Wall clock time and date at job start Mon Mar 30 2020 01:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86804 * 119.99799 * 2 1 4 4 H 1.48496 * 109.47279 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46859 * 239.99439 * 3 2 1 6 6 H 1.48505 * 109.46903 * 120.00074 * 3 2 1 7 7 C 1.39958 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00162 * 151.13635 * 7 2 1 9 9 C 1.41074 * 119.99712 * 331.13601 * 7 2 1 10 10 C 1.40734 * 120.29941 * 335.46210 * 9 7 2 11 11 C 1.36470 * 119.93951 * 179.97438 * 10 9 7 12 12 C 1.38863 * 120.57674 * 0.02754 * 11 10 9 13 13 C 1.38224 * 120.61938 * 359.95272 * 12 11 10 14 14 C 1.38651 * 120.02806 * 359.76156 * 13 12 11 15 15 N 1.39124 * 120.27972 * 180.28327 * 14 13 12 16 16 C 1.34780 * 120.00141 * 331.27615 * 15 14 13 17 17 O 1.21277 * 119.99734 * 5.61877 * 16 15 14 18 18 C 1.50698 * 119.99711 * 185.62018 * 16 15 14 19 19 H 1.08998 * 110.36283 * 334.12876 * 18 16 15 20 20 C 1.54278 * 110.39698 * 211.68173 * 18 16 15 21 21 C 1.53858 * 108.92650 * 213.25326 * 20 18 16 22 22 C 1.55140 * 106.89616 * 47.25820 * 21 20 18 23 23 S 1.83090 * 110.40284 * 96.45780 * 18 16 15 24 24 H 0.96996 * 119.99718 * 173.73218 * 1 2 3 25 25 H 1.07999 * 120.03483 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.71101 * 179.97438 * 11 10 9 27 27 H 1.08006 * 119.69055 * 179.97438 * 12 11 10 28 28 H 1.07991 * 119.98480 * 180.02562 * 13 12 11 29 29 H 0.97007 * 119.99879 * 151.28557 * 15 14 13 30 30 H 1.08997 * 109.61200 * 333.17402 * 20 18 16 31 31 H 1.09005 * 109.60844 * 93.34051 * 20 18 16 32 32 H 1.08998 * 109.97983 * 287.90020 * 21 20 18 33 33 H 1.09001 * 110.01188 * 166.63419 * 21 20 18 34 34 H 1.09001 * 110.85496 * 199.70521 * 22 21 20 35 35 H 1.08997 * 110.85824 * 76.06150 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 1.2775 2.7465 -0.0006 5 1 3.0963 1.6964 -1.2124 6 1 3.0963 1.6964 1.2125 7 6 2.0083 -1.2121 0.0005 8 1 2.9877 -1.2704 -0.4509 9 6 1.4344 -2.3576 0.5908 10 6 0.4587 -2.2250 1.5963 11 6 -0.0921 -3.3382 2.1620 12 6 0.3019 -4.6060 1.7549 13 6 1.2579 -4.7635 0.7691 14 6 1.8299 -3.6499 0.1730 15 7 2.7883 -3.8024 -0.8239 16 6 3.5797 -4.8932 -0.8367 17 8 3.3899 -5.7894 -0.0419 18 6 4.7004 -4.9993 -1.8385 19 1 4.4771 -4.4014 -2.7221 20 6 4.9351 -6.4733 -2.2288 21 6 6.4335 -6.6832 -2.5080 22 6 7.2071 -6.0263 -1.3346 23 16 6.2813 -4.4620 -1.0872 24 1 -0.4849 -0.8350 -0.0917 25 1 0.1460 -1.2433 1.9201 26 1 -0.8403 -3.2321 2.9336 27 1 -0.1431 -5.4772 2.2126 28 1 1.5564 -5.7542 0.4600 29 1 2.8870 -3.1234 -1.5097 30 1 4.6208 -7.1226 -1.4117 31 1 4.3596 -6.7109 -3.1236 32 1 6.7077 -6.2052 -3.4485 33 1 6.6590 -7.7487 -2.5525 34 1 8.2409 -5.8252 -1.6156 35 1 7.1609 -6.6500 -0.4419 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334590134.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:14 Heat of formation + Delta-G solvation = -43.959715 kcal Electronic energy + Delta-G solvation = -18955.197132 eV Core-core repulsion = 16042.592330 eV Total energy + Delta-G solvation = -2912.604801 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.40532 -39.30554 -36.72751 -35.78603 -35.58052 -31.67759 -31.28365 -29.88099 -27.08538 -26.25827 -23.65962 -22.88616 -21.89005 -21.17015 -19.89590 -18.80150 -18.05610 -17.60184 -16.67833 -16.42922 -16.10554 -15.67948 -15.50518 -15.04784 -14.87428 -14.62564 -14.23053 -13.93601 -13.81701 -13.38392 -13.06743 -12.77069 -12.62056 -12.50253 -12.42685 -12.21193 -11.97210 -11.83736 -11.54425 -11.20659 -11.00538 -10.85265 -10.62680 -9.58262 -9.33369 -8.85889 -8.82109 -6.41701 0.27755 0.83888 0.91264 1.27724 1.51372 1.63200 1.80133 1.96362 2.21015 2.30940 2.65656 3.41322 3.53484 3.62500 3.76237 3.96818 4.07566 4.30851 4.39260 4.43533 4.63729 4.65838 4.67426 4.86948 4.93199 4.93823 5.05184 5.18266 5.28033 5.46698 5.64123 5.74864 5.89968 6.00808 6.10934 6.33745 6.56840 6.82471 6.87727 7.23061 8.00232 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.005821 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.014070 B = 4809.233247 C = 6009.796283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.013 3.987 3 Si 1.110 2.890 4 H -0.271 1.271 5 H -0.254 1.254 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.065 3.935 10 C -0.228 4.228 11 C -0.096 4.096 12 C -0.242 4.242 13 C -0.097 4.097 14 C 0.000 4.000 15 N -0.630 5.630 16 C 0.512 3.488 17 O -0.560 6.560 18 C -0.057 4.057 19 H 0.136 0.864 20 C -0.120 4.120 21 C -0.113 4.113 22 C -0.065 4.065 23 S -0.309 6.309 24 H 0.285 0.715 25 H 0.094 0.906 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.122 0.878 29 H 0.410 0.590 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.215 -7.865 -8.028 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.205 4.205 3 Si 0.927 3.073 4 H -0.196 1.196 5 H -0.178 1.178 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.094 0.906 9 C 0.060 3.940 10 C -0.248 4.248 11 C -0.115 4.115 12 C -0.262 4.262 13 C -0.117 4.117 14 C -0.095 4.095 15 N -0.272 5.272 16 C 0.298 3.702 17 O -0.440 6.440 18 C -0.188 4.188 19 H 0.154 0.846 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.213 4.213 23 S -0.083 6.083 24 H 0.097 0.903 25 H 0.112 0.888 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.140 0.860 29 H 0.246 0.754 30 H 0.090 0.910 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.148 0.852 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.207 -5.819 -6.962 14.420 hybrid contribution -0.593 -2.215 -0.376 2.324 sum 10.614 -8.034 -7.338 15.200 Atomic orbital electron populations 1.70571 1.08982 1.33315 1.29799 1.28266 0.95511 1.07086 0.89670 0.83087 0.74894 0.70225 0.79062 1.19572 1.17759 1.19642 1.20457 1.04973 0.95531 1.36551 0.90588 1.17755 0.92976 0.91543 0.91680 1.20732 1.04956 0.97501 1.01567 1.20662 0.98997 0.92755 0.99076 1.20621 1.04405 0.96610 1.04556 1.21130 0.95623 0.97529 0.97441 1.17846 0.99720 0.93642 0.98269 1.42865 1.33406 1.22867 1.28013 1.20671 0.82191 0.81860 0.85511 1.90554 1.71790 1.39855 1.41831 1.23846 0.92200 1.03670 0.99098 0.84633 1.22416 0.99147 0.90399 1.03916 1.22562 0.90868 1.03713 0.97948 1.24517 1.01919 0.92488 1.02341 1.88073 1.11467 1.25628 1.83129 0.90317 0.88800 0.86621 0.86467 0.86014 0.75363 0.90972 0.87339 0.88351 0.86809 0.85161 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.04 12.32 21.83 0.27 -41.77 16 2 C 0.01 0.64 4.85 85.26 0.41 1.06 16 3 Si 1.11 42.11 30.02 68.60 2.06 44.17 16 4 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 6 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.55 -28.23 8.31 23.38 0.19 -28.03 16 8 H 0.08 3.78 7.27 -2.91 -0.02 3.76 16 9 C 0.06 3.44 5.30 -21.18 -0.11 3.33 16 10 C -0.23 -11.93 8.01 22.47 0.18 -11.75 16 11 C -0.10 -4.57 9.97 22.01 0.22 -4.35 16 12 C -0.24 -11.30 10.04 22.42 0.22 -11.07 16 13 C -0.10 -4.77 8.76 22.37 0.20 -4.57 16 14 C 0.00 -0.01 6.44 38.88 0.25 0.24 16 15 N -0.63 -26.68 5.02 -302.28 -1.52 -28.20 16 16 C 0.51 19.71 6.86 87.66 0.60 20.32 16 17 O -0.56 -24.94 12.81 -3.02 -0.04 -24.98 16 18 C -0.06 -1.57 3.65 30.28 0.11 -1.46 16 19 H 0.14 3.11 8.12 -2.39 -0.02 3.09 16 20 C -0.12 -2.51 5.90 31.32 0.18 -2.32 16 21 C -0.11 -1.58 6.46 31.62 0.20 -1.37 16 22 C -0.07 -1.18 7.38 72.72 0.54 -0.64 16 23 S -0.31 -8.88 22.68 -56.49 -1.28 -10.16 16 24 H 0.28 15.55 6.98 -92.71 -0.65 14.90 16 25 H 0.09 5.07 6.57 -2.91 -0.02 5.05 16 26 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 27 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 28 H 0.12 5.91 5.70 -2.92 -0.02 5.89 16 29 H 0.41 15.92 7.67 -92.70 -0.71 15.20 16 30 H 0.07 1.88 6.91 -2.39 -0.02 1.86 16 31 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -65.14 302.13 3.22 -61.92 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: 0.53 Total: 39.65 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 3.20 Total: -40.64 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: -1.25 Total: -69.97 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.04 Total: -24.98 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.06 Total: 44.17 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.28 Total: -10.16 kcal Total: -65.14 3.22 -61.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334590134.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.962 kcal (2) G-P(sol) polarization free energy of solvation -65.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds