Wall clock time and date at job start Mon Mar 30 2020 02:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36906 * 120.00023 * 2 1 4 4 H 1.07995 * 120.00092 * 137.71962 * 3 2 1 5 5 C 1.39019 * 119.99701 * 317.71676 * 3 2 1 6 6 N 1.31386 * 119.99504 * 163.39923 * 5 3 2 7 7 Si 1.86801 * 120.00265 * 343.39832 * 5 3 2 8 8 H 1.48502 * 109.46941 * 93.76236 * 7 5 3 9 9 H 1.48502 * 109.47029 * 213.76163 * 7 5 3 10 10 H 1.48499 * 109.47166 * 333.76073 * 7 5 3 11 11 C 1.34778 * 119.99993 * 179.97438 * 2 1 3 12 12 O 1.21616 * 119.99839 * 4.80947 * 11 2 1 13 13 C 1.47513 * 120.00086 * 184.80953 * 11 2 1 14 14 C 1.39603 * 120.52120 * 145.27691 * 13 11 2 15 15 N 1.31687 * 120.94737 * 179.97438 * 14 13 11 16 16 C 1.32327 * 121.84190 * 0.02562 * 15 14 13 17 17 C 1.39859 * 120.55838 * 0.02562 * 16 15 14 18 18 C 1.38178 * 119.60738 * 359.94656 * 17 16 15 19 19 N 1.40130 * 119.51858 * 179.97438 * 17 16 15 20 20 C 1.35146 * 118.87010 * 15.57593 * 19 17 16 21 21 O 1.21296 * 120.19598 * 181.68419 * 20 19 17 22 22 C 1.50757 * 119.60711 * 1.66547 * 20 19 17 23 23 O 1.35770 * 120.37037 * 180.02562 * 16 15 14 24 24 H 1.08997 * 109.47292 * 264.62716 * 1 2 3 25 25 H 1.09000 * 109.47363 * 24.62878 * 1 2 3 26 26 H 1.09003 * 109.46854 * 144.62308 * 1 2 3 27 27 H 0.97002 * 119.99570 * 180.02562 * 6 5 3 28 28 H 1.08006 * 119.52680 * 0.24736 * 14 13 11 29 29 H 1.07997 * 120.95497 * 180.02562 * 18 17 16 30 30 H 0.97002 * 120.56318 * 195.54448 * 19 17 16 31 31 H 1.09003 * 109.43056 * 208.42613 * 22 20 19 32 32 H 1.08998 * 109.39063 * 88.54591 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.0188 1.3073 0.6292 5 6 1.7256 2.2329 -0.8100 6 7 2.1575 3.4533 -0.5854 7 14 0.5422 1.9051 -2.2177 8 1 -0.8509 2.1323 -1.7563 9 1 0.8466 2.8235 -3.3443 10 1 0.6903 0.4989 -2.6716 11 6 2.1389 -1.1672 0.0005 12 8 1.5340 -2.2186 -0.0873 13 6 3.6101 -1.1694 0.1076 14 6 4.2690 -2.1865 0.8007 15 7 5.5820 -2.1970 0.9011 16 6 6.3315 -1.2528 0.3555 17 6 5.7443 -0.2001 -0.3539 18 6 4.3698 -0.1485 -0.4854 19 7 6.5587 0.7884 -0.9224 20 6 7.8823 0.5481 -1.0525 21 8 8.6143 1.3985 -1.5131 22 6 8.4435 -0.7830 -0.6213 23 8 7.6831 -1.2934 0.4771 24 1 -0.3634 -0.0962 1.0231 25 1 -0.3634 0.9342 -0.4283 26 1 -0.3633 -0.8380 -0.5950 27 1 1.8614 4.1841 -1.1504 28 1 3.6939 -2.9785 1.2574 29 1 3.8935 0.6542 -1.0288 30 1 6.1789 1.6306 -1.2179 31 1 9.4820 -0.6567 -0.3152 32 1 8.3938 -1.4838 -1.4546 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356040537.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:37 Heat of formation + Delta-G solvation = -61.037986 kcal Electronic energy + Delta-G solvation = -21480.333431 eV Core-core repulsion = 18020.694846 eV Total energy + Delta-G solvation = -3459.638585 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.76418 -41.10747 -40.01806 -38.79969 -37.04528 -36.59198 -34.02775 -33.28386 -31.28363 -29.25703 -28.38669 -27.11805 -25.34511 -24.66186 -22.29718 -20.87505 -20.24835 -19.64488 -18.68403 -18.42880 -17.95032 -17.61835 -16.84673 -16.64656 -16.32374 -16.12964 -15.94341 -15.62760 -15.11982 -14.80701 -14.61819 -14.15782 -14.08007 -13.95584 -13.90398 -13.33237 -12.79692 -12.56676 -12.48759 -12.22577 -11.91908 -11.44846 -11.32147 -11.07057 -10.52175 -10.41370 -9.79123 -9.23113 -8.55801 -6.25324 -0.48129 -0.02715 1.01629 1.20671 1.34300 1.43598 1.51733 1.79201 1.86108 2.14114 2.46974 2.58838 2.77268 2.92095 3.35223 3.64779 3.86397 3.92897 3.96815 4.16411 4.26852 4.39264 4.52112 4.59902 4.80095 5.07016 5.14090 5.19330 5.34258 5.59158 5.91818 5.96785 6.13409 6.54779 6.71151 6.82998 7.24627 7.61378 8.54338 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.019480 B = 0.006886 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.033197 B = 4065.263863 C = 5203.395913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.468 5.468 3 C -0.350 4.350 4 H 0.090 0.910 5 C 0.038 3.962 6 N -0.886 5.886 7 Si 0.926 3.074 8 H -0.257 1.257 9 H -0.286 1.286 10 H -0.266 1.266 11 C 0.525 3.475 12 O -0.604 6.604 13 C -0.161 4.161 14 C 0.163 3.837 15 N -0.481 5.481 16 C 0.300 3.700 17 C 0.036 3.964 18 C -0.025 4.025 19 N -0.651 5.651 20 C 0.490 3.510 21 O -0.542 6.542 22 C 0.058 3.942 23 O -0.294 6.294 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.283 0.717 28 H 0.189 0.811 29 H 0.167 0.833 30 H 0.420 0.580 31 H 0.186 0.814 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.532 -6.044 -1.411 9.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.188 5.188 3 C -0.478 4.478 4 H 0.107 0.893 5 C -0.169 4.169 6 N -0.521 5.521 7 Si 0.751 3.249 8 H -0.182 1.182 9 H -0.212 1.212 10 H -0.190 1.190 11 C 0.315 3.685 12 O -0.490 6.490 13 C -0.167 4.167 14 C 0.005 3.995 15 N -0.200 5.200 16 C 0.117 3.883 17 C -0.063 4.063 18 C -0.052 4.052 19 N -0.298 5.298 20 C 0.278 3.722 21 O -0.419 6.419 22 C -0.019 4.019 23 O -0.203 6.203 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.205 0.795 29 H 0.184 0.816 30 H 0.260 0.740 31 H 0.203 0.797 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.302 -6.688 -1.111 9.964 hybrid contribution -1.420 1.729 -1.278 2.577 sum 5.882 -4.958 -2.389 8.055 Atomic orbital electron populations 1.21956 0.81138 1.01610 1.02675 1.43612 1.05459 1.05307 1.64427 1.18990 1.14419 0.88908 1.25442 0.89269 1.25839 0.98200 0.94299 0.98536 1.69761 1.44322 0.99784 1.38226 0.86139 0.80199 0.78776 0.79767 1.18218 1.21244 1.19037 1.18159 0.86923 0.83573 0.79881 1.90655 1.70268 1.32024 1.56091 1.20673 0.94428 0.97817 1.03780 1.22800 0.87421 0.96023 0.93211 1.66964 1.06684 1.23911 1.22395 1.19412 0.85119 0.89745 0.93990 1.18684 0.91756 0.92986 1.02841 1.22026 0.90158 0.97414 0.95639 1.43792 1.07829 1.18439 1.59762 1.22072 0.81255 0.91567 0.77265 1.90801 1.57856 1.47849 1.45420 1.23688 0.97444 0.89823 0.90994 1.86128 1.12446 1.80413 1.41348 0.91309 0.91860 0.91203 0.90703 0.79456 0.81607 0.73951 0.79681 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.66 8.95 127.77 1.14 3.80 16 2 N -0.47 -20.47 2.51 -662.56 -1.66 -22.13 16 3 C -0.35 -16.24 6.62 84.09 0.56 -15.69 16 4 H 0.09 4.43 6.54 -2.91 -0.02 4.41 16 5 C 0.04 1.76 5.31 84.95 0.45 2.21 16 6 N -0.89 -44.03 13.96 21.68 0.30 -43.72 16 7 Si 0.93 37.59 24.93 68.60 1.71 39.31 16 8 H -0.26 -9.80 6.70 99.48 0.67 -9.13 16 9 H -0.29 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 11 C 0.52 22.47 7.38 86.69 0.64 23.11 16 12 O -0.60 -27.53 16.47 -4.08 -0.07 -27.59 16 13 C -0.16 -6.07 5.49 -19.98 -0.11 -6.18 16 14 C 0.16 5.43 10.76 85.04 0.92 6.34 16 15 N -0.48 -15.69 10.37 -306.92 -3.18 -18.87 16 16 C 0.30 9.28 7.54 85.01 0.64 9.92 16 17 C 0.04 1.13 6.54 38.19 0.25 1.38 16 18 C -0.02 -0.89 7.78 22.78 0.18 -0.71 16 19 N -0.65 -18.84 5.48 -302.57 -1.66 -20.50 16 20 C 0.49 12.92 7.95 87.62 0.70 13.61 16 21 O -0.54 -17.16 17.95 -3.08 -0.06 -17.21 16 22 C 0.06 1.08 7.15 71.25 0.51 1.59 16 23 O -0.29 -7.63 10.50 -90.98 -0.96 -8.58 16 24 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.06 2.44 3.73 -2.39 -0.01 2.43 16 26 H 0.07 2.62 7.52 -2.39 -0.02 2.60 16 27 H 0.28 13.21 8.31 -92.71 -0.77 12.44 16 28 H 0.19 5.56 7.99 -2.91 -0.02 5.54 16 29 H 0.17 6.54 5.70 -2.91 -0.02 6.53 16 30 H 0.42 12.22 8.89 -92.71 -0.82 11.40 16 31 H 0.19 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -59.25 277.67 0.65 -58.60 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.34 Total: 21.31 kcal Atomic # 6 Polarization: 33.52 SS G_CDS: 5.87 Total: 39.39 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -6.20 Total: -105.22 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -1.08 Total: -53.39 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 1.71 Total: 39.31 kcal Total: -59.25 0.65 -58.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356040537.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.434 kcal (2) G-P(sol) polarization free energy of solvation -59.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds