Wall clock time and date at job start Mon Mar 30 2020 02:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34229 * 116.99542 * 2 1 4 4 O 1.20826 * 120.00091 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99642 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46909 * 180.02562 * 5 3 2 7 7 C 1.37103 * 119.99488 * 263.96391 * 6 5 3 8 8 H 1.08002 * 119.99596 * 197.32062 * 7 6 5 9 9 C 1.38942 * 120.00233 * 17.31071 * 7 6 5 10 10 N 1.31408 * 120.00162 * 21.02295 * 9 7 6 11 11 Si 1.86799 * 120.00034 * 201.01349 * 9 7 6 12 12 H 1.48499 * 109.47072 * 90.00860 * 11 9 7 13 13 H 1.48501 * 109.47230 * 210.00190 * 11 9 7 14 14 H 1.48497 * 109.47504 * 330.00403 * 11 9 7 15 15 C 1.34770 * 120.00451 * 83.96241 * 6 5 3 16 16 O 1.21292 * 119.99888 * 359.97438 * 15 6 5 17 17 C 1.50693 * 120.00210 * 179.97438 * 15 6 5 18 18 H 1.08997 * 115.55480 * 325.67480 * 17 15 6 19 19 C 1.53004 * 117.50235 * 179.97438 * 17 15 6 20 20 H 1.08995 * 117.49910 * 144.99770 * 19 17 15 21 21 C 1.53007 * 117.49431 * 0.02562 * 19 17 15 22 22 C 1.52993 * 60.03406 * 252.50175 * 19 17 15 23 23 F 1.39901 * 117.50196 * 107.50321 * 22 19 17 24 24 F 1.39902 * 117.49705 * 252.52003 * 22 19 17 25 25 H 1.08997 * 109.47345 * 60.00191 * 1 2 3 26 26 H 1.09003 * 109.46786 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46989 * 299.99884 * 1 2 3 28 28 H 1.09001 * 109.47241 * 59.99721 * 5 3 2 29 29 H 1.09003 * 109.46604 * 299.99984 * 5 3 2 30 30 H 0.96996 * 120.00358 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.47349 * 60.08590 * 21 19 17 32 32 H 1.09002 * 109.47076 * 300.08189 * 21 19 17 33 33 H 1.09000 * 109.46507 * 180.08503 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.2952 3.3025 -1.1804 8 1 4.8587 4.2238 -1.1719 9 6 3.8883 2.7481 -2.3877 10 7 2.8877 1.8968 -2.4157 11 14 4.7634 3.2133 -3.9711 12 1 5.8917 2.2770 -4.2066 13 1 3.8090 3.1334 -5.1061 14 1 5.2851 4.5991 -3.8598 15 6 4.0555 3.3602 1.1612 16 8 3.7776 2.8094 2.2055 17 6 4.4832 4.8051 1.1619 18 1 5.2272 5.0756 0.4127 19 6 4.5466 5.5225 2.5119 20 1 5.3326 6.2647 2.6510 21 6 4.1714 4.7176 3.7579 22 6 3.4286 5.8546 1.5218 23 9 2.1409 5.3994 1.8249 24 9 3.4936 7.0876 0.8638 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.9558 0.7810 -0.8908 29 1 3.9564 0.7806 0.8892 30 1 2.6033 1.5100 -3.2586 31 1 4.8424 3.8641 3.8548 32 1 3.1444 4.3639 3.6663 33 1 4.2600 5.3515 4.6401 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359325460.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:25 Heat of formation + Delta-G solvation = -188.067512 kcal Electronic energy + Delta-G solvation = -23070.413055 eV Core-core repulsion = 19154.576870 eV Total energy + Delta-G solvation = -3915.836185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.096 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.69527 -48.38332 -41.41711 -40.40327 -37.79921 -36.82705 -36.37488 -33.56383 -30.74756 -29.38994 -27.95707 -26.79801 -24.54670 -22.43714 -21.81091 -21.02579 -19.16021 -18.91002 -18.43670 -17.95417 -17.49834 -17.23925 -16.97465 -16.88707 -16.18971 -15.86015 -15.16592 -15.04408 -14.96497 -14.62790 -14.41144 -14.24442 -14.13986 -13.65919 -13.54779 -13.23574 -13.09776 -12.92745 -12.87987 -12.56130 -12.46208 -12.09947 -11.60109 -11.56805 -11.47613 -10.96421 -10.84425 -10.34518 -9.92393 -8.42651 -5.98645 1.25124 1.48029 1.53841 1.59338 1.74006 1.94201 2.01794 2.30295 2.56857 2.67996 3.10262 3.25558 3.62271 3.65223 4.09585 4.23913 4.30086 4.33118 4.39428 4.50907 4.61493 4.64257 4.68226 4.75306 4.97380 5.02438 5.39002 5.50679 5.61621 5.69783 6.25472 7.01557 7.19417 7.39590 7.79095 8.64504 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.009220 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.313130 B = 3036.022358 C = 4224.703737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.376 6.376 3 C 0.484 3.516 4 O -0.536 6.536 5 C 0.155 3.845 6 N -0.432 5.432 7 C -0.359 4.359 8 H 0.117 0.883 9 C -0.002 4.002 10 N -0.894 5.894 11 Si 0.995 3.005 12 H -0.263 1.263 13 H -0.292 1.292 14 H -0.260 1.260 15 C 0.485 3.515 16 O -0.603 6.603 17 C -0.173 4.173 18 H 0.159 0.841 19 C -0.084 4.084 20 H 0.178 0.822 21 C -0.110 4.110 22 C 0.190 3.810 23 F -0.176 7.176 24 F -0.162 7.162 25 H 0.043 0.957 26 H 0.136 0.864 27 H 0.048 0.952 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.273 0.727 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.158 1.333 4.165 6.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.326 3.674 4 O -0.424 6.424 5 C 0.029 3.971 6 N -0.149 5.149 7 C -0.485 4.485 8 H 0.134 0.866 9 C -0.205 4.205 10 N -0.532 5.532 11 Si 0.819 3.181 12 H -0.188 1.188 13 H -0.219 1.219 14 H -0.184 1.184 15 C 0.274 3.726 16 O -0.490 6.490 17 C -0.194 4.194 18 H 0.176 0.824 19 C -0.103 4.103 20 H 0.195 0.805 21 C -0.166 4.166 22 C 0.153 3.847 23 F -0.156 7.156 24 F -0.142 7.142 25 H 0.062 0.938 26 H 0.154 0.846 27 H 0.067 0.933 28 H 0.141 0.859 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.634 1.245 4.499 5.916 hybrid contribution -0.775 0.262 -1.420 1.639 sum 2.859 1.508 3.079 4.464 Atomic orbital electron populations 1.23285 0.76253 1.04889 1.01063 1.86419 1.24045 1.33751 1.85070 1.24125 0.92739 0.80791 0.69706 1.90521 1.67365 1.37741 1.46780 1.20556 0.86986 0.85358 1.04165 1.43588 1.56312 1.08546 1.06485 1.20067 1.34803 1.11128 0.82526 0.86581 1.26126 0.94887 0.96825 1.02633 1.69953 1.23079 1.31524 1.28660 0.84886 0.77745 0.79450 0.76027 1.18823 1.21873 1.18359 1.19416 0.82153 0.87374 0.83638 1.90535 1.55881 1.70479 1.32059 1.23597 1.01152 0.91511 1.03167 0.82393 1.23988 0.95808 0.99577 0.90941 0.80473 1.21312 1.02011 0.99214 0.94104 1.20351 0.78570 0.82098 1.03723 1.92978 1.40864 1.88563 1.93216 1.92984 1.96246 1.42738 1.82270 0.93783 0.84599 0.93272 0.85920 0.88522 0.91731 0.90683 0.94223 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 10.56 113.37 1.20 2.54 16 2 O -0.38 -16.30 10.57 -51.41 -0.54 -16.84 16 3 C 0.48 24.51 6.13 71.24 0.44 24.95 16 4 O -0.54 -31.19 15.74 21.96 0.35 -30.84 16 5 C 0.15 7.41 5.14 85.64 0.44 7.85 16 6 N -0.43 -21.48 2.18 -639.61 -1.39 -22.88 16 7 C -0.36 -17.62 9.16 84.04 0.77 -16.85 16 8 H 0.12 5.26 6.04 -2.91 -0.02 5.24 16 9 C 0.00 -0.11 4.88 84.93 0.41 0.30 16 10 N -0.89 -46.41 9.25 21.66 0.20 -46.21 16 11 Si 1.00 38.41 29.60 68.60 2.03 40.44 16 12 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 13 H -0.29 -11.63 7.11 99.48 0.71 -10.93 16 14 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 15 C 0.48 22.98 6.82 87.66 0.60 23.58 16 16 O -0.60 -30.02 12.79 -3.07 -0.04 -30.06 16 17 C -0.17 -6.67 5.22 -11.51 -0.06 -6.73 16 18 H 0.16 5.41 6.64 -2.39 -0.02 5.39 16 19 C -0.08 -2.55 6.39 -10.79 -0.07 -2.62 16 20 H 0.18 3.59 8.14 -2.39 -0.02 3.57 16 21 C -0.11 -3.42 8.40 71.98 0.60 -2.81 16 22 C 0.19 7.39 5.14 30.62 0.16 7.55 16 23 F -0.18 -8.24 16.04 44.97 0.72 -7.52 16 24 F -0.16 -5.93 17.60 44.97 0.79 -5.14 16 25 H 0.04 1.62 8.13 -2.39 -0.02 1.60 16 26 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 27 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 28 H 0.12 5.81 6.40 -2.39 -0.02 5.79 16 29 H 0.10 4.25 7.61 -2.39 -0.02 4.24 16 30 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.07 2.45 7.26 -2.39 -0.02 2.43 16 32 H 0.04 1.53 6.21 -2.39 -0.01 1.52 16 33 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -68.21 292.07 7.76 -60.45 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 1.15 Total: 20.83 kcal Atomic # 6 Polarization: 33.28 SS G_CDS: 4.49 Total: 37.77 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -1.19 Total: -69.09 kcal Atomic # 8 Polarization: -77.50 SS G_CDS: -0.24 Total: -77.74 kcal Atomic # 9 Polarization: -14.17 SS G_CDS: 1.51 Total: -12.66 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -68.21 7.76 -60.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359325460.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.614 kcal (2) G-P(sol) polarization free energy of solvation -68.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds