Wall clock time and date at job start Mon Mar 30 2020 01:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99560 * 2 1 4 4 H 1.48505 * 109.47215 * 269.99734 * 3 2 1 5 5 H 1.48502 * 109.47382 * 29.99579 * 3 2 1 6 6 H 1.48500 * 109.47244 * 150.00069 * 3 2 1 7 7 C 1.38943 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00289 * 0.02562 * 7 2 1 9 9 N 1.37105 * 119.99880 * 180.02562 * 7 2 1 10 10 C 1.34774 * 119.99490 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00542 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99673 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47073 * 179.97438 * 12 10 9 14 14 C 1.50704 * 109.47072 * 179.97438 * 13 12 10 15 15 N 1.30926 * 126.39686 * 89.99901 * 14 13 12 16 16 C 1.35404 * 105.57499 * 179.97438 * 15 14 13 17 17 C 1.47725 * 126.44857 * 179.97438 * 16 15 14 18 18 C 1.35991 * 125.93712 * 180.02562 * 17 16 15 19 19 C 1.40816 * 106.74029 * 179.74082 * 18 17 16 20 20 C 1.34816 * 107.04028 * 0.37215 * 19 18 17 21 21 O 1.34199 * 108.67861 * 359.62143 * 20 19 18 22 22 N 1.31043 * 107.09887 * 0.24668 * 16 15 14 23 23 O 1.21290 * 110.04511 * 359.57617 * 22 16 15 24 24 H 0.96999 * 120.00366 * 0.02562 * 1 2 3 25 25 H 0.96995 * 119.99576 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.47073 * 59.99930 * 12 10 9 27 27 H 1.09003 * 109.46843 * 299.99862 * 12 10 9 28 28 H 1.09006 * 109.46819 * 60.00239 * 13 12 10 29 29 H 1.08996 * 109.47407 * 300.00188 * 13 12 10 30 30 H 1.07997 * 126.62769 * 359.96721 * 18 17 16 31 31 H 1.07996 * 126.48398 * 180.26681 * 19 18 17 32 32 H 1.08002 * 125.66397 * 179.89332 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3800 -1.2031 0.0011 10 6 4.0538 -2.3703 0.0011 11 8 3.4475 -3.4208 0.0001 12 6 5.5609 -2.3703 0.0022 13 6 6.0709 -3.8127 0.0026 14 6 7.5780 -3.8127 0.0032 15 7 8.3545 -3.8125 1.0573 16 6 9.6203 -3.8131 0.5764 17 6 10.8627 -3.8126 1.3756 18 6 12.1296 -3.8127 0.8813 19 6 12.9976 -3.8060 1.9901 20 6 12.2261 -3.8105 3.0958 21 8 10.9376 -3.8112 2.7208 22 7 9.5356 -3.8082 -0.7313 23 8 8.3718 -3.8133 -1.0726 24 1 -0.4851 0.8400 -0.0004 25 1 3.8648 -0.3631 0.0014 26 1 5.9235 -1.8568 0.8927 27 1 5.9248 -1.8560 -0.8873 28 1 5.7083 -4.3265 -0.8877 29 1 5.7069 -4.3266 0.8923 30 1 12.4148 -3.8137 -0.1603 31 1 14.0771 -3.8002 1.9605 32 1 12.5854 -3.8090 4.1143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343031796.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:32 Heat of formation + Delta-G solvation = 51.027490 kcal Electronic energy + Delta-G solvation = -19779.189173 eV Core-core repulsion = 16324.410111 eV Total energy + Delta-G solvation = -3454.779062 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.73383 -42.93322 -38.60859 -36.17128 -34.74220 -33.97828 -33.40929 -31.80082 -31.29199 -29.78518 -26.39520 -24.81224 -24.12686 -22.72775 -21.82885 -20.74536 -19.45176 -18.60102 -18.50663 -18.05035 -17.12472 -16.40306 -16.16739 -15.57177 -15.11485 -14.98472 -14.27073 -13.68264 -13.40609 -13.28667 -13.07170 -12.96890 -12.84279 -12.46689 -12.32552 -12.04881 -12.03619 -11.31373 -11.26698 -10.97921 -10.63382 -10.52502 -10.29594 -10.03072 -9.65206 -8.79889 -8.67269 -8.26056 -6.37307 -3.89420 0.50993 1.23957 1.96655 2.14431 2.56558 2.62275 2.99869 3.04067 3.12853 3.33760 3.62426 3.99741 4.05491 4.45292 4.53371 4.59370 4.74657 5.00392 5.08678 5.22604 5.28597 5.36141 5.42115 5.52769 5.62393 5.72815 5.93316 5.98543 6.00621 6.07552 6.61387 7.48913 7.89587 8.06582 8.49719 8.86784 9.34784 9.70946 10.75301 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.030716 B = 0.003093 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.367101 B = 9050.820033 C = 9428.245492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.044 3.956 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.309 4.309 8 H 0.122 0.878 9 N -0.583 5.583 10 C 0.451 3.549 11 O -0.578 6.578 12 C -0.132 4.132 13 C -0.011 4.011 14 C 0.207 3.793 15 N -0.470 5.470 16 C 0.238 3.762 17 C 0.053 3.947 18 C -0.150 4.150 19 C -0.218 4.218 20 C -0.013 4.013 21 O -0.153 6.153 22 N -0.364 5.364 23 O 0.088 5.912 24 H 0.275 0.725 25 H 0.372 0.628 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.265 -4.208 2.431 24.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.139 0.861 9 N -0.221 5.221 10 C 0.237 3.763 11 O -0.462 6.462 12 C -0.174 4.174 13 C -0.050 4.050 14 C -0.013 4.013 15 N -0.203 5.203 16 C -0.031 4.031 17 C 0.001 3.999 18 C -0.172 4.172 19 C -0.237 4.237 20 C -0.083 4.083 21 O -0.046 6.046 22 N -0.071 5.071 23 O 0.026 5.974 24 H 0.085 0.915 25 H 0.205 0.795 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.133 0.867 29 H 0.140 0.860 30 H 0.176 0.824 31 H 0.176 0.824 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 24.153 -4.778 2.543 24.752 hybrid contribution 0.702 1.481 -0.024 1.639 sum 24.855 -3.297 2.520 25.199 Atomic orbital electron populations 1.69618 1.05682 1.27676 1.48679 1.25057 0.95508 0.98074 0.97376 0.86683 0.79852 0.83968 0.79001 1.19500 1.20078 1.19395 1.19458 0.79145 0.96732 1.48374 0.86086 1.42206 1.07647 1.06236 1.66012 1.19453 0.87730 0.84633 0.84482 1.90580 1.69700 1.30844 1.55067 1.21526 0.96050 0.95612 1.04211 1.20104 0.77531 0.99401 1.07975 1.29142 0.98928 0.93507 0.79705 1.72227 0.99085 1.20547 1.28420 1.22195 0.90511 1.03061 0.87309 1.18028 0.89959 1.11251 0.80630 1.21840 0.90282 1.03977 1.01129 1.21818 1.01263 1.09097 0.91511 1.24376 0.79540 1.03586 1.00755 1.84132 1.29006 1.70460 1.21047 1.74986 0.97821 1.21075 1.13231 1.85329 1.10866 1.65368 1.35819 0.91480 0.79459 0.89322 0.89394 0.86696 0.85997 0.82400 0.82434 0.77055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.07 13.96 55.50 0.77 -24.30 16 2 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 3 Si 0.88 18.91 27.74 -169.99 -4.71 14.20 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 7 C -0.31 -8.44 10.16 -14.93 -0.15 -8.60 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 9 N -0.58 -13.28 5.09 -10.96 -0.06 -13.33 16 10 C 0.45 9.44 7.78 -10.98 -0.09 9.36 16 11 O -0.58 -14.26 15.56 5.55 0.09 -14.18 16 12 C -0.13 -1.94 5.68 -27.88 -0.16 -2.10 16 13 C -0.01 -0.14 5.13 -27.88 -0.14 -0.29 16 14 C 0.21 2.78 7.74 -12.97 -0.10 2.68 16 15 N -0.47 -7.10 11.58 -9.87 -0.11 -7.21 16 16 C 0.24 3.45 8.06 -156.03 -1.26 2.19 16 17 C 0.05 0.68 7.26 -36.51 -0.26 0.42 16 18 C -0.15 -1.54 10.82 -39.41 -0.43 -1.96 16 19 C -0.22 -1.70 10.89 -39.82 -0.43 -2.13 16 20 C -0.01 -0.10 12.08 29.52 0.36 0.26 16 21 O -0.15 -1.84 10.67 4.82 0.05 -1.79 16 22 N -0.36 -5.12 12.18 30.99 0.38 -4.74 16 23 O 0.09 1.18 11.29 17.99 0.20 1.38 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.37 7.45 5.76 -40.82 -0.24 7.22 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.11 1.41 8.10 -51.93 -0.42 0.99 16 29 H 0.12 1.67 8.10 -51.93 -0.42 1.24 16 30 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.21 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 298.01 15.07 4.49 4.49 Total: -1.00 -33.12 298.01 -4.41 -37.53 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -2.75 Total: 7.06 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -2.76 Total: 0.90 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.98 Total: -49.58 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.34 Total: -14.59 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.20 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.12 -4.41 -37.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343031796.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.553 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds