O -0.408 6.408 18 C -0.201 4.201 19 H 0.132 0.868 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.229 4.229 23 S -0.016 6.016 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.138 0.862 29 H 0.239 0.761 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.532 -5.052 -5.668 12.187 hybrid contribution -0.100 -2.288 -0.816 2.431 sum 9.432 -7.339 -6.484 13.597 Atomic orbital electron populations 1.70465 1.08285 1.34313 1.27928 1.26959 0.95524 1.04198 0.91158 0.83704 0.75783 0.73977 0.78158 1.19836 1.20093 1.19913 1.20306 1.04787 0.94899 1.35656 0.90740 1.17428 0.92225 0.90572 0.90984 1.20696 1.03967 0.97401 1.00762 1.20398 0.98715 0.93224 0.98722 1.20270 1.05087 0.95737 1.05154 1.20933 0.94976 0.97470 0.96663 1.17632 0.99416 0.93980 0.97866 1.42794 1.33480 1.21928 1.28455 1.19815 0.81979 0.83286 0.85201 1.90584 1.70952 1.38986 1.40316 1.23830 0.94795 1.01086 1.00373 0.86833 1.22334 0.96541 0.93193 1.03888 1.22548 0.93610 1.01996 0.98061 1.24327 1.01181 0.95757 1.01614 1.87846 1.10047 1.21401 1.82286 0.88718 0.87515 0.89253 0.89060 0.86150 0.76101 0.88646 0.89660 0.90280 0.89585 0.87814 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.16 12.32 55.55 0.68 -19.47 16 2 C 0.04 1.10 4.85 -17.32 -0.08 1.01 16 3 Si 1.06 21.05 30.02 -169.99 -5.10 15.95 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.53 -13.37 8.31 -37.86 -0.31 -13.69 16 8 H 0.07 1.82 7.27 -52.49 -0.38 1.44 16 9 C 0.09 2.39 5.30 -106.65 -0.57 1.83 16 10 C -0.21 -5.33 8.01 -39.28 -0.31 -5.65 16 11 C -0.09 -2.18 9.97 -39.99 -0.40 -2.57 16 12 C -0.24 -5.70 10.04 -39.36 -0.39 -6.10 16 13 C -0.08 -1.96 8.76 -39.43 -0.35 -2.30 16 14 C 0.00 0.12 6.44 -83.17 -0.54 -0.42 16 15 N -0.63 -13.10 5.02 -9.48 -0.05 -13.15 16 16 C 0.51 9.90 6.86 -10.98 -0.08 9.83 16 17 O -0.53 -11.70 12.81 5.56 0.07 -11.63 16 18 C -0.07 -1.00 3.65 -27.22 -0.10 -1.10 16 19 H 0.11 1.41 8.12 -51.93 -0.42 0.99 16 20 C -0.12 -1.41 5.90 -25.62 -0.15 -1.56 16 21 C -0.12 -1.11 6.46 -25.15 -0.16 -1.27 16 22 C -0.08 -0.84 7.38 38.29 0.28 -0.56 16 23 S -0.24 -3.61 22.68 -107.50 -2.44 -6.05 16 24 H 0.30 7.89 6.98 -40.82 -0.28 7.60 16 25 H 0.11 2.78 6.57 -52.49 -0.34 2.44 16 26 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 27 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 28 H 0.12 2.89 5.70 -52.49 -0.30 2.59 16 29 H 0.40 7.74 7.67 -40.82 -0.31 7.42 16 30 H 0.10 1.31 6.91 -51.93 -0.36 0.95 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 302.13 15.07 4.55 4.55 Total: -1.00 -29.29 302.13 -9.60 -38.89 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -4.16 Total: 13.47 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -3.16 Total: -22.56 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.64 Total: -32.62 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.07 Total: -11.63 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.10 Total: 15.95 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -2.44 Total: -6.05 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.29 -9.60 -38.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334590134.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.924 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds