Wall clock time and date at job start Mon Mar 30 2020 02:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47027 * 2 1 4 4 N 1.46500 * 109.47462 * 120.00311 * 2 1 3 5 5 C 1.34774 * 119.99656 * 275.00014 * 4 2 1 6 6 O 1.21685 * 120.00387 * 359.97438 * 5 4 2 7 7 C 1.46378 * 119.99813 * 179.97438 * 5 4 2 8 8 H 1.08002 * 119.99949 * 0.02562 * 7 5 4 9 9 C 1.40049 * 120.00332 * 179.97438 * 7 5 4 10 10 N 1.30671 * 119.99426 * 0.02562 * 9 7 5 11 11 Si 1.86790 * 120.00403 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47453 * 90.00057 * 11 9 7 13 13 H 1.48500 * 109.47277 * 210.00001 * 11 9 7 14 14 H 1.48504 * 109.47266 * 330.00226 * 11 9 7 15 15 C 1.50700 * 109.46891 * 240.00105 * 2 1 3 16 16 C 1.34008 * 124.93048 * 99.99556 * 15 2 1 17 17 C 1.46778 * 106.19195 * 179.97438 * 16 15 2 18 18 C 1.39469 * 134.35126 * 180.02562 * 17 16 15 19 19 C 1.36714 * 119.76123 * 179.97438 * 18 17 16 20 20 C 1.38740 * 120.44102 * 0.02562 * 19 18 17 21 21 C 1.38045 * 120.65278 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.11240 * 179.97438 * 21 20 19 23 23 C 1.39136 * 119.77270 * 0.02562 * 21 20 19 24 24 O 1.34441 * 124.92906 * 279.97953 * 15 2 1 25 25 H 1.08997 * 109.46509 * 299.99460 * 1 2 3 26 26 H 1.08989 * 109.47334 * 59.99784 * 1 2 3 27 27 H 1.08997 * 109.47027 * 180.02562 * 1 2 3 28 28 H 0.97004 * 120.00263 * 94.99388 * 4 2 1 29 29 H 0.97006 * 119.99893 * 179.97438 * 10 9 7 30 30 H 1.08000 * 126.90058 * 359.96559 * 16 15 2 31 31 H 1.07994 * 120.11774 * 359.97438 * 18 17 16 32 32 H 1.08006 * 119.77991 * 180.02562 * 19 18 17 33 33 H 1.08004 * 119.67851 * 180.27314 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0185 -0.6907 1.1961 5 6 2.1472 -0.0183 2.3570 6 8 1.8582 1.1625 2.4117 7 6 2.6347 -0.7085 3.5523 8 1 2.8916 -1.7564 3.5038 9 6 2.7690 -0.0098 4.7586 10 7 2.4586 1.2582 4.8172 11 14 3.3917 -0.8903 6.2837 12 1 4.8717 -0.7861 6.3460 13 1 2.8001 -0.2640 7.4932 14 1 2.9984 -2.3211 6.2245 15 6 2.0323 -0.7104 -1.2305 16 6 2.4679 -0.1033 -2.3429 17 6 2.8546 -1.1743 -3.2691 18 6 3.3731 -1.2039 -4.5635 19 6 3.6318 -2.4048 -5.1636 20 6 3.3815 -3.5937 -4.4938 21 6 2.8684 -3.5850 -3.2122 22 9 2.6284 -4.7492 -2.5703 23 6 2.5984 -2.3731 -2.5843 24 8 2.1088 -2.0452 -1.3714 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 2.2491 -1.6319 1.1525 29 1 2.5513 1.7421 5.6528 30 1 2.5231 0.9603 -2.5220 31 1 3.5695 -0.2816 -5.0898 32 1 4.0337 -2.4281 -6.1658 33 1 3.5946 -4.5354 -4.9779 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334631180.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:40 Heat of formation + Delta-G solvation = -81.162148 kcal Electronic energy + Delta-G solvation = -20498.033171 eV Core-core repulsion = 17017.601975 eV Total energy + Delta-G solvation = -3480.431196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.00369 -43.61307 -39.69780 -38.80010 -36.23557 -34.59205 -33.66234 -31.82660 -31.14891 -29.71066 -28.25219 -25.23931 -24.07898 -22.96770 -22.23650 -21.38730 -19.54343 -18.87987 -18.44619 -17.65673 -17.57834 -17.16598 -16.64452 -16.32999 -16.10127 -15.86412 -15.25240 -15.05768 -14.44817 -14.39149 -14.24154 -14.01580 -13.48757 -13.34127 -13.07279 -12.87819 -12.81954 -12.77020 -12.66858 -12.43273 -12.42122 -12.03388 -11.07590 -10.95476 -9.95203 -9.75462 -9.63896 -9.17240 -8.32909 -6.90029 -0.30194 0.16220 1.14353 1.38885 1.39537 1.43987 1.55227 2.22640 2.42947 2.54078 2.89594 3.02296 3.23856 3.56560 3.72665 3.87093 3.99356 4.08948 4.22078 4.26028 4.34902 4.60238 4.66486 4.71365 4.82429 5.01235 5.07637 5.18676 5.28825 5.30702 5.35431 5.61618 5.81097 5.96394 6.12121 6.20096 6.83254 7.40096 8.41302 8.61945 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026109 B = 0.004093 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.161112 B = 6838.512729 C = 7429.876562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.226 3.774 3 H 0.096 0.904 4 N -0.754 5.754 5 C 0.544 3.456 6 O -0.621 6.621 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.033 3.967 10 N -0.816 5.816 11 Si 0.996 3.004 12 H -0.261 1.261 13 H -0.269 1.269 14 H -0.253 1.253 15 C 0.032 3.968 16 C -0.195 4.195 17 C -0.113 4.113 18 C -0.076 4.076 19 C -0.099 4.099 20 C -0.116 4.116 21 C 0.081 3.919 22 F -0.148 7.148 23 C -0.019 4.019 24 O -0.203 6.203 25 H 0.047 0.953 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.392 0.608 29 H 0.276 0.724 30 H 0.187 0.813 31 H 0.166 0.834 32 H 0.185 0.815 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 -7.593 -20.341 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.120 3.880 3 H 0.113 0.887 4 N -0.409 5.409 5 C 0.349 3.651 6 O -0.507 6.507 7 C -0.612 4.612 8 H 0.099 0.901 9 C -0.183 4.183 10 N -0.445 5.445 11 Si 0.816 3.184 12 H -0.186 1.186 13 H -0.194 1.194 14 H -0.177 1.177 15 C -0.016 4.016 16 C -0.214 4.214 17 C -0.114 4.114 18 C -0.094 4.094 19 C -0.116 4.116 20 C -0.134 4.134 21 C 0.061 3.939 22 F -0.126 7.126 23 C -0.066 4.066 24 O -0.106 6.106 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.225 0.775 29 H 0.086 0.914 30 H 0.205 0.795 31 H 0.184 0.816 32 H 0.202 0.798 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.082 -6.807 -19.988 21.217 hybrid contribution 0.050 -0.747 1.214 1.426 sum 2.132 -7.554 -18.774 20.349 Atomic orbital electron populations 1.22113 0.93590 1.02304 1.02683 1.19316 0.94740 0.94935 0.78973 0.88653 1.45995 1.72453 1.13406 1.09006 1.18494 0.77603 0.86079 0.82916 1.90550 1.56855 1.17934 1.85402 1.21398 1.47432 0.98140 0.94210 0.90090 1.26898 0.92743 0.95185 1.03469 1.70155 1.36063 1.10322 1.27963 0.85039 0.78942 0.79066 0.75389 1.18569 1.19366 1.17683 1.22678 1.01139 0.79846 0.97979 1.22573 1.05890 1.00857 0.92095 1.20084 1.03674 0.90556 0.97077 1.20835 0.96428 1.01059 0.91038 1.21149 0.99001 0.89562 1.01902 1.21417 0.98987 1.02758 0.90243 1.17051 1.07032 0.76762 0.93025 1.91478 1.92782 1.46375 1.82006 1.20128 1.04404 0.96305 0.85790 1.83959 1.69398 1.24605 1.32598 0.93364 0.89206 0.92417 0.77543 0.91362 0.79534 0.81617 0.79812 0.80497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 9.47 71.98 0.68 -4.65 16 2 C 0.23 8.99 3.01 44.25 0.13 9.12 16 3 H 0.10 4.05 7.55 -2.39 -0.02 4.03 16 4 N -0.75 -35.86 5.06 -450.39 -2.28 -38.14 16 5 C 0.54 31.92 7.71 86.36 0.67 32.59 16 6 O -0.62 -40.79 14.68 -4.30 -0.06 -40.85 16 7 C -0.58 -33.41 9.54 24.83 0.24 -33.18 16 8 H 0.08 4.33 7.85 -2.91 -0.02 4.30 16 9 C 0.03 1.84 5.50 85.30 0.47 2.31 16 10 N -0.82 -49.72 11.83 21.84 0.26 -49.46 16 11 Si 1.00 41.58 29.56 68.60 2.03 43.60 16 12 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 13 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 14 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 15 C 0.03 1.08 6.05 24.72 0.15 1.23 16 16 C -0.19 -5.47 10.99 23.54 0.26 -5.21 16 17 C -0.11 -2.92 6.40 -20.22 -0.13 -3.05 16 18 C -0.08 -1.26 10.05 22.21 0.22 -1.04 16 19 C -0.10 -1.24 9.98 22.03 0.22 -1.02 16 20 C -0.12 -1.91 9.99 22.34 0.22 -1.69 16 21 C 0.08 2.12 7.32 22.44 0.16 2.29 16 22 F -0.15 -4.32 17.27 44.97 0.78 -3.55 16 23 C -0.02 -0.57 7.40 23.01 0.17 -0.40 16 24 O -0.20 -7.37 10.19 -9.27 -0.09 -7.47 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.39 17.53 8.25 -92.71 -0.77 16.77 16 29 H 0.28 15.19 8.29 -92.70 -0.77 14.42 16 30 H 0.19 4.13 8.06 -2.91 -0.02 4.10 16 31 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.18 0.69 8.06 -2.91 -0.02 0.66 16 33 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -77.85 301.92 4.48 -73.36 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.39 Total: 25.19 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 3.47 Total: -2.69 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -2.02 Total: -87.60 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -0.16 Total: -48.32 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.78 Total: -3.55 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -77.85 4.48 -73.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334631180.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.799 kcal (2) G-P(sol) polarization free energy of solvation -77.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds