Wall clock time and date at job start Mon Mar 30 2020 01:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86797 * 119.99842 * 2 1 4 4 H 1.48499 * 109.47134 * 239.99889 * 3 2 1 5 5 H 1.48495 * 109.47318 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47150 * 120.00141 * 3 2 1 7 7 C 1.38954 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00309 * 198.21141 * 7 2 1 9 9 N 1.37097 * 119.99648 * 18.21208 * 7 2 1 10 10 C 1.34778 * 120.00307 * 44.28326 * 9 7 2 11 11 O 1.21294 * 120.00035 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99875 * 179.97438 * 10 9 7 13 13 S 1.81405 * 109.46584 * 180.02562 * 12 10 9 14 14 C 1.76209 * 102.99571 * 180.02562 * 13 12 10 15 15 C 1.38976 * 120.07664 * 179.97438 * 14 13 12 16 16 C 1.38080 * 119.91619 * 179.97438 * 15 14 13 17 17 C 1.38300 * 120.07976 * 359.97438 * 16 15 14 18 18 C 1.38299 * 120.16377 * 0.27151 * 17 16 15 19 19 C 1.38085 * 120.07686 * 359.49070 * 18 17 16 20 20 C 1.46502 * 119.99636 * 224.28607 * 9 7 2 21 21 C 1.52996 * 117.50092 * 3.22685 * 20 9 7 22 22 C 1.52998 * 117.49923 * 294.59856 * 20 9 7 23 23 H 0.96998 * 120.00620 * 354.92804 * 1 2 3 24 24 H 1.08998 * 109.46664 * 60.00989 * 12 10 9 25 25 H 1.08997 * 109.47654 * 299.99997 * 12 10 9 26 26 H 1.07998 * 120.04099 * 0.02562 * 15 14 13 27 27 H 1.07996 * 119.95785 * 180.02562 * 16 15 14 28 28 H 1.08000 * 119.91545 * 179.97438 * 17 16 15 29 29 H 1.08002 * 119.95986 * 179.72719 * 18 17 16 30 30 H 1.08005 * 120.04012 * 180.22853 * 19 18 17 31 31 H 1.09005 * 115.54900 * 148.93549 * 20 9 7 32 32 H 1.08998 * 117.49699 * 359.97438 * 21 20 9 33 33 H 1.08999 * 117.49850 * 145.02233 * 21 20 9 34 34 H 1.09001 * 117.49773 * 214.97619 * 22 20 9 35 35 H 1.08996 * 117.49971 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0483 -1.2266 0.2928 9 7 1.3749 -2.3611 -0.3700 10 6 0.5783 -2.3750 -1.4571 11 8 0.4226 -1.3633 -2.1079 12 6 -0.1181 -3.6478 -1.8647 13 16 -1.1078 -3.3449 -3.3545 14 6 -1.8350 -4.9179 -3.6736 15 6 -2.6818 -5.0857 -4.7628 16 6 -3.2494 -6.3199 -5.0101 17 6 -2.9758 -7.3884 -4.1757 18 6 -2.1377 -7.2239 -3.0880 19 6 -1.5626 -5.9938 -2.8373 20 6 1.5633 -3.5831 0.4157 21 6 2.4184 -3.4849 1.6806 22 6 2.9643 -4.1974 0.4415 23 1 -0.4851 0.8367 0.0743 24 1 -0.7697 -3.9801 -1.0566 25 1 0.6247 -4.4178 -2.0727 26 1 -2.8948 -4.2520 -5.4155 27 1 -3.9071 -6.4512 -5.8565 28 1 -3.4216 -8.3525 -4.3714 29 1 -1.9298 -8.0594 -2.4360 30 1 -0.9053 -5.8669 -1.9898 31 1 0.7139 -4.2660 0.4338 32 1 2.8411 -2.5111 1.9280 33 1 2.1316 -4.1032 2.5312 34 1 3.0366 -5.2845 0.4771 35 1 3.7457 -3.6927 -0.1265 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343296364.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:56 Heat of formation + Delta-G solvation = 16.453723 kcal Electronic energy + Delta-G solvation = -18663.486181 eV Core-core repulsion = 15753.501103 eV Total energy + Delta-G solvation = -2909.985078 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.42712 -39.76241 -37.82000 -34.86200 -33.12152 -32.17450 -31.81163 -30.59386 -26.71539 -23.70621 -23.49792 -23.15396 -22.84078 -21.36500 -19.07436 -18.12306 -17.77359 -17.26646 -16.77302 -16.28580 -16.01837 -15.77278 -15.44875 -15.31064 -14.72382 -14.29748 -14.14659 -14.00649 -13.76936 -13.55088 -12.94518 -12.80941 -12.71610 -12.35380 -12.23931 -12.14001 -12.00200 -11.69580 -11.28454 -11.01965 -10.77028 -10.66450 -10.12136 -9.90037 -9.04919 -8.38975 -8.23995 -6.03741 0.31390 0.44172 0.45811 1.34971 1.44312 1.47531 1.53007 2.12909 2.33954 2.81935 2.98085 3.09511 3.30102 3.86030 3.95908 4.04088 4.07031 4.12282 4.23842 4.25545 4.29856 4.44763 4.56121 4.62238 4.83287 4.88651 5.00695 5.11282 5.25205 5.39219 5.44106 5.47992 5.49402 5.59506 6.04794 6.14776 6.95766 7.09204 7.59679 8.22692 8.84114 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.004985 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.163986 B = 5615.047114 C = 6559.438543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.023 3.977 3 Si 0.971 3.029 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.254 1.254 7 C -0.358 4.358 8 H 0.082 0.918 9 N -0.434 5.434 10 C 0.479 3.521 11 O -0.570 6.570 12 C -0.105 4.105 13 S -0.105 6.105 14 C -0.107 4.107 15 C -0.122 4.122 16 C -0.101 4.101 17 C -0.130 4.130 18 C -0.101 4.101 19 C -0.152 4.152 20 C 0.036 3.964 21 C -0.167 4.167 22 C -0.178 4.178 23 H 0.261 0.739 24 H 0.110 0.890 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.153 0.847 28 H 0.156 0.844 29 H 0.152 0.848 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 -17.062 -2.920 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.184 4.184 3 Si 0.795 3.205 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.178 1.178 7 C -0.486 4.486 8 H 0.100 0.900 9 N -0.154 5.154 10 C 0.266 3.734 11 O -0.451 6.451 12 C -0.257 4.257 13 S 0.139 5.861 14 C -0.220 4.220 15 C -0.146 4.146 16 C -0.121 4.121 17 C -0.150 4.150 18 C -0.121 4.121 19 C -0.176 4.176 20 C -0.068 4.068 21 C -0.204 4.204 22 C -0.216 4.216 23 H 0.070 0.930 24 H 0.128 0.872 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.171 0.829 28 H 0.173 0.827 29 H 0.169 0.831 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.100 0.900 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.264 -15.264 -3.823 16.070 hybrid contribution 0.432 0.270 0.814 0.961 sum -2.832 -14.994 -3.009 15.552 Atomic orbital electron populations 1.69920 1.08063 1.27900 1.44542 1.26075 0.95493 1.02703 0.94088 0.85365 0.78150 0.78060 0.78877 1.20764 1.21379 1.17770 1.19085 0.94922 0.84957 1.49590 0.90023 1.42829 1.43313 1.08159 1.21139 1.19726 0.83465 0.88449 0.81750 1.90531 1.63951 1.36038 1.54555 1.23601 1.01896 1.01137 0.99022 1.86415 1.55843 1.10608 1.33230 1.22253 1.02315 0.97122 1.00345 1.20947 0.97824 0.99208 0.96598 1.21420 0.98901 0.91556 1.00198 1.21575 0.98577 1.00034 0.94815 1.21425 0.96130 0.96536 0.97990 1.21436 1.02649 0.93480 1.00030 1.22087 0.95291 0.90426 0.99038 1.23121 1.03166 1.02224 0.91921 1.23343 0.96423 1.00628 1.01232 0.93015 0.87222 0.85960 0.85824 0.82886 0.82664 0.83075 0.85607 0.85669 0.89958 0.86303 0.85511 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -53.35 11.74 21.66 0.25 -53.10 16 2 C 0.02 1.33 4.38 84.93 0.37 1.70 16 3 Si 0.97 45.99 29.59 68.60 2.03 48.02 16 4 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.25 -10.88 7.11 99.48 0.71 -10.18 16 7 C -0.36 -19.65 7.92 84.04 0.67 -18.98 16 8 H 0.08 4.30 7.26 -2.91 -0.02 4.28 16 9 N -0.43 -21.57 2.83 -613.13 -1.74 -23.30 16 10 C 0.48 24.78 6.98 87.66 0.61 25.39 16 11 O -0.57 -35.08 13.63 -3.07 -0.04 -35.13 16 12 C -0.11 -4.12 3.44 71.24 0.24 -3.87 16 13 S -0.11 -4.20 21.06 -56.49 -1.19 -5.39 16 14 C -0.11 -3.34 6.11 22.62 0.14 -3.20 16 15 C -0.12 -3.27 9.79 22.41 0.22 -3.05 16 16 C -0.10 -2.01 10.04 22.25 0.22 -1.79 16 17 C -0.13 -2.27 10.04 22.30 0.22 -2.05 16 18 C -0.10 -2.01 10.04 22.25 0.22 -1.78 16 19 C -0.15 -3.98 9.36 22.41 0.21 -3.77 16 20 C 0.04 1.35 5.87 44.99 0.26 1.62 16 21 C -0.17 -5.45 9.80 30.60 0.30 -5.15 16 22 C -0.18 -5.32 10.36 30.60 0.32 -5.01 16 23 H 0.26 15.51 8.32 -92.71 -0.77 14.74 16 24 H 0.11 3.91 7.17 -2.39 -0.02 3.90 16 25 H 0.12 4.04 7.71 -2.39 -0.02 4.03 16 26 H 0.12 3.23 8.06 -2.91 -0.02 3.21 16 27 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 30 H 0.13 3.09 5.88 -2.91 -0.02 3.07 16 31 H 0.13 3.96 6.96 -2.38 -0.02 3.94 16 32 H 0.08 3.14 6.72 -2.39 -0.02 3.13 16 33 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -74.94 311.00 4.42 -70.52 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 1.09 Total: 18.30 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 4.01 Total: -19.93 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -1.48 Total: -76.40 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -0.04 Total: -35.13 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 16 Polarization: -4.20 SS G_CDS: -1.19 Total: -5.39 kcal Total: -74.94 4.42 -70.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343296364.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.975 kcal (2) G-P(sol) polarization free energy of solvation -74.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds