Wall clock time and date at job start Mon Mar 30 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00359 * 2 1 4 4 O 1.20829 * 119.99535 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00412 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47574 * 179.97438 * 5 3 2 7 7 C 1.37097 * 120.00305 * 263.96658 * 6 5 3 8 8 H 1.08006 * 119.99734 * 197.54177 * 7 6 5 9 9 C 1.38943 * 119.99862 * 17.54636 * 7 6 5 10 10 N 1.31412 * 120.00127 * 20.79925 * 9 7 6 11 11 Si 1.86800 * 119.99965 * 200.80344 * 9 7 6 12 12 H 1.48504 * 109.47269 * 89.99764 * 11 9 7 13 13 H 1.48499 * 109.47246 * 210.00090 * 11 9 7 14 14 H 1.48504 * 109.46890 * 329.99740 * 11 9 7 15 15 C 1.34785 * 119.99705 * 83.96429 * 6 5 3 16 16 O 1.21297 * 119.99836 * 0.02562 * 15 6 5 17 17 C 1.50698 * 119.99884 * 180.02562 * 15 6 5 18 18 H 1.08997 * 115.56111 * 34.30182 * 17 15 6 19 19 C 1.53079 * 117.49154 * 180.02562 * 17 15 6 20 20 H 1.08995 * 117.52737 * 214.95351 * 19 17 15 21 21 C 1.52998 * 117.49581 * 359.97438 * 19 17 15 22 22 C 1.52998 * 59.98283 * 107.48562 * 19 17 15 23 23 F 1.39898 * 117.49934 * 107.50436 * 22 19 17 24 24 F 1.39899 * 117.49566 * 252.49560 * 22 19 17 25 25 H 1.09005 * 109.46569 * 59.99795 * 1 2 3 26 26 H 1.08990 * 109.47624 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47164 * 300.00409 * 1 2 3 28 28 H 1.09003 * 109.47016 * 59.99813 * 5 3 2 29 29 H 1.09000 * 109.47268 * 299.99815 * 5 3 2 30 30 H 0.97006 * 120.00029 * 180.02562 * 10 9 7 31 31 H 1.09001 * 109.47464 * 179.97438 * 21 19 17 32 32 H 1.09002 * 109.47137 * 299.99937 * 21 19 17 33 33 H 1.09006 * 109.47034 * 59.99540 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.2964 3.3009 -1.1811 8 1 4.8630 4.2204 -1.1734 9 6 3.8861 2.7477 -2.3878 10 7 2.8852 1.8966 -2.4140 11 14 4.7575 3.2138 -3.9731 12 1 5.8850 2.2773 -4.2120 13 1 3.8002 3.1353 -5.1056 14 1 5.2799 4.5994 -3.8618 15 6 4.0547 3.3614 1.1603 16 8 3.7768 2.8116 2.2052 17 6 4.4815 4.8067 1.1595 18 1 4.1683 5.3891 0.2930 19 6 4.5450 5.5255 2.5095 20 1 4.2736 6.5809 2.5316 21 6 4.1697 4.7217 3.7561 22 6 5.8369 5.1434 1.7844 23 9 6.5792 6.1752 1.2001 24 9 6.5854 4.0859 2.3123 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.9564 0.7805 -0.8892 29 1 3.9557 0.7809 0.8908 30 1 2.5991 1.5101 -3.2565 31 1 4.2603 5.3556 4.6382 32 1 3.1422 4.3692 3.6654 33 1 4.8397 3.8672 3.8528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359325457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:15 Heat of formation + Delta-G solvation = -171.431504 kcal Electronic energy + Delta-G solvation = -22862.645125 eV Core-core repulsion = 18947.530331 eV Total energy + Delta-G solvation = -3915.114794 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.096 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.24654 -46.91372 -39.60192 -38.65218 -36.16233 -35.04697 -34.57654 -31.71521 -29.05114 -27.93415 -26.38571 -24.98880 -22.90322 -20.96490 -20.11989 -19.24470 -17.63768 -17.17207 -16.65079 -16.21217 -15.89212 -15.51089 -15.39301 -15.20219 -14.49614 -14.21858 -13.60965 -13.52128 -13.33631 -13.13975 -12.81620 -12.52830 -12.49269 -12.19046 -11.94088 -11.63498 -11.53553 -11.36633 -11.30741 -10.86002 -10.70677 -10.49830 -10.03919 -9.86186 -9.65363 -9.43099 -9.09438 -8.57766 -8.06655 -6.61594 -4.10761 2.89323 3.13928 3.14813 3.17080 3.36867 3.58251 3.66590 3.98371 4.20299 4.29466 4.68172 4.87886 5.10742 5.14248 5.49897 5.66890 5.74605 5.88842 5.92802 5.97678 6.13683 6.18165 6.22062 6.35826 6.39084 6.55343 6.87173 7.23606 7.38035 7.49397 8.11535 8.85901 9.03822 9.21465 9.61811 10.45282 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.015108 B = 0.008575 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.835242 B = 3264.408895 C = 4709.951605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.485 3.515 4 O -0.498 6.498 5 C 0.157 3.843 6 N -0.417 5.417 7 C -0.340 4.340 8 H 0.105 0.895 9 C 0.041 3.959 10 N -0.864 5.864 11 Si 0.927 3.073 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.268 1.268 15 C 0.495 3.505 16 O -0.585 6.585 17 C -0.150 4.150 18 H 0.144 0.856 19 C -0.123 4.123 20 H 0.127 0.873 21 C -0.111 4.111 22 C 0.206 3.794 23 F -0.165 7.165 24 F -0.154 7.154 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.275 0.725 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.966 1.132 3.733 4.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.327 3.673 4 O -0.383 6.383 5 C 0.031 3.969 6 N -0.134 5.134 7 C -0.467 4.467 8 H 0.122 0.878 9 C -0.165 4.165 10 N -0.501 5.501 11 Si 0.753 3.247 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.192 1.192 15 C 0.283 3.717 16 O -0.470 6.470 17 C -0.171 4.171 18 H 0.162 0.838 19 C -0.143 4.143 20 H 0.145 0.855 21 C -0.167 4.167 22 C 0.168 3.832 23 F -0.146 7.146 24 F -0.135 7.135 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.528 1.032 4.065 4.227 hybrid contribution 0.245 0.396 -1.355 1.433 sum 0.773 1.428 2.710 3.159 Atomic orbital electron populations 1.22938 0.78603 1.01857 1.01668 1.86451 1.21753 1.35394 1.85684 1.23862 0.92172 0.80624 0.70690 1.90517 1.66454 1.36352 1.44963 1.20489 0.87410 0.85137 1.03834 1.43331 1.55976 1.08032 1.06068 1.19676 1.34299 1.10498 0.82216 0.87782 1.25253 0.94576 0.96900 0.99799 1.69840 1.21770 1.30231 1.28254 0.85918 0.79040 0.79377 0.80361 1.19968 1.20880 1.19214 1.18758 0.83052 0.85724 0.84123 1.90559 1.55554 1.69420 1.31503 1.23598 0.95573 0.98779 0.99197 0.83816 1.23700 0.93954 1.01494 0.95126 0.85543 1.21324 1.04293 0.98791 0.92321 1.20066 0.81151 0.80575 1.01381 1.92991 1.79342 1.57494 1.84767 1.92994 1.78483 1.55634 1.86375 0.92597 0.89563 0.93110 0.85854 0.89706 0.91481 0.93433 0.90103 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.82 16 2 O -0.38 -7.95 10.56 -39.25 -0.41 -8.37 16 3 C 0.49 11.80 6.12 36.00 0.22 12.02 16 4 O -0.50 -13.55 15.74 -18.75 -0.30 -13.85 16 5 C 0.16 3.69 5.14 -5.20 -0.03 3.66 16 6 N -0.42 -10.29 2.18 -116.10 -0.25 -10.54 16 7 C -0.34 -8.37 9.00 -14.94 -0.13 -8.50 16 8 H 0.10 2.44 6.43 -52.48 -0.34 2.11 16 9 C 0.04 0.98 4.88 -17.47 -0.09 0.90 16 10 N -0.86 -21.81 9.24 55.50 0.51 -21.29 16 11 Si 0.93 18.96 29.60 -169.99 -5.03 13.93 16 12 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 13 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 14 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 15 C 0.49 11.72 6.81 -10.98 -0.07 11.65 16 16 O -0.58 -14.43 12.79 5.54 0.07 -14.36 16 17 C -0.15 -2.99 4.96 -91.73 -0.45 -3.44 16 18 H 0.14 2.78 7.10 -51.93 -0.37 2.41 16 19 C -0.12 -2.05 6.39 -90.58 -0.58 -2.63 16 20 H 0.13 1.69 8.14 -51.93 -0.42 1.27 16 21 C -0.11 -1.84 8.40 37.16 0.31 -1.53 16 22 C 0.21 3.80 5.13 -26.73 -0.14 3.66 16 23 F -0.17 -2.92 17.60 2.25 0.04 -2.88 16 24 F -0.15 -3.08 16.03 2.25 0.04 -3.04 16 25 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 26 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 28 H 0.12 2.88 6.41 -51.93 -0.33 2.55 16 29 H 0.09 1.86 7.61 -51.93 -0.40 1.47 16 30 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.48 7.26 -51.93 -0.38 1.10 16 33 H 0.08 1.41 6.22 -51.93 -0.32 1.09 16 LS Contribution 292.49 15.07 4.41 4.41 Total: -1.00 -29.62 292.49 -4.20 -33.83 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -3.38 Total: 4.56 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: 0.11 Total: 17.60 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.26 Total: -31.83 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.64 Total: -36.57 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.08 Total: -5.92 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.62 -4.20 -33.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359325457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.604 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds