Wall clock time and date at job start Mon Mar 30 2020 02:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47027 * 2 1 4 4 N 1.46500 * 109.47462 * 120.00311 * 2 1 3 5 5 C 1.34774 * 119.99656 * 275.00014 * 4 2 1 6 6 O 1.21685 * 120.00387 * 359.97438 * 5 4 2 7 7 C 1.46378 * 119.99813 * 179.97438 * 5 4 2 8 8 H 1.08002 * 119.99949 * 0.02562 * 7 5 4 9 9 C 1.40049 * 120.00332 * 179.97438 * 7 5 4 10 10 N 1.30671 * 119.99426 * 0.02562 * 9 7 5 11 11 Si 1.86790 * 120.00403 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47453 * 90.00057 * 11 9 7 13 13 H 1.48500 * 109.47277 * 210.00001 * 11 9 7 14 14 H 1.48504 * 109.47266 * 330.00226 * 11 9 7 15 15 C 1.50700 * 109.46891 * 240.00105 * 2 1 3 16 16 C 1.34008 * 124.93048 * 99.99556 * 15 2 1 17 17 C 1.46778 * 106.19195 * 179.97438 * 16 15 2 18 18 C 1.39469 * 134.35126 * 180.02562 * 17 16 15 19 19 C 1.36714 * 119.76123 * 179.97438 * 18 17 16 20 20 C 1.38740 * 120.44102 * 0.02562 * 19 18 17 21 21 C 1.38045 * 120.65278 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.11240 * 179.97438 * 21 20 19 23 23 C 1.39136 * 119.77270 * 0.02562 * 21 20 19 24 24 O 1.34441 * 124.92906 * 279.97953 * 15 2 1 25 25 H 1.08997 * 109.46509 * 299.99460 * 1 2 3 26 26 H 1.08989 * 109.47334 * 59.99784 * 1 2 3 27 27 H 1.08997 * 109.47027 * 180.02562 * 1 2 3 28 28 H 0.97004 * 120.00263 * 94.99388 * 4 2 1 29 29 H 0.97006 * 119.99893 * 179.97438 * 10 9 7 30 30 H 1.08000 * 126.90058 * 359.96559 * 16 15 2 31 31 H 1.07994 * 120.11774 * 359.97438 * 18 17 16 32 32 H 1.08006 * 119.77991 * 180.02562 * 19 18 17 33 33 H 1.08004 * 119.67851 * 180.27314 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0185 -0.6907 1.1961 5 6 2.1472 -0.0183 2.3570 6 8 1.8582 1.1625 2.4117 7 6 2.6347 -0.7085 3.5523 8 1 2.8916 -1.7564 3.5038 9 6 2.7690 -0.0098 4.7586 10 7 2.4586 1.2582 4.8172 11 14 3.3917 -0.8903 6.2837 12 1 4.8717 -0.7861 6.3460 13 1 2.8001 -0.2640 7.4932 14 1 2.9984 -2.3211 6.2245 15 6 2.0323 -0.7104 -1.2305 16 6 2.4679 -0.1033 -2.3429 17 6 2.8546 -1.1743 -3.2691 18 6 3.3731 -1.2039 -4.5635 19 6 3.6318 -2.4048 -5.1636 20 6 3.3815 -3.5937 -4.4938 21 6 2.8684 -3.5850 -3.2122 22 9 2.6284 -4.7492 -2.5703 23 6 2.5984 -2.3731 -2.5843 24 8 2.1088 -2.0452 -1.3714 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 2.2491 -1.6319 1.1525 29 1 2.5513 1.7421 5.6528 30 1 2.5231 0.9603 -2.5220 31 1 3.5695 -0.2816 -5.0898 32 1 4.0337 -2.4281 -6.1658 33 1 3.5946 -4.5354 -4.9779 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334631180.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:41 Heat of formation + Delta-G solvation = -58.748028 kcal Electronic energy + Delta-G solvation = -20497.061222 eV Core-core repulsion = 17017.601975 eV Total energy + Delta-G solvation = -3479.459247 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.98167 -42.50077 -38.13157 -37.45929 -34.47996 -32.62509 -32.31285 -30.30810 -30.15072 -28.51849 -26.18292 -23.94396 -23.08704 -21.75399 -20.95312 -19.57817 -17.97623 -17.57256 -17.27825 -16.51468 -16.07635 -15.52376 -15.42556 -15.22738 -14.85329 -14.26399 -13.78716 -13.34245 -13.28120 -13.05300 -12.91851 -12.42490 -12.21361 -12.02989 -11.77825 -11.72295 -11.48130 -11.08974 -11.04486 -10.87308 -10.49650 -10.25375 -10.01515 -8.89702 -8.77285 -8.18423 -7.72544 -7.67984 -6.23858 -4.69217 0.65290 1.08478 2.27426 2.54188 3.13022 3.20112 3.23766 3.41963 3.98049 4.06134 4.24419 4.52237 4.55422 4.70795 4.84009 4.99592 5.04617 5.19840 5.51767 5.58921 5.66638 5.71081 5.80919 5.90555 5.94310 6.09024 6.16634 6.27972 6.34732 6.50735 6.66856 7.11012 7.40005 7.81649 7.96172 8.26873 8.98098 9.41364 10.52297 10.70278 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026109 B = 0.004093 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.161112 B = 6838.512729 C = 7429.876562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.225 3.775 3 H 0.111 0.889 4 N -0.762 5.762 5 C 0.556 3.444 6 O -0.578 6.578 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.088 3.912 10 N -0.766 5.766 11 Si 0.909 3.091 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.264 1.264 15 C 0.066 3.934 16 C -0.217 4.217 17 C -0.094 4.094 18 C -0.084 4.084 19 C -0.112 4.112 20 C -0.138 4.138 21 C 0.117 3.883 22 F -0.133 7.133 23 C 0.012 3.988 24 O -0.177 6.177 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.386 0.614 29 H 0.269 0.731 30 H 0.164 0.836 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.060 -6.420 -17.895 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.118 3.882 3 H 0.129 0.871 4 N -0.418 5.418 5 C 0.361 3.639 6 O -0.461 6.461 7 C -0.579 4.579 8 H 0.087 0.913 9 C -0.132 4.132 10 N -0.395 5.395 11 Si 0.733 3.267 12 H -0.197 1.197 13 H -0.204 1.204 14 H -0.189 1.189 15 C 0.017 3.983 16 C -0.236 4.236 17 C -0.095 4.095 18 C -0.102 4.102 19 C -0.130 4.130 20 C -0.157 4.157 21 C 0.097 3.903 22 F -0.112 7.112 23 C -0.037 4.037 24 O -0.077 6.077 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.218 0.782 29 H 0.080 0.920 30 H 0.182 0.818 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.738 -5.606 -17.488 18.380 hybrid contribution 0.426 -1.066 0.716 1.353 sum 1.164 -6.672 -16.773 18.088 Atomic orbital electron populations 1.22230 0.94680 1.02173 1.02631 1.19360 0.93837 0.95683 0.79297 0.87097 1.46303 1.73321 1.13326 1.08832 1.18242 0.77860 0.86387 0.81390 1.90599 1.55007 1.16260 1.84263 1.20872 1.46660 0.97260 0.93142 0.91318 1.25699 0.93273 0.94492 0.99729 1.70013 1.34889 1.08182 1.26414 0.86349 0.79362 0.80284 0.80663 1.19702 1.20401 1.18855 1.23216 0.97593 0.79472 0.97988 1.22218 1.08800 0.99609 0.92982 1.19834 1.02183 0.91854 0.95612 1.20338 0.98434 0.98811 0.92623 1.20569 1.01010 0.90986 1.00409 1.20870 1.02222 1.00513 0.92110 1.16537 1.04591 0.77612 0.91519 1.91524 1.92354 1.45841 1.81440 1.19586 1.03374 0.94655 0.86066 1.84051 1.68217 1.24453 1.30992 0.90339 0.92517 0.92656 0.78162 0.92029 0.81807 0.84855 0.84489 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.47 37.16 0.35 -2.37 16 2 C 0.22 4.26 3.01 -69.08 -0.21 4.05 16 3 H 0.11 2.21 7.55 -51.93 -0.39 1.82 16 4 N -0.76 -17.17 5.06 -56.34 -0.29 -17.46 16 5 C 0.56 15.53 7.71 -12.99 -0.10 15.43 16 6 O -0.58 -18.01 14.68 5.20 0.08 -17.94 16 7 C -0.54 -15.28 9.54 -35.63 -0.34 -15.62 16 8 H 0.07 1.80 7.85 -52.49 -0.41 1.38 16 9 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 10 N -0.77 -22.64 11.83 55.55 0.66 -21.98 16 11 Si 0.91 20.11 29.56 -169.99 -5.02 15.08 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 14 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 15 C 0.07 1.11 6.05 -35.80 -0.22 0.89 16 16 C -0.22 -3.12 10.99 -37.62 -0.41 -3.53 16 17 C -0.09 -1.29 6.40 -105.17 -0.67 -1.96 16 18 C -0.08 -0.87 10.05 -39.67 -0.40 -1.27 16 19 C -0.11 -0.99 9.98 -39.95 -0.40 -1.39 16 20 C -0.14 -1.40 9.99 -39.47 -0.39 -1.79 16 21 C 0.12 1.59 7.32 -39.32 -0.29 1.31 16 22 F -0.13 -1.93 17.27 2.25 0.04 -1.89 16 23 C 0.01 0.18 7.40 -38.43 -0.28 -0.10 16 24 O -0.18 -3.08 10.19 3.81 0.04 -3.04 16 25 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 26 H 0.06 0.81 8.14 -51.94 -0.42 0.38 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.39 8.18 8.25 -40.82 -0.34 7.84 16 29 H 0.27 7.20 8.29 -40.82 -0.34 6.87 16 30 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 LS Contribution 301.92 15.07 4.55 4.55 Total: -1.00 -33.44 301.92 -6.64 -40.08 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -3.23 Total: 6.62 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -3.46 Total: -4.03 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.37 Total: -39.44 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: 0.12 Total: -20.97 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.44 -6.64 -40.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334631180.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.667 kcal (2) G-P(sol) polarization free energy of solvation -33.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds