Wall clock time and date at job start Mon Mar 30 2020 01:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99560 * 2 1 4 4 H 1.48505 * 109.47215 * 269.99734 * 3 2 1 5 5 H 1.48502 * 109.47382 * 29.99579 * 3 2 1 6 6 H 1.48500 * 109.47244 * 150.00069 * 3 2 1 7 7 C 1.38943 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00289 * 0.02562 * 7 2 1 9 9 N 1.37105 * 119.99880 * 180.02562 * 7 2 1 10 10 C 1.34774 * 119.99490 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00542 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99673 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47073 * 179.97438 * 12 10 9 14 14 C 1.50704 * 109.47072 * 179.97438 * 13 12 10 15 15 N 1.30926 * 126.39686 * 89.99901 * 14 13 12 16 16 C 1.35404 * 105.57499 * 179.97438 * 15 14 13 17 17 C 1.47725 * 126.44857 * 179.97438 * 16 15 14 18 18 C 1.35991 * 125.93712 * 180.02562 * 17 16 15 19 19 C 1.40816 * 106.74029 * 179.74082 * 18 17 16 20 20 C 1.34816 * 107.04028 * 0.37215 * 19 18 17 21 21 O 1.34199 * 108.67861 * 359.62143 * 20 19 18 22 22 N 1.31043 * 107.09887 * 0.24668 * 16 15 14 23 23 O 1.21290 * 110.04511 * 359.57617 * 22 16 15 24 24 H 0.96999 * 120.00366 * 0.02562 * 1 2 3 25 25 H 0.96995 * 119.99576 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.47073 * 59.99930 * 12 10 9 27 27 H 1.09003 * 109.46843 * 299.99862 * 12 10 9 28 28 H 1.09006 * 109.46819 * 60.00239 * 13 12 10 29 29 H 1.08996 * 109.47407 * 300.00188 * 13 12 10 30 30 H 1.07997 * 126.62769 * 359.96721 * 18 17 16 31 31 H 1.07996 * 126.48398 * 180.26681 * 19 18 17 32 32 H 1.08002 * 125.66397 * 179.89332 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3800 -1.2031 0.0011 10 6 4.0538 -2.3703 0.0011 11 8 3.4475 -3.4208 0.0001 12 6 5.5609 -2.3703 0.0022 13 6 6.0709 -3.8127 0.0026 14 6 7.5780 -3.8127 0.0032 15 7 8.3545 -3.8125 1.0573 16 6 9.6203 -3.8131 0.5764 17 6 10.8627 -3.8126 1.3756 18 6 12.1296 -3.8127 0.8813 19 6 12.9976 -3.8060 1.9901 20 6 12.2261 -3.8105 3.0958 21 8 10.9376 -3.8112 2.7208 22 7 9.5356 -3.8082 -0.7313 23 8 8.3718 -3.8133 -1.0726 24 1 -0.4851 0.8400 -0.0004 25 1 3.8648 -0.3631 0.0014 26 1 5.9235 -1.8568 0.8927 27 1 5.9248 -1.8560 -0.8873 28 1 5.7083 -4.3265 -0.8877 29 1 5.7069 -4.3266 0.8923 30 1 12.4148 -3.8137 -0.1603 31 1 14.0771 -3.8002 1.9605 32 1 12.5854 -3.8090 4.1143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343031796.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:32 Heat of formation + Delta-G solvation = 25.494728 kcal Electronic energy + Delta-G solvation = -19780.296356 eV Core-core repulsion = 16324.410111 eV Total energy + Delta-G solvation = -3455.886245 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.77200 -43.65575 -40.36069 -37.23445 -36.23084 -35.51325 -34.19086 -33.75004 -32.45066 -30.60419 -27.95922 -25.82419 -25.61223 -23.78760 -22.52880 -21.65422 -21.23271 -20.24514 -19.47608 -19.23486 -18.06152 -17.73724 -17.17712 -16.81103 -16.52908 -16.28553 -15.59598 -15.36794 -14.63886 -14.52291 -14.14847 -13.97315 -13.85025 -13.65047 -13.57050 -13.49548 -13.15769 -12.96627 -12.40100 -12.37164 -12.13944 -11.97804 -11.53474 -11.51166 -11.02601 -10.49181 -10.24701 -9.54292 -8.40435 -6.01375 -0.41338 0.27741 1.24971 1.32396 1.36446 1.38246 1.45375 1.56350 1.70410 1.93583 2.23783 2.38168 2.94998 3.16475 3.17136 3.65255 3.81117 3.88616 4.02138 4.08144 4.19446 4.41193 4.48445 4.60126 4.73516 4.83782 4.88068 4.93603 4.99631 5.39442 5.54752 5.91611 5.96496 6.56920 6.87411 6.87560 7.38933 7.92618 8.76716 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.030716 B = 0.003093 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.367101 B = 9050.820033 C = 9428.245492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.960 3.040 4 H -0.256 1.256 5 H -0.277 1.277 6 H -0.232 1.232 7 C -0.328 4.328 8 H 0.061 0.939 9 N -0.589 5.589 10 C 0.457 3.543 11 O -0.619 6.619 12 C -0.118 4.118 13 C -0.004 4.004 14 C 0.217 3.783 15 N -0.493 5.493 16 C 0.234 3.766 17 C 0.003 3.997 18 C -0.140 4.140 19 C -0.221 4.221 20 C 0.000 4.000 21 O -0.178 6.178 22 N -0.374 5.374 23 O 0.091 5.909 24 H 0.279 0.721 25 H 0.390 0.610 26 H 0.109 0.891 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.166 0.834 31 H 0.190 0.810 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.121 -2.718 2.911 28.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.212 4.212 3 Si 0.781 3.219 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.156 1.156 7 C -0.457 4.457 8 H 0.079 0.921 9 N -0.229 5.229 10 C 0.245 3.755 11 O -0.505 6.505 12 C -0.159 4.159 13 C -0.043 4.043 14 C -0.003 4.003 15 N -0.226 5.226 16 C -0.035 4.035 17 C -0.047 4.047 18 C -0.162 4.162 19 C -0.240 4.240 20 C -0.069 4.069 21 O -0.073 6.073 22 N -0.082 5.082 23 O 0.030 5.970 24 H 0.089 0.911 25 H 0.226 0.774 26 H 0.127 0.873 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.133 0.867 30 H 0.183 0.817 31 H 0.208 0.792 32 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 28.034 -3.304 3.008 28.388 hybrid contribution -0.407 0.844 -0.116 0.944 sum 27.627 -2.460 2.891 27.887 Atomic orbital electron populations 1.69795 1.08091 1.29241 1.50140 1.26077 0.96420 1.02627 0.96095 0.85425 0.79506 0.77048 0.79963 1.18085 1.20215 1.15580 1.19049 0.81415 0.95071 1.50213 0.92063 1.42056 1.05930 1.07751 1.67174 1.20594 0.90327 0.83337 0.81260 1.90570 1.71579 1.32446 1.55897 1.21454 0.90485 0.97159 1.06830 1.19995 0.77434 0.98642 1.08247 1.28946 0.98592 0.93126 0.79588 1.72218 0.99777 1.21449 1.29198 1.22558 0.90981 1.02383 0.87570 1.18177 0.90130 1.15197 0.81245 1.22170 0.89959 1.01817 1.02304 1.22224 1.02664 1.08696 0.90403 1.25370 0.78090 1.00653 1.02738 1.84114 1.31214 1.71135 1.20814 1.74956 0.97957 1.22007 1.13258 1.85309 1.10750 1.65383 1.35564 0.91144 0.77388 0.87296 0.85979 0.85788 0.86671 0.81658 0.79230 0.72883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.96 21.66 0.30 -54.93 16 2 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 3 Si 0.96 38.02 27.74 68.60 1.90 39.92 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 5 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 7 C -0.33 -18.59 10.16 84.04 0.85 -17.73 16 8 H 0.06 4.11 7.39 -2.91 -0.02 4.09 16 9 N -0.59 -26.41 5.09 -306.98 -1.56 -27.98 16 10 C 0.46 18.84 7.78 87.66 0.68 19.53 16 11 O -0.62 -31.29 15.56 -3.06 -0.05 -31.33 16 12 C -0.12 -3.17 5.68 29.85 0.17 -3.00 16 13 C 0.00 -0.10 5.13 29.85 0.15 0.05 16 14 C 0.22 5.54 7.74 88.35 0.68 6.23 16 15 N -0.49 -14.47 11.58 -302.24 -3.50 -17.97 16 16 C 0.23 6.61 8.06 136.95 1.10 7.71 16 17 C 0.00 0.09 7.26 24.26 0.18 0.26 16 18 C -0.14 -2.62 10.82 22.38 0.24 -2.38 16 19 C -0.22 -2.73 10.89 22.11 0.24 -2.49 16 20 C 0.00 0.01 12.08 67.03 0.81 0.81 16 21 O -0.18 -4.04 10.67 -5.67 -0.06 -4.10 16 22 N -0.37 -10.17 12.18 -58.76 -0.72 -10.89 16 23 O 0.09 2.31 11.29 74.43 0.84 3.15 16 24 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 25 H 0.39 14.54 5.76 -92.71 -0.53 14.01 16 26 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.12 2.88 8.10 -2.38 -0.02 2.86 16 29 H 0.12 3.08 8.10 -2.39 -0.02 3.06 16 30 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 31 H 0.19 1.01 8.06 -2.91 -0.02 0.98 16 32 H 0.26 0.58 8.06 -2.91 -0.02 0.55 16 Total: -1.00 -77.32 298.01 3.33 -73.99 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.59 Total: 21.38 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 5.58 Total: 8.75 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -5.48 Total: -111.77 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: 0.73 Total: -32.28 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 1.90 Total: 39.92 kcal Total: -77.32 3.33 -73.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343031796.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.489 kcal (2) G-P(sol) polarization free energy of solvation -77.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds