Wall clock time and date at job start Mon Mar 30 2020 01:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86797 * 119.99842 * 2 1 4 4 H 1.48499 * 109.47134 * 239.99889 * 3 2 1 5 5 H 1.48495 * 109.47318 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47150 * 120.00141 * 3 2 1 7 7 C 1.38954 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00309 * 198.21141 * 7 2 1 9 9 N 1.37097 * 119.99648 * 18.21208 * 7 2 1 10 10 C 1.34778 * 120.00307 * 44.28326 * 9 7 2 11 11 O 1.21294 * 120.00035 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99875 * 179.97438 * 10 9 7 13 13 S 1.81405 * 109.46584 * 180.02562 * 12 10 9 14 14 C 1.76209 * 102.99571 * 180.02562 * 13 12 10 15 15 C 1.38976 * 120.07664 * 179.97438 * 14 13 12 16 16 C 1.38080 * 119.91619 * 179.97438 * 15 14 13 17 17 C 1.38300 * 120.07976 * 359.97438 * 16 15 14 18 18 C 1.38299 * 120.16377 * 0.27151 * 17 16 15 19 19 C 1.38085 * 120.07686 * 359.49070 * 18 17 16 20 20 C 1.46502 * 119.99636 * 224.28607 * 9 7 2 21 21 C 1.52996 * 117.50092 * 3.22685 * 20 9 7 22 22 C 1.52998 * 117.49923 * 294.59856 * 20 9 7 23 23 H 0.96998 * 120.00620 * 354.92804 * 1 2 3 24 24 H 1.08998 * 109.46664 * 60.00989 * 12 10 9 25 25 H 1.08997 * 109.47654 * 299.99997 * 12 10 9 26 26 H 1.07998 * 120.04099 * 0.02562 * 15 14 13 27 27 H 1.07996 * 119.95785 * 180.02562 * 16 15 14 28 28 H 1.08000 * 119.91545 * 179.97438 * 17 16 15 29 29 H 1.08002 * 119.95986 * 179.72719 * 18 17 16 30 30 H 1.08005 * 120.04012 * 180.22853 * 19 18 17 31 31 H 1.09005 * 115.54900 * 148.93549 * 20 9 7 32 32 H 1.08998 * 117.49699 * 359.97438 * 21 20 9 33 33 H 1.08999 * 117.49850 * 145.02233 * 21 20 9 34 34 H 1.09001 * 117.49773 * 214.97619 * 22 20 9 35 35 H 1.08996 * 117.49971 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0483 -1.2266 0.2928 9 7 1.3749 -2.3611 -0.3700 10 6 0.5783 -2.3750 -1.4571 11 8 0.4226 -1.3633 -2.1079 12 6 -0.1181 -3.6478 -1.8647 13 16 -1.1078 -3.3449 -3.3545 14 6 -1.8350 -4.9179 -3.6736 15 6 -2.6818 -5.0857 -4.7628 16 6 -3.2494 -6.3199 -5.0101 17 6 -2.9758 -7.3884 -4.1757 18 6 -2.1377 -7.2239 -3.0880 19 6 -1.5626 -5.9938 -2.8373 20 6 1.5633 -3.5831 0.4157 21 6 2.4184 -3.4849 1.6806 22 6 2.9643 -4.1974 0.4415 23 1 -0.4851 0.8367 0.0743 24 1 -0.7697 -3.9801 -1.0566 25 1 0.6247 -4.4178 -2.0727 26 1 -2.8948 -4.2520 -5.4155 27 1 -3.9071 -6.4512 -5.8565 28 1 -3.4216 -8.3525 -4.3714 29 1 -1.9298 -8.0594 -2.4360 30 1 -0.9053 -5.8669 -1.9898 31 1 0.7139 -4.2660 0.4338 32 1 2.8411 -2.5111 1.9280 33 1 2.1316 -4.1032 2.5312 34 1 3.0366 -5.2845 0.4771 35 1 3.7457 -3.6927 -0.1265 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343296364.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:57 Heat of formation + Delta-G solvation = 34.676148 kcal Electronic energy + Delta-G solvation = -18662.695997 eV Core-core repulsion = 15753.501103 eV Total energy + Delta-G solvation = -2909.194895 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.78834 -38.63154 -36.14971 -32.92105 -31.42639 -30.92025 -30.83691 -28.97619 -24.76716 -22.66076 -22.46676 -21.79159 -21.28891 -19.55620 -17.78771 -16.39569 -16.12132 -16.05145 -15.02191 -14.86935 -14.60313 -14.33326 -14.03111 -13.88466 -13.39440 -13.07730 -12.90642 -12.66152 -12.12107 -11.81607 -11.32738 -11.15911 -11.04623 -10.95590 -10.88344 -10.64239 -10.25453 -10.04959 -9.85990 -9.67274 -9.58590 -8.93748 -8.78501 -8.20069 -7.14902 -7.00010 -6.17121 -3.94463 1.31328 1.42192 1.83045 2.86665 3.27846 3.35970 3.38934 3.78146 3.94880 4.21197 4.65676 4.74616 4.90351 4.96931 5.11440 5.17480 5.41959 5.45931 5.47899 5.57117 5.59285 5.69161 5.76116 5.81013 5.99185 6.02903 6.15156 6.35678 6.38408 6.42411 6.53010 6.65069 6.86054 6.96490 7.55575 8.18093 8.94759 9.02790 9.54893 10.13880 10.91674 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.004985 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.163986 B = 5615.047114 C = 6559.438543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.351 4.351 8 H 0.080 0.920 9 N -0.419 5.419 10 C 0.497 3.503 11 O -0.514 6.514 12 C -0.133 4.133 13 S -0.034 6.034 14 C -0.093 4.093 15 C -0.107 4.107 16 C -0.103 4.103 17 C -0.140 4.140 18 C -0.100 4.100 19 C -0.140 4.140 20 C 0.070 3.930 21 C -0.170 4.170 22 C -0.206 4.206 23 H 0.267 0.733 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 -13.467 -3.302 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.137 4.137 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.478 4.478 8 H 0.097 0.903 9 N -0.140 5.140 10 C 0.282 3.718 11 O -0.391 6.391 12 C -0.285 4.285 13 S 0.212 5.788 14 C -0.206 4.206 15 C -0.131 4.131 16 C -0.122 4.122 17 C -0.161 4.161 18 C -0.120 4.120 19 C -0.165 4.165 20 C -0.037 4.037 21 C -0.208 4.208 22 C -0.246 4.246 23 H 0.077 0.923 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.144 0.856 27 H 0.141 0.859 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.265 -11.612 -4.244 12.787 hybrid contribution 0.442 -0.642 0.985 1.257 sum -2.823 -12.254 -3.258 12.990 Atomic orbital electron populations 1.69803 1.06592 1.27843 1.42031 1.25266 0.94855 0.99507 0.94083 0.86231 0.79295 0.81720 0.78539 1.19826 1.21087 1.20315 1.18817 0.94602 0.83621 1.50762 0.90263 1.42596 1.43818 1.07044 1.20589 1.18867 0.83580 0.87229 0.82138 1.90577 1.62104 1.33619 1.52836 1.23957 1.01735 1.03864 0.98915 1.86269 1.54103 1.05994 1.32424 1.22427 1.00658 0.99110 0.98443 1.20740 0.97645 0.97848 0.96901 1.21039 0.99297 0.92639 0.99275 1.21071 1.00097 0.98822 0.96125 1.21033 0.96847 0.96773 0.97361 1.21247 1.02146 0.93000 1.00114 1.21735 0.92661 0.91531 0.97746 1.23064 1.04150 1.02573 0.90995 1.23328 0.99532 0.98565 1.03126 0.92295 0.88481 0.88424 0.85638 0.85941 0.86297 0.86114 0.85942 0.88165 0.87340 0.89703 0.89724 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.41 11.74 55.50 0.65 -23.76 16 2 C 0.07 2.07 4.38 -17.47 -0.08 1.99 16 3 Si 0.92 21.76 29.59 -169.99 -5.03 16.73 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.35 -9.42 7.92 -14.93 -0.12 -9.53 16 8 H 0.08 2.05 7.26 -52.49 -0.38 1.66 16 9 N -0.42 -10.28 2.83 -107.73 -0.31 -10.58 16 10 C 0.50 12.47 6.98 -10.98 -0.08 12.39 16 11 O -0.51 -15.05 13.63 5.55 0.08 -14.98 16 12 C -0.13 -2.58 3.44 36.01 0.12 -2.45 16 13 S -0.03 -0.66 21.06 -107.50 -2.26 -2.92 16 14 C -0.09 -1.46 6.11 -39.04 -0.24 -1.70 16 15 C -0.11 -1.48 9.79 -39.37 -0.39 -1.87 16 16 C -0.10 -1.19 10.04 -39.62 -0.40 -1.58 16 17 C -0.14 -1.54 10.04 -39.54 -0.40 -1.94 16 18 C -0.10 -1.19 10.04 -39.62 -0.40 -1.59 16 19 C -0.14 -1.98 9.36 -39.37 -0.37 -2.35 16 20 C 0.07 1.34 5.87 -67.93 -0.40 0.94 16 21 C -0.17 -2.96 9.80 -26.73 -0.26 -3.22 16 22 C -0.21 -3.38 10.36 -26.73 -0.28 -3.66 16 23 H 0.27 7.55 8.32 -40.82 -0.34 7.21 16 24 H 0.10 1.75 7.17 -51.93 -0.37 1.37 16 25 H 0.10 1.65 7.71 -51.93 -0.40 1.25 16 26 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 27 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.12 1.63 5.88 -52.48 -0.31 1.32 16 31 H 0.10 1.71 6.96 -51.93 -0.36 1.35 16 32 H 0.11 2.10 6.72 -51.93 -0.35 1.75 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 311.00 15.07 4.69 4.69 Total: -1.00 -32.30 311.00 -9.72 -42.03 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.27 Total: 3.37 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -3.27 Total: -14.57 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.35 Total: -34.34 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.08 Total: -14.98 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -2.26 Total: -2.92 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.30 -9.72 -42.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343296364.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.703 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds