Wall clock time and date at job start Mon Mar 30 2020 02:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34229 * 116.99542 * 2 1 4 4 O 1.20826 * 120.00091 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99642 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46909 * 180.02562 * 5 3 2 7 7 C 1.37103 * 119.99488 * 263.96391 * 6 5 3 8 8 H 1.08002 * 119.99596 * 197.32062 * 7 6 5 9 9 C 1.38942 * 120.00233 * 17.31071 * 7 6 5 10 10 N 1.31408 * 120.00162 * 21.02295 * 9 7 6 11 11 Si 1.86799 * 120.00034 * 201.01349 * 9 7 6 12 12 H 1.48499 * 109.47072 * 90.00860 * 11 9 7 13 13 H 1.48501 * 109.47230 * 210.00190 * 11 9 7 14 14 H 1.48497 * 109.47504 * 330.00403 * 11 9 7 15 15 C 1.34770 * 120.00451 * 83.96241 * 6 5 3 16 16 O 1.21292 * 119.99888 * 359.97438 * 15 6 5 17 17 C 1.50693 * 120.00210 * 179.97438 * 15 6 5 18 18 H 1.08997 * 115.55480 * 325.67480 * 17 15 6 19 19 C 1.53004 * 117.50235 * 179.97438 * 17 15 6 20 20 H 1.08995 * 117.49910 * 144.99770 * 19 17 15 21 21 C 1.53007 * 117.49431 * 0.02562 * 19 17 15 22 22 C 1.52993 * 60.03406 * 252.50175 * 19 17 15 23 23 F 1.39901 * 117.50196 * 107.50321 * 22 19 17 24 24 F 1.39902 * 117.49705 * 252.52003 * 22 19 17 25 25 H 1.08997 * 109.47345 * 60.00191 * 1 2 3 26 26 H 1.09003 * 109.46786 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46989 * 299.99884 * 1 2 3 28 28 H 1.09001 * 109.47241 * 59.99721 * 5 3 2 29 29 H 1.09003 * 109.46604 * 299.99984 * 5 3 2 30 30 H 0.96996 * 120.00358 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.47349 * 60.08590 * 21 19 17 32 32 H 1.09002 * 109.47076 * 300.08189 * 21 19 17 33 33 H 1.09000 * 109.46507 * 180.08503 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.2952 3.3025 -1.1804 8 1 4.8587 4.2238 -1.1719 9 6 3.8883 2.7481 -2.3877 10 7 2.8877 1.8968 -2.4157 11 14 4.7634 3.2133 -3.9711 12 1 5.8917 2.2770 -4.2066 13 1 3.8090 3.1334 -5.1061 14 1 5.2851 4.5991 -3.8598 15 6 4.0555 3.3602 1.1612 16 8 3.7776 2.8094 2.2055 17 6 4.4832 4.8051 1.1619 18 1 5.2272 5.0756 0.4127 19 6 4.5466 5.5225 2.5119 20 1 5.3326 6.2647 2.6510 21 6 4.1714 4.7176 3.7579 22 6 3.4286 5.8546 1.5218 23 9 2.1409 5.3994 1.8249 24 9 3.4936 7.0876 0.8638 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.9558 0.7810 -0.8908 29 1 3.9564 0.7806 0.8892 30 1 2.6033 1.5100 -3.2586 31 1 4.8424 3.8641 3.8548 32 1 3.1444 4.3639 3.6663 33 1 4.2600 5.3515 4.6401 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359325460.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:25 Heat of formation + Delta-G solvation = -169.841394 kcal Electronic energy + Delta-G solvation = -23069.622711 eV Core-core repulsion = 19154.576870 eV Total energy + Delta-G solvation = -3915.045841 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.096 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.11894 -46.77913 -39.57624 -38.62651 -36.13331 -35.01460 -34.55965 -31.69916 -29.03510 -27.91109 -26.36159 -24.97368 -22.88616 -20.89406 -20.07574 -19.23504 -17.57746 -17.17843 -16.56925 -16.19977 -15.84831 -15.52332 -15.23357 -15.18550 -14.48007 -14.12304 -13.53315 -13.44426 -13.35731 -13.01258 -12.74739 -12.51580 -12.49499 -12.14019 -11.96485 -11.62052 -11.48466 -11.35642 -11.28559 -10.85052 -10.68425 -10.48614 -10.02243 -9.81959 -9.65545 -9.32158 -9.06008 -8.57838 -8.05087 -6.59076 -4.08866 2.93150 3.14053 3.15745 3.17272 3.41904 3.62435 3.69921 4.00639 4.25732 4.32707 4.69711 4.90748 5.13436 5.23315 5.48862 5.69991 5.77761 5.82178 5.94682 6.01024 6.14101 6.19451 6.25813 6.37168 6.37461 6.56224 6.88378 7.25291 7.40606 7.52435 8.11763 8.87556 9.08146 9.22835 9.62312 10.48059 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.009220 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.313130 B = 3036.022358 C = 4224.703737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.482 3.518 4 O -0.493 6.493 5 C 0.158 3.842 6 N -0.417 5.417 7 C -0.342 4.342 8 H 0.105 0.895 9 C 0.040 3.960 10 N -0.864 5.864 11 Si 0.927 3.073 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.268 1.268 15 C 0.495 3.505 16 O -0.585 6.585 17 C -0.153 4.153 18 H 0.141 0.859 19 C -0.127 4.127 20 H 0.126 0.874 21 C -0.110 4.110 22 C 0.215 3.785 23 F -0.149 7.149 24 F -0.166 7.166 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.274 0.726 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.676 0.663 3.991 4.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.323 3.677 4 O -0.377 6.377 5 C 0.032 3.968 6 N -0.134 5.134 7 C -0.469 4.469 8 H 0.123 0.877 9 C -0.165 4.165 10 N -0.501 5.501 11 Si 0.753 3.247 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.193 1.193 15 C 0.284 3.716 16 O -0.470 6.470 17 C -0.175 4.175 18 H 0.158 0.842 19 C -0.147 4.147 20 H 0.144 0.856 21 C -0.167 4.167 22 C 0.177 3.823 23 F -0.129 7.129 24 F -0.147 7.147 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.140 0.592 4.311 4.850 hybrid contribution -0.222 0.536 -1.425 1.539 sum 1.918 1.128 2.886 3.644 Atomic orbital electron populations 1.22933 0.78628 1.01796 1.01694 1.86446 1.21735 1.35432 1.85768 1.23869 0.92211 0.80670 0.70964 1.90553 1.66374 1.36261 1.44555 1.20482 0.87486 0.85074 1.03749 1.43338 1.55980 1.08123 1.05989 1.19669 1.34522 1.10453 0.82232 0.87727 1.25241 0.94651 0.96907 0.99749 1.69842 1.21825 1.30263 1.28173 0.85916 0.79020 0.79229 0.80488 1.20010 1.20892 1.19276 1.18753 0.82841 0.85889 0.84145 1.90558 1.55303 1.69571 1.31598 1.23514 1.00479 0.93783 0.99721 0.84178 1.23717 0.97279 1.00660 0.92995 0.85594 1.21324 1.04478 0.98539 0.92359 1.19938 0.79106 0.81941 1.01290 1.93037 1.38860 1.88119 1.92932 1.92984 1.96357 1.43271 1.82040 0.92610 0.89589 0.93120 0.85851 0.89760 0.91507 0.90160 0.90590 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.13 10.57 -39.26 -0.41 -8.54 16 3 C 0.48 11.97 6.13 36.01 0.22 12.19 16 4 O -0.49 -13.91 15.74 -18.75 -0.30 -14.21 16 5 C 0.16 3.71 5.14 -5.19 -0.03 3.68 16 6 N -0.42 -10.28 2.18 -116.10 -0.25 -10.53 16 7 C -0.34 -8.42 9.16 -14.93 -0.14 -8.55 16 8 H 0.11 2.42 6.04 -52.49 -0.32 2.10 16 9 C 0.04 0.98 4.88 -17.47 -0.09 0.90 16 10 N -0.86 -22.13 9.25 55.50 0.51 -21.62 16 11 Si 0.93 18.95 29.60 -169.99 -5.03 13.92 16 12 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 14 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 15 C 0.50 11.72 6.82 -10.99 -0.07 11.64 16 16 O -0.58 -14.41 12.79 5.55 0.07 -14.33 16 17 C -0.15 -3.06 5.22 -91.73 -0.48 -3.54 16 18 H 0.14 2.54 6.64 -51.93 -0.34 2.19 16 19 C -0.13 -2.11 6.39 -90.62 -0.58 -2.69 16 20 H 0.13 1.63 8.14 -51.93 -0.42 1.20 16 21 C -0.11 -1.83 8.40 37.16 0.31 -1.52 16 22 C 0.21 4.30 5.14 -26.69 -0.14 4.16 16 23 F -0.15 -3.44 16.04 2.25 0.04 -3.40 16 24 F -0.17 -3.17 17.60 2.25 0.04 -3.13 16 25 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 26 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 28 H 0.12 2.86 6.40 -51.93 -0.33 2.53 16 29 H 0.08 1.82 7.61 -51.93 -0.40 1.43 16 30 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.08 1.38 7.26 -51.93 -0.38 1.00 16 32 H 0.08 1.49 6.21 -51.93 -0.32 1.17 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 292.07 15.07 4.40 4.40 Total: -1.00 -30.75 292.07 -4.19 -34.94 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -3.34 Total: 4.40 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: 0.08 Total: 18.11 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.26 Total: -32.15 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -0.64 Total: -37.09 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.08 Total: -6.53 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.75 -4.19 -34.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359325460.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.905 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds