Wall clock time and date at job start Mon Mar 30 2020 02:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32605 * 120.00093 * 2 1 4 4 C 1.47761 * 119.99824 * 5.22756 * 3 2 1 5 5 C 1.39595 * 120.07034 * 314.64282 * 4 3 2 6 6 C 1.37820 * 119.92590 * 179.79247 * 5 4 3 7 7 C 1.39001 * 120.06806 * 0.46316 * 6 5 4 8 8 N 1.39804 * 119.92646 * 179.76437 * 7 6 5 9 9 C 1.34786 * 120.00218 * 207.33080 * 8 7 6 10 10 O 1.21293 * 119.99569 * 4.86099 * 9 8 7 11 11 C 1.50698 * 119.99900 * 184.86037 * 9 8 7 12 12 S 1.80996 * 109.46823 * 179.97438 * 11 9 8 13 13 C 1.76203 * 100.00243 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99232 * 0.02562 * 13 12 11 15 15 C 1.38788 * 120.00261 * 180.02562 * 13 12 11 16 16 N 1.31632 * 120.00443 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00209 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46624 * 59.99833 * 17 15 13 19 19 H 1.48497 * 109.47232 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47096 * 300.00309 * 17 15 13 21 21 C 1.39007 * 120.14831 * 359.79457 * 7 6 5 22 22 C 1.37814 * 120.06729 * 359.97410 * 21 7 6 23 23 H 1.08996 * 109.47205 * 304.86637 * 1 2 3 24 24 H 1.09003 * 109.46519 * 64.86520 * 1 2 3 25 25 H 1.09000 * 109.47138 * 184.85931 * 1 2 3 26 26 H 1.08005 * 119.99508 * 179.97438 * 2 1 3 27 27 H 1.07998 * 119.99866 * 185.23314 * 3 2 1 28 28 H 1.07998 * 120.03946 * 0.02672 * 5 4 3 29 29 H 1.08002 * 119.96426 * 180.23473 * 6 5 4 30 30 H 0.97001 * 120.00382 * 27.33115 * 8 7 6 31 31 H 1.08991 * 109.47664 * 300.00113 * 11 9 8 32 32 H 1.09005 * 109.46621 * 60.00484 * 11 9 8 33 33 H 0.96993 * 120.00639 * 180.02562 * 16 15 13 34 34 H 1.07994 * 119.96801 * 179.97438 * 21 7 6 35 35 H 1.07998 * 120.03767 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1701 1.1484 0.0000 4 6 1.4359 2.4254 0.1166 5 6 0.2869 2.6437 -0.6455 6 6 -0.3980 3.8341 -0.5313 7 6 0.0596 4.8206 0.3345 8 7 -0.6347 6.0290 0.4445 9 6 0.0194 7.1520 0.8018 10 8 1.2240 7.1336 0.9422 11 6 -0.7460 8.4305 1.0270 12 16 0.4041 9.7480 1.4931 13 6 -0.7261 11.0855 1.6897 14 1 -1.7818 10.9290 1.5241 15 6 -0.2597 12.3399 2.0573 16 7 1.0271 12.5308 2.2586 17 14 -1.4579 13.7577 2.2664 18 1 -2.4462 13.4188 3.3218 19 1 -0.7137 14.9809 2.6601 20 1 -2.1667 14.0000 0.9841 21 6 1.2065 4.6085 1.0909 22 6 1.8932 3.4184 0.9847 23 1 -0.3633 0.5875 0.8432 24 1 -0.3632 0.4365 -0.9304 25 1 -0.3633 -1.0240 0.0871 26 1 2.0470 -0.9354 0.0004 27 1 3.2467 1.1503 -0.0853 28 1 -0.0671 1.8791 -1.3211 29 1 -1.2892 4.0022 -1.1178 30 1 -1.5872 6.0594 0.2635 31 1 -1.2659 8.7090 0.1105 32 1 -1.4723 8.2831 1.8264 33 1 1.3530 13.4073 2.5158 34 1 1.5597 5.3770 1.7623 35 1 2.7840 3.2539 1.5729 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345805457.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:05 Heat of formation + Delta-G solvation = -12.708165 kcal Electronic energy + Delta-G solvation = -17712.414690 eV Core-core repulsion = 14801.165057 eV Total energy + Delta-G solvation = -2911.249633 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.57770 -39.72328 -36.73775 -34.92377 -34.59631 -32.02259 -31.56596 -29.65142 -27.80397 -27.49713 -24.00889 -23.47206 -21.63892 -20.09979 -19.90117 -18.67729 -18.00511 -16.88879 -16.79800 -16.73021 -16.17754 -15.80724 -15.40498 -15.15518 -14.77871 -14.58820 -14.47424 -14.04706 -13.64439 -13.47549 -13.33525 -13.17847 -12.87205 -12.64820 -12.59309 -12.28515 -11.80067 -11.74692 -11.43553 -11.13766 -10.84536 -10.31431 -10.13263 -9.87421 -8.76093 -8.66471 -8.35811 -6.14584 0.06271 0.48015 1.22049 1.28723 1.43816 1.44505 1.54609 1.65661 2.13796 2.25879 2.89927 2.98581 3.26814 3.75768 3.93238 3.97976 4.04807 4.24681 4.28680 4.40807 4.45672 4.49865 4.58674 4.63592 4.86501 5.01542 5.10350 5.16995 5.33189 5.37589 5.40788 5.48758 5.57531 5.79123 5.92796 6.09003 6.18499 6.36662 7.05364 7.07029 8.73144 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.063018 B = 0.002886 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.209424 B = 9699.738266 C =10033.718810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C -0.144 4.144 4 C -0.080 4.080 5 C -0.095 4.095 6 C -0.143 4.143 7 C 0.134 3.866 8 N -0.655 5.655 9 C 0.532 3.468 10 O -0.539 6.539 11 C -0.128 4.128 12 S -0.148 6.148 13 C -0.547 4.547 14 H 0.085 0.915 15 C 0.013 3.987 16 N -0.912 5.912 17 Si 0.999 3.001 18 H -0.262 1.262 19 H -0.280 1.280 20 H -0.261 1.261 21 C -0.154 4.154 22 C -0.101 4.101 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.132 0.868 27 H 0.124 0.876 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.429 0.571 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.271 0.729 34 H 0.113 0.887 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.572 -23.985 -6.287 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.154 4.154 3 C -0.162 4.162 4 C -0.081 4.081 5 C -0.113 4.113 6 C -0.164 4.164 7 C 0.039 3.961 8 N -0.301 5.301 9 C 0.319 3.681 10 O -0.415 6.415 11 C -0.279 4.279 12 S 0.079 5.921 13 C -0.695 4.695 14 H 0.103 0.897 15 C -0.192 4.192 16 N -0.548 5.548 17 Si 0.820 3.180 18 H -0.186 1.186 19 H -0.205 1.205 20 H -0.186 1.186 21 C -0.174 4.174 22 C -0.119 4.119 23 H 0.076 0.924 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.150 0.850 27 H 0.142 0.858 28 H 0.178 0.822 29 H 0.174 0.826 30 H 0.268 0.732 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.488 -23.828 -5.983 24.974 hybrid contribution -1.755 1.337 0.214 2.217 sum -6.242 -22.491 -5.769 24.044 Atomic orbital electron populations 1.21215 0.92771 1.02904 1.02447 1.23534 0.96920 0.97539 0.97445 1.21675 0.99476 0.90995 1.04021 1.19253 0.96293 0.94797 0.97746 1.21609 0.94029 0.96963 0.98662 1.21075 1.03075 0.93599 0.98611 1.18097 0.94602 0.86355 0.97001 1.43310 1.13324 1.05479 1.68019 1.20322 0.87510 0.84842 0.75379 1.90694 1.15929 1.85162 1.49732 1.23362 1.02907 0.94893 1.06776 1.85613 1.13573 1.03047 1.89906 1.23174 0.95508 0.96299 1.54479 0.89677 1.26140 0.97689 1.01440 0.93924 1.70172 1.15109 1.24615 1.44920 0.84996 0.77585 0.76022 0.79348 1.18625 1.20497 1.18573 1.21240 0.97140 0.98238 1.00816 1.21240 0.99771 0.92103 0.98830 0.92388 0.89875 0.90957 0.84987 0.85830 0.82227 0.82593 0.73191 0.86514 0.86617 0.91971 0.86934 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.45 71.24 0.60 -0.92 16 2 C -0.14 -1.76 10.31 24.53 0.25 -1.51 16 3 C -0.14 -2.42 9.75 23.63 0.23 -2.19 16 4 C -0.08 -1.71 5.24 -20.10 -0.11 -1.82 16 5 C -0.09 -1.74 8.06 22.50 0.18 -1.56 16 6 C -0.14 -2.85 9.93 22.35 0.22 -2.63 16 7 C 0.13 3.65 6.39 38.24 0.24 3.90 16 8 N -0.65 -17.44 5.35 -303.38 -1.62 -19.06 16 9 C 0.53 19.62 7.64 87.65 0.67 20.29 16 10 O -0.54 -24.82 13.13 -3.07 -0.04 -24.86 16 11 C -0.13 -4.93 6.16 71.24 0.44 -4.50 16 12 S -0.15 -8.15 20.57 -56.49 -1.16 -9.31 16 13 C -0.55 -30.84 9.50 67.95 0.65 -30.19 16 14 H 0.09 4.41 7.80 -2.91 -0.02 4.39 16 15 C 0.01 0.73 5.49 84.85 0.47 1.19 16 16 N -0.91 -55.88 13.22 21.65 0.29 -55.59 16 17 Si 1.00 43.20 29.55 68.60 2.03 45.23 16 18 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 19 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 21 C -0.15 -4.86 8.68 22.35 0.19 -4.66 16 22 C -0.10 -2.66 9.77 22.50 0.22 -2.44 16 23 H 0.06 0.81 7.61 -2.39 -0.02 0.79 16 24 H 0.08 0.76 5.50 -2.39 -0.01 0.75 16 25 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.13 1.21 8.06 -2.91 -0.02 1.18 16 27 H 0.12 1.88 8.06 -2.91 -0.02 1.86 16 28 H 0.16 1.98 5.33 -2.91 -0.02 1.97 16 29 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.43 7.66 8.79 -92.71 -0.82 6.85 16 31 H 0.12 3.95 8.14 -2.40 -0.02 3.93 16 32 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 33 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 34 H 0.11 4.29 5.93 -2.91 -0.02 4.27 16 35 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -75.49 314.44 4.04 -71.45 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.30 Total: 19.17 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 4.26 Total: -27.03 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -1.34 Total: -74.65 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.04 Total: -24.86 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -75.49 4.04 -71.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345805457.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.739 kcal (2) G-P(sol) polarization free energy of solvation -75.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds