Wall clock time and date at job start Mon Mar 30 2020 02:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32605 * 120.00093 * 2 1 4 4 C 1.47761 * 119.99824 * 5.22756 * 3 2 1 5 5 C 1.39595 * 120.07034 * 314.64282 * 4 3 2 6 6 C 1.37820 * 119.92590 * 179.79247 * 5 4 3 7 7 C 1.39001 * 120.06806 * 0.46316 * 6 5 4 8 8 N 1.39804 * 119.92646 * 179.76437 * 7 6 5 9 9 C 1.34786 * 120.00218 * 207.33080 * 8 7 6 10 10 O 1.21293 * 119.99569 * 4.86099 * 9 8 7 11 11 C 1.50698 * 119.99900 * 184.86037 * 9 8 7 12 12 S 1.80996 * 109.46823 * 179.97438 * 11 9 8 13 13 C 1.76203 * 100.00243 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99232 * 0.02562 * 13 12 11 15 15 C 1.38788 * 120.00261 * 180.02562 * 13 12 11 16 16 N 1.31632 * 120.00443 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00209 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46624 * 59.99833 * 17 15 13 19 19 H 1.48497 * 109.47232 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47096 * 300.00309 * 17 15 13 21 21 C 1.39007 * 120.14831 * 359.79457 * 7 6 5 22 22 C 1.37814 * 120.06729 * 359.97410 * 21 7 6 23 23 H 1.08996 * 109.47205 * 304.86637 * 1 2 3 24 24 H 1.09003 * 109.46519 * 64.86520 * 1 2 3 25 25 H 1.09000 * 109.47138 * 184.85931 * 1 2 3 26 26 H 1.08005 * 119.99508 * 179.97438 * 2 1 3 27 27 H 1.07998 * 119.99866 * 185.23314 * 3 2 1 28 28 H 1.07998 * 120.03946 * 0.02672 * 5 4 3 29 29 H 1.08002 * 119.96426 * 180.23473 * 6 5 4 30 30 H 0.97001 * 120.00382 * 27.33115 * 8 7 6 31 31 H 1.08991 * 109.47664 * 300.00113 * 11 9 8 32 32 H 1.09005 * 109.46621 * 60.00484 * 11 9 8 33 33 H 0.96993 * 120.00639 * 180.02562 * 16 15 13 34 34 H 1.07994 * 119.96801 * 179.97438 * 21 7 6 35 35 H 1.07998 * 120.03767 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1701 1.1484 0.0000 4 6 1.4359 2.4254 0.1166 5 6 0.2869 2.6437 -0.6455 6 6 -0.3980 3.8341 -0.5313 7 6 0.0596 4.8206 0.3345 8 7 -0.6347 6.0290 0.4445 9 6 0.0194 7.1520 0.8018 10 8 1.2240 7.1336 0.9422 11 6 -0.7460 8.4305 1.0270 12 16 0.4041 9.7480 1.4931 13 6 -0.7261 11.0855 1.6897 14 1 -1.7818 10.9290 1.5241 15 6 -0.2597 12.3399 2.0573 16 7 1.0271 12.5308 2.2586 17 14 -1.4579 13.7577 2.2664 18 1 -2.4462 13.4188 3.3218 19 1 -0.7137 14.9809 2.6601 20 1 -2.1667 14.0000 0.9841 21 6 1.2065 4.6085 1.0909 22 6 1.8932 3.4184 0.9847 23 1 -0.3633 0.5875 0.8432 24 1 -0.3632 0.4365 -0.9304 25 1 -0.3633 -1.0240 0.0871 26 1 2.0470 -0.9354 0.0004 27 1 3.2467 1.1503 -0.0853 28 1 -0.0671 1.8791 -1.3211 29 1 -1.2892 4.0022 -1.1178 30 1 -1.5872 6.0594 0.2635 31 1 -1.2659 8.7090 0.1105 32 1 -1.4723 8.2831 1.8264 33 1 1.3530 13.4073 2.5158 34 1 1.5597 5.3770 1.7623 35 1 2.7840 3.2539 1.5729 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345805457.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:05 Heat of formation + Delta-G solvation = 7.632902 kcal Electronic energy + Delta-G solvation = -17711.532635 eV Core-core repulsion = 14801.165057 eV Total energy + Delta-G solvation = -2910.367578 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.37588 -38.61955 -35.73335 -33.87892 -32.47404 -31.06327 -30.28923 -28.58581 -26.83159 -25.52034 -22.97186 -22.49486 -20.35568 -19.34384 -18.08232 -17.42672 -16.57810 -15.96974 -15.46973 -14.90380 -14.84421 -14.51109 -14.34626 -13.94988 -13.70233 -13.37401 -13.04764 -12.83839 -12.58843 -12.53358 -12.10541 -11.91759 -11.36550 -11.10050 -11.06882 -11.01611 -10.81064 -10.32627 -9.88681 -9.46695 -9.34490 -9.10018 -8.89588 -8.32220 -7.75415 -6.56586 -6.25936 -3.97757 1.00665 1.44028 2.14756 2.88853 2.92046 3.21019 3.24442 3.27370 3.58400 3.87168 4.15645 4.67367 4.75177 4.87946 4.91274 5.01302 5.09354 5.09504 5.33952 5.46176 5.46603 5.54072 5.64863 5.68414 5.76636 5.82288 6.01105 6.03729 6.16555 6.35148 6.40934 6.50500 6.56745 6.70537 7.09042 7.49095 7.55172 8.30459 8.36471 9.19265 10.81437 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.063018 B = 0.002886 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.209424 B = 9699.738266 C =10033.718810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.156 4.156 3 C -0.117 4.117 4 C -0.087 4.087 5 C -0.096 4.096 6 C -0.157 4.157 7 C 0.162 3.838 8 N -0.679 5.679 9 C 0.531 3.469 10 O -0.494 6.494 11 C -0.154 4.154 12 S -0.056 6.056 13 C -0.538 4.538 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.867 5.867 17 Si 0.920 3.080 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.274 1.274 21 C -0.130 4.130 22 C -0.085 4.085 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.410 0.590 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.270 0.730 34 H 0.147 0.853 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.948 -21.973 -4.937 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.174 4.174 3 C -0.135 4.135 4 C -0.088 4.088 5 C -0.114 4.114 6 C -0.178 4.178 7 C 0.066 3.934 8 N -0.324 5.324 9 C 0.318 3.682 10 O -0.366 6.366 11 C -0.305 4.305 12 S 0.170 5.830 13 C -0.686 4.686 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.502 5.502 17 Si 0.746 3.254 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.150 4.150 22 C -0.104 4.104 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.130 0.870 27 H 0.135 0.865 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.245 0.755 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.164 0.836 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.821 -21.767 -4.618 22.326 hybrid contribution -2.571 0.992 -0.166 2.760 sum -4.392 -20.775 -4.784 21.767 Atomic orbital electron populations 1.21138 0.93364 1.01862 1.02450 1.23230 0.96320 0.97337 1.00510 1.21639 0.99003 0.91457 1.01416 1.18966 0.96185 0.94608 0.99079 1.21213 0.94645 0.96617 0.98903 1.20751 1.02517 0.94606 0.99947 1.17938 0.94215 0.85821 0.95396 1.43707 1.12559 1.06660 1.69442 1.20552 0.88176 0.84129 0.75329 1.90692 1.14057 1.84476 1.47380 1.23553 1.04644 0.97075 1.05226 1.85416 1.09083 0.99390 1.89100 1.22812 0.95093 0.95934 1.54726 0.90878 1.24995 0.95758 0.98240 0.94552 1.69999 1.12718 1.23852 1.43665 0.86208 0.80200 0.80224 0.78769 1.19904 1.20777 1.19904 1.21368 0.95650 0.97985 1.00002 1.21124 0.99359 0.92091 0.97815 0.91323 0.90930 0.92575 0.86959 0.86468 0.85156 0.85818 0.75498 0.88830 0.88719 0.92046 0.83569 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 8.45 36.01 0.30 -0.66 16 2 C -0.16 -1.25 10.31 -36.21 -0.37 -1.63 16 3 C -0.12 -1.10 9.75 -37.59 -0.37 -1.47 16 4 C -0.09 -1.00 5.24 -104.99 -0.55 -1.55 16 5 C -0.10 -1.01 8.06 -39.23 -0.32 -1.33 16 6 C -0.16 -1.78 9.93 -39.45 -0.39 -2.17 16 7 C 0.16 2.25 6.39 -83.65 -0.53 1.72 16 8 N -0.68 -9.36 5.35 -9.83 -0.05 -9.41 16 9 C 0.53 9.66 7.64 -10.98 -0.08 9.57 16 10 O -0.49 -10.77 13.13 5.55 0.07 -10.69 16 11 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16 12 S -0.06 -1.49 20.57 -107.50 -2.21 -3.71 16 13 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 14 H 0.07 1.92 7.80 -52.48 -0.41 1.52 16 15 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 16 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 17 Si 0.92 21.14 29.55 -169.99 -5.02 16.11 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 C -0.13 -1.96 8.68 -39.45 -0.34 -2.30 16 22 C -0.09 -1.09 9.77 -39.23 -0.38 -1.48 16 23 H 0.07 0.57 7.61 -51.93 -0.39 0.18 16 24 H 0.07 0.49 5.50 -51.93 -0.29 0.20 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.11 0.72 8.06 -52.48 -0.42 0.30 16 27 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 28 H 0.13 1.09 5.33 -52.49 -0.28 0.81 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 30 H 0.41 4.15 8.79 -40.82 -0.36 3.79 16 31 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 32 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 33 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 34 H 0.15 2.53 5.93 -52.49 -0.31 2.22 16 35 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 314.44 15.07 4.74 4.74 Total: -1.00 -33.10 314.44 -8.50 -41.60 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.13 Total: 3.31 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -2.62 Total: -16.82 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.68 Total: -34.55 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.10 -8.50 -41.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345805457.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.232 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds