Wall clock time and date at job start Mon Mar 30 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00359 * 2 1 4 4 O 1.20829 * 119.99535 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00412 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47574 * 179.97438 * 5 3 2 7 7 C 1.37097 * 120.00305 * 263.96658 * 6 5 3 8 8 H 1.08006 * 119.99734 * 197.54177 * 7 6 5 9 9 C 1.38943 * 119.99862 * 17.54636 * 7 6 5 10 10 N 1.31412 * 120.00127 * 20.79925 * 9 7 6 11 11 Si 1.86800 * 119.99965 * 200.80344 * 9 7 6 12 12 H 1.48504 * 109.47269 * 89.99764 * 11 9 7 13 13 H 1.48499 * 109.47246 * 210.00090 * 11 9 7 14 14 H 1.48504 * 109.46890 * 329.99740 * 11 9 7 15 15 C 1.34785 * 119.99705 * 83.96429 * 6 5 3 16 16 O 1.21297 * 119.99836 * 0.02562 * 15 6 5 17 17 C 1.50698 * 119.99884 * 180.02562 * 15 6 5 18 18 H 1.08997 * 115.56111 * 34.30182 * 17 15 6 19 19 C 1.53079 * 117.49154 * 180.02562 * 17 15 6 20 20 H 1.08995 * 117.52737 * 214.95351 * 19 17 15 21 21 C 1.52998 * 117.49581 * 359.97438 * 19 17 15 22 22 C 1.52998 * 59.98283 * 107.48562 * 19 17 15 23 23 F 1.39898 * 117.49934 * 107.50436 * 22 19 17 24 24 F 1.39899 * 117.49566 * 252.49560 * 22 19 17 25 25 H 1.09005 * 109.46569 * 59.99795 * 1 2 3 26 26 H 1.08990 * 109.47624 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47164 * 300.00409 * 1 2 3 28 28 H 1.09003 * 109.47016 * 59.99813 * 5 3 2 29 29 H 1.09000 * 109.47268 * 299.99815 * 5 3 2 30 30 H 0.97006 * 120.00029 * 180.02562 * 10 9 7 31 31 H 1.09001 * 109.47464 * 179.97438 * 21 19 17 32 32 H 1.09002 * 109.47137 * 299.99937 * 21 19 17 33 33 H 1.09006 * 109.47034 * 59.99540 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.2964 3.3009 -1.1811 8 1 4.8630 4.2204 -1.1734 9 6 3.8861 2.7477 -2.3878 10 7 2.8852 1.8966 -2.4140 11 14 4.7575 3.2138 -3.9731 12 1 5.8850 2.2773 -4.2120 13 1 3.8002 3.1353 -5.1056 14 1 5.2799 4.5994 -3.8618 15 6 4.0547 3.3614 1.1603 16 8 3.7768 2.8116 2.2052 17 6 4.4815 4.8067 1.1595 18 1 4.1683 5.3891 0.2930 19 6 4.5450 5.5255 2.5095 20 1 4.2736 6.5809 2.5316 21 6 4.1697 4.7217 3.7561 22 6 5.8369 5.1434 1.7844 23 9 6.5792 6.1752 1.2001 24 9 6.5854 4.0859 2.3123 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.9564 0.7805 -0.8892 29 1 3.9557 0.7809 0.8908 30 1 2.5991 1.5101 -3.2565 31 1 4.2603 5.3556 4.6382 32 1 3.1422 4.3692 3.6654 33 1 4.8397 3.8672 3.8528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359325457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:15 Heat of formation + Delta-G solvation = -188.271727 kcal Electronic energy + Delta-G solvation = -22863.375372 eV Core-core repulsion = 18947.530331 eV Total energy + Delta-G solvation = -3915.845041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.096 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.71771 -48.38983 -41.41830 -40.40286 -37.80946 -36.81819 -36.37999 -33.57764 -30.74963 -29.39918 -27.94424 -26.80678 -24.53401 -22.44544 -21.83415 -21.03537 -19.16061 -18.86503 -18.49144 -17.94279 -17.40824 -17.28414 -17.00322 -16.85561 -16.21501 -15.97931 -15.10616 -15.05702 -14.94237 -14.63420 -14.41956 -14.23712 -14.09457 -13.70357 -13.54960 -13.24238 -13.10749 -12.93814 -12.84895 -12.58191 -12.49906 -12.10781 -11.59245 -11.56118 -11.46732 -10.98717 -10.89088 -10.34141 -9.93592 -8.44872 -6.00422 1.23236 1.47155 1.53409 1.58126 1.72943 1.91334 2.02082 2.28668 2.54233 2.63596 3.09683 3.23130 3.58202 3.63307 4.14823 4.24001 4.32959 4.35615 4.41258 4.49099 4.60750 4.65197 4.68972 4.74689 4.95526 5.01919 5.35782 5.49036 5.60921 5.68824 6.25286 7.00021 7.18678 7.38211 7.78520 8.61995 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.015108 B = 0.008575 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.835242 B = 3264.408895 C = 4709.951605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.488 3.512 4 O -0.535 6.535 5 C 0.154 3.846 6 N -0.432 5.432 7 C -0.358 4.358 8 H 0.111 0.889 9 C 0.002 3.998 10 N -0.890 5.890 11 Si 0.993 3.007 12 H -0.269 1.269 13 H -0.286 1.286 14 H -0.261 1.261 15 C 0.484 3.516 16 O -0.603 6.603 17 C -0.176 4.176 18 H 0.147 0.853 19 C -0.094 4.094 20 H 0.170 0.830 21 C -0.108 4.108 22 C 0.207 3.793 23 F -0.158 7.158 24 F -0.166 7.166 25 H 0.045 0.955 26 H 0.134 0.866 27 H 0.051 0.949 28 H 0.121 0.879 29 H 0.093 0.907 30 H 0.274 0.726 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 2.032 3.796 4.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.331 3.669 4 O -0.423 6.423 5 C 0.028 3.972 6 N -0.149 5.149 7 C -0.484 4.484 8 H 0.128 0.872 9 C -0.201 4.201 10 N -0.527 5.527 11 Si 0.816 3.184 12 H -0.194 1.194 13 H -0.212 1.212 14 H -0.185 1.185 15 C 0.274 3.726 16 O -0.490 6.490 17 C -0.198 4.198 18 H 0.165 0.835 19 C -0.113 4.113 20 H 0.188 0.812 21 C -0.165 4.165 22 C 0.170 3.830 23 F -0.139 7.139 24 F -0.147 7.147 25 H 0.064 0.936 26 H 0.152 0.848 27 H 0.070 0.930 28 H 0.139 0.861 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.842 1.916 4.138 4.637 hybrid contribution 0.083 0.045 -1.320 1.323 sum 0.925 1.961 2.818 3.556 Atomic orbital electron populations 1.23301 0.76070 1.04900 1.01252 1.86420 1.24201 1.33707 1.85014 1.23955 0.92442 0.80849 0.69673 1.90483 1.67261 1.37632 1.46875 1.20532 0.87397 0.85327 1.03943 1.43570 1.56364 1.08427 1.06562 1.19976 1.34723 1.11132 0.82586 0.87183 1.26068 0.94771 0.96780 1.02438 1.69934 1.22786 1.31226 1.28798 0.84928 0.77775 0.79372 0.76320 1.19390 1.21226 1.18485 1.19401 0.82415 0.87165 0.83613 1.90534 1.56198 1.70349 1.31936 1.23581 0.97616 0.96857 1.01747 0.83500 1.23963 0.91180 1.03200 0.92971 0.81245 1.21282 1.02338 0.98815 0.94057 1.20085 0.80980 0.80465 1.01513 1.93005 1.79179 1.56896 1.84798 1.92971 1.78783 1.56479 1.86456 0.93598 0.84784 0.92987 0.86136 0.88936 0.91566 0.89379 0.91991 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.27 10.56 113.37 1.20 2.46 16 2 O -0.38 -15.90 10.56 -51.39 -0.54 -16.45 16 3 C 0.49 24.09 6.12 71.23 0.44 24.53 16 4 O -0.53 -29.67 15.74 21.95 0.35 -29.32 16 5 C 0.15 7.38 5.14 85.63 0.44 7.82 16 6 N -0.43 -21.64 2.18 -639.59 -1.39 -23.03 16 7 C -0.36 -17.70 9.00 84.04 0.76 -16.94 16 8 H 0.11 5.16 6.43 -2.91 -0.02 5.14 16 9 C 0.00 0.12 4.88 84.92 0.41 0.53 16 10 N -0.89 -45.33 9.24 21.66 0.20 -45.13 16 11 Si 0.99 38.56 29.60 68.60 2.03 40.59 16 12 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 13 H -0.29 -11.20 7.11 99.48 0.71 -10.49 16 14 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 15 C 0.48 23.16 6.81 87.66 0.60 23.76 16 16 O -0.60 -30.22 12.79 -3.08 -0.04 -30.26 16 17 C -0.18 -6.90 4.96 -11.51 -0.06 -6.96 16 18 H 0.15 5.58 7.10 -2.39 -0.02 5.56 16 19 C -0.09 -2.89 6.39 -10.77 -0.07 -2.96 16 20 H 0.17 3.77 8.14 -2.39 -0.02 3.75 16 21 C -0.11 -3.41 8.40 71.98 0.60 -2.80 16 22 C 0.21 7.32 5.13 30.59 0.16 7.47 16 23 F -0.16 -5.24 17.60 44.97 0.79 -4.45 16 24 F -0.17 -6.53 16.03 44.97 0.72 -5.81 16 25 H 0.05 1.60 8.13 -2.38 -0.02 1.58 16 26 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 27 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 28 H 0.12 5.77 6.41 -2.39 -0.02 5.76 16 29 H 0.09 4.18 7.61 -2.39 -0.02 4.16 16 30 H 0.27 13.33 8.31 -92.70 -0.77 12.56 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.06 2.21 7.26 -2.39 -0.02 2.20 16 33 H 0.05 1.89 6.22 -2.38 -0.01 1.87 16 Total: -1.00 -64.28 292.49 7.74 -56.54 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 1.15 Total: 20.40 kcal Atomic # 6 Polarization: 32.44 SS G_CDS: 4.48 Total: 36.92 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -1.19 Total: -68.16 kcal Atomic # 8 Polarization: -75.79 SS G_CDS: -0.24 Total: -76.03 kcal Atomic # 9 Polarization: -11.76 SS G_CDS: 1.51 Total: -10.25 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -64.28 7.74 -56.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359325457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.734 kcal (2) G-P(sol) polarization free energy of solvation -64.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds