Wall clock time and date at job start Mon Mar 30 2020 01:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53496 * 114.20455 * 2 1 4 4 N 1.47070 * 87.97920 * 139.65888 * 3 2 1 5 5 C 1.34781 * 136.05340 * 152.84972 * 4 3 2 6 6 O 1.21550 * 119.99907 * 354.45390 * 5 4 3 7 7 C 1.47861 * 119.99995 * 174.45831 * 5 4 3 8 8 C 1.39675 * 120.10137 * 353.53833 * 7 5 4 9 9 C 1.38039 * 120.03764 * 180.27567 * 8 7 5 10 10 C 1.38169 * 120.24771 * 359.74602 * 9 8 7 11 11 C 1.39183 * 120.19839 * 0.02562 * 10 9 8 12 12 S 1.76209 * 120.01991 * 179.97438 * 11 10 9 13 13 C 1.76193 * 100.00229 * 265.72183 * 12 11 10 14 14 H 1.08003 * 119.99792 * 5.13905 * 13 12 11 15 15 C 1.38723 * 120.00312 * 185.14035 * 13 12 11 16 16 N 1.31627 * 119.99797 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00247 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47397 * 59.99636 * 17 15 13 19 19 H 1.48498 * 109.47360 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46853 * 299.99799 * 17 15 13 21 21 C 1.38872 * 119.96171 * 359.97381 * 11 10 9 22 22 C 1.47060 * 87.88772 * 333.09966 * 4 3 2 23 23 H 1.08994 * 109.47559 * 60.00021 * 1 2 3 24 24 H 1.09002 * 109.47172 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46645 * 299.99559 * 1 2 3 26 26 H 1.09003 * 113.40748 * 226.80038 * 2 1 3 27 27 H 1.08993 * 113.47014 * 24.88086 * 3 2 1 28 28 H 1.09004 * 113.46700 * 254.43215 * 3 2 1 29 29 H 1.08004 * 119.98269 * 359.97438 * 8 7 5 30 30 H 1.08007 * 119.87249 * 179.71880 * 9 8 7 31 31 H 1.08001 * 119.90409 * 179.97438 * 10 9 8 32 32 H 0.97001 * 119.99840 * 180.02562 * 16 15 13 33 33 H 1.07999 * 120.12079 * 179.97438 * 21 11 10 34 34 H 1.09003 * 113.46779 * 141.68137 * 22 4 3 35 35 H 1.09007 * 113.47076 * 272.12039 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1594 1.4000 0.0000 4 7 3.1599 0.8934 0.9514 5 6 4.4335 1.1953 1.2729 6 8 5.0411 2.0292 0.6303 7 6 5.0916 0.5121 2.4071 8 6 4.3574 -0.3453 3.2298 9 6 4.9718 -0.9780 4.2918 10 6 6.3146 -0.7711 4.5429 11 6 7.0568 0.0775 3.7268 12 16 8.7689 0.3385 4.0518 13 6 8.6749 1.7991 5.0328 14 1 7.7123 2.1960 5.3196 15 6 9.8374 2.4394 5.4367 16 7 11.0106 1.9555 5.0876 17 14 9.7378 3.9875 6.4773 18 1 9.0345 3.6844 7.7496 19 1 11.1092 4.4737 6.7740 20 1 8.9904 5.0349 5.7360 21 6 6.4474 0.7184 2.6561 22 6 2.1613 -0.0916 1.3933 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.9631 -0.6848 -0.7292 27 1 1.5101 2.1678 0.4206 28 1 2.5821 1.6859 -0.9632 29 1 3.3073 -0.5096 3.0379 30 1 4.4005 -1.6369 4.9289 31 1 6.7895 -1.2686 5.3756 32 1 11.8235 2.4030 5.3703 33 1 7.0208 1.3777 2.0214 34 1 2.5856 -1.0715 1.6124 35 1 1.5124 0.2748 2.1888 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336377020.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:55 Heat of formation + Delta-G solvation = 5.840874 kcal Electronic energy + Delta-G solvation = -18270.578297 eV Core-core repulsion = 15360.133011 eV Total energy + Delta-G solvation = -2910.445286 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.75525 -39.87068 -38.72515 -34.67969 -33.26132 -32.03003 -31.70110 -27.89946 -27.77221 -27.13733 -24.43620 -23.56571 -21.68247 -20.62425 -19.81399 -18.49046 -17.82516 -17.08266 -16.95409 -16.69884 -16.31259 -15.73158 -15.61606 -15.12180 -14.66519 -14.55167 -14.22546 -13.81015 -13.70987 -13.29488 -13.20089 -13.01572 -12.98031 -12.67965 -12.58929 -12.30369 -12.16300 -11.79076 -11.29340 -11.25397 -11.08080 -10.72669 -10.11644 -9.77140 -9.71322 -8.83598 -8.41620 -6.22235 -0.22770 0.20474 1.27073 1.37130 1.42782 1.58756 1.65443 1.81251 2.21849 2.74429 2.91294 3.23768 3.37488 3.40654 3.87309 3.93377 4.04362 4.12373 4.29165 4.38325 4.44179 4.47828 4.54128 4.58679 4.66011 4.80552 4.89914 5.03064 5.08632 5.22293 5.27292 5.30357 5.35335 5.46355 5.52482 5.83734 6.12892 6.55324 6.97212 6.98352 8.65433 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.028840 B = 0.003974 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.624033 B = 7043.403338 C = 7404.369572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.094 3.906 4 N -0.651 5.651 5 C 0.582 3.418 6 O -0.593 6.593 7 C -0.154 4.154 8 C -0.074 4.074 9 C -0.119 4.119 10 C -0.062 4.062 11 C -0.128 4.128 12 S -0.093 6.093 13 C -0.539 4.539 14 H 0.066 0.934 15 C 0.020 3.980 16 N -0.906 5.906 17 Si 0.992 3.008 18 H -0.259 1.259 19 H -0.269 1.269 20 H -0.272 1.272 21 C -0.048 4.048 22 C 0.088 3.912 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.176 0.824 30 H 0.180 0.820 31 H 0.138 0.862 32 H 0.275 0.725 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.226 -7.730 -5.080 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 C -0.027 4.027 4 N -0.384 5.384 5 C 0.374 3.626 6 O -0.475 6.475 7 C -0.159 4.159 8 C -0.092 4.092 9 C -0.139 4.139 10 C -0.083 4.083 11 C -0.239 4.239 12 S 0.142 5.858 13 C -0.687 4.687 14 H 0.084 0.916 15 C -0.185 4.185 16 N -0.542 5.542 17 Si 0.814 3.186 18 H -0.183 1.183 19 H -0.194 1.194 20 H -0.197 1.197 21 C -0.070 4.070 22 C -0.033 4.033 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.193 0.807 30 H 0.197 0.803 31 H 0.156 0.844 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -23.509 -7.824 -5.674 25.418 hybrid contribution 0.000 1.960 0.593 2.048 sum -23.509 -5.864 -5.081 24.757 Atomic orbital electron populations 1.21637 0.90820 1.03576 1.03188 1.22856 0.97845 0.95157 0.96777 1.23411 0.87288 0.99035 0.93008 1.49538 1.09539 1.38049 1.41319 1.18034 0.80628 0.81064 0.82897 1.90740 1.65054 1.36974 1.54701 1.19917 0.93944 1.03209 0.98859 1.22147 1.01409 0.92719 0.92949 1.21607 0.93534 1.00633 0.98081 1.22107 0.94822 0.94496 0.96833 1.22502 1.00982 1.01790 0.98614 1.83444 0.98770 1.35653 1.67940 1.23038 0.95623 1.12879 1.37119 0.91565 1.26018 0.93874 1.01294 0.97329 1.70101 0.98186 1.41157 1.44742 0.85096 0.78090 0.76966 0.78479 1.18335 1.19360 1.19712 1.21621 0.94047 0.95909 0.95430 1.23698 0.87402 0.93274 0.98903 0.91414 0.90531 0.91167 0.87758 0.87962 0.91860 0.80667 0.80313 0.84377 0.91611 0.88280 0.88239 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.58 9.79 71.98 0.70 0.13 16 2 C -0.11 -1.03 4.69 -10.55 -0.05 -1.08 16 3 C 0.09 1.61 8.20 83.18 0.68 2.29 16 4 N -0.65 -15.61 3.67 -862.26 -3.16 -18.78 16 5 C 0.58 21.01 8.01 86.79 0.69 21.71 16 6 O -0.59 -27.39 17.14 -3.87 -0.07 -27.45 16 7 C -0.15 -5.56 5.87 -20.11 -0.12 -5.68 16 8 C -0.07 -1.88 9.14 22.57 0.21 -1.67 16 9 C -0.12 -3.01 10.02 22.21 0.22 -2.79 16 10 C -0.06 -2.20 9.79 22.48 0.22 -1.98 16 11 C -0.13 -5.87 5.45 22.65 0.12 -5.75 16 12 S -0.09 -5.21 21.41 -56.49 -1.21 -6.42 16 13 C -0.54 -32.52 9.46 67.94 0.64 -31.87 16 14 H 0.07 3.95 7.79 -2.91 -0.02 3.93 16 15 C 0.02 1.18 5.49 84.84 0.47 1.65 16 16 N -0.91 -55.59 13.22 21.63 0.29 -55.31 16 17 Si 0.99 45.52 29.55 68.60 2.03 47.54 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 C -0.05 -2.18 9.34 22.70 0.21 -1.97 16 22 C 0.09 1.03 5.67 83.09 0.47 1.50 16 23 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 24 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 25 H 0.07 0.22 7.90 -2.38 -0.02 0.20 16 26 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.10 1.39 8.10 -2.39 -0.02 1.37 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.18 2.72 4.19 -2.91 -0.01 2.71 16 30 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 32 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 33 H 0.10 5.14 7.66 -2.91 -0.02 5.12 16 34 H 0.10 0.95 6.78 -2.39 -0.02 0.93 16 35 H 0.12 0.80 7.92 -2.38 -0.02 0.78 16 Total: -1.00 -82.59 314.59 3.45 -79.14 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 1.10 Total: 6.79 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 4.48 Total: -25.52 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -2.88 Total: -74.08 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.07 Total: -27.45 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -1.21 Total: -6.42 kcal Total: -82.59 3.45 -79.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336377020.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.981 kcal (2) G-P(sol) polarization free energy of solvation -82.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds