Wall clock time and date at job start Mon Mar 30 2020 01:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48501 * 109.47295 * 269.99551 * 3 2 1 5 5 H 1.48505 * 109.47129 * 29.99704 * 3 2 1 6 6 H 1.48504 * 109.47322 * 149.99801 * 3 2 1 7 7 C 1.37881 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99334 * 0.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 180.02562 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.46923 * 120.62553 * 269.71992 * 12 9 7 14 14 C 1.52760 * 109.00861 * 233.58205 * 13 12 9 15 15 C 1.53046 * 109.38256 * 305.58983 * 14 13 12 16 16 N 1.46497 * 109.44518 * 181.25102 * 15 14 13 17 17 C 1.34784 * 120.00039 * 84.94761 * 16 15 14 18 18 N 1.34769 * 120.00045 * 179.97438 * 17 16 15 19 19 O 1.21583 * 119.99598 * 359.97438 * 17 16 15 20 20 C 1.53042 * 109.53591 * 61.23964 * 15 14 13 21 21 C 1.46921 * 120.63289 * 89.99915 * 12 9 7 22 22 H 0.96999 * 119.99997 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.59343 * 353.42265 * 13 12 9 24 24 H 1.09010 * 109.58634 * 113.84364 * 13 12 9 25 25 H 1.09006 * 109.56563 * 185.55777 * 14 13 12 26 26 H 1.09001 * 109.35973 * 65.50306 * 14 13 12 27 27 H 1.08998 * 109.46354 * 301.21868 * 15 14 13 28 28 H 0.97002 * 120.00183 * 264.93575 * 16 15 14 29 29 H 0.97002 * 120.00177 * 359.97438 * 18 17 16 30 30 H 0.97001 * 120.00450 * 179.97438 * 18 17 16 31 31 H 1.08998 * 109.49686 * 178.67995 * 20 15 14 32 32 H 1.09001 * 109.49965 * 58.58641 * 20 15 14 33 33 H 1.08997 * 109.58689 * 246.15965 * 21 12 9 34 34 H 1.08998 * 109.58450 * 6.44081 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 16 3.7665 -1.1940 0.0012 10 8 4.1683 -0.6498 -1.2485 11 8 4.1672 -0.6494 1.2510 12 7 4.2567 -2.7759 0.0011 13 6 4.4837 -3.4892 1.2653 14 6 5.8872 -4.0921 1.2513 15 6 6.0554 -4.9587 0.0012 16 7 7.3906 -5.5615 0.0016 17 6 7.6114 -6.7100 0.6715 18 7 8.8396 -7.2648 0.6714 19 8 6.7024 -7.2456 1.2758 20 6 5.8877 -4.0918 -1.2489 21 6 4.4788 -3.4907 -1.2632 22 1 -0.4850 0.8400 -0.0004 23 1 4.3949 -2.7928 2.0990 24 1 3.7477 -4.2863 1.3724 25 1 6.0299 -4.7055 2.1411 26 1 6.6250 -3.2898 1.2399 27 1 5.3016 -5.7460 0.0009 28 1 8.1159 -5.1341 -0.4804 29 1 9.5647 -6.8377 0.1890 30 1 8.9986 -8.0912 1.1538 31 1 6.0308 -4.7049 -2.1386 32 1 6.6255 -3.2895 -1.2369 33 1 3.7425 -4.2877 -1.3666 34 1 4.3843 -2.7955 -2.0974 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396794926.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:10 Heat of formation + Delta-G solvation = -114.082454 kcal Electronic energy + Delta-G solvation = -20352.083206 eV Core-core repulsion = 17025.588391 eV Total energy + Delta-G solvation = -3326.494815 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.11539 -37.99853 -35.72405 -34.49332 -34.41697 -33.69043 -33.01202 -30.85834 -30.15483 -26.37787 -24.01734 -23.14828 -21.12740 -20.43702 -18.84565 -18.30182 -17.68593 -17.08686 -16.73545 -15.42720 -15.26977 -15.10431 -14.93718 -14.31424 -14.17559 -13.80429 -13.55555 -13.30521 -13.09846 -12.74549 -12.16180 -12.06520 -11.42574 -11.28159 -11.05539 -10.94536 -10.78172 -10.59883 -10.48228 -10.36648 -10.28602 -9.86510 -9.79294 -9.20573 -9.13608 -9.03636 -8.30193 -6.79427 -5.32996 1.99741 2.79032 3.07101 3.12149 3.17262 3.26326 3.95246 4.13556 4.33177 4.59420 4.79342 4.96309 5.19144 5.32788 5.43834 5.51221 5.59161 5.75021 5.87259 5.89593 6.01110 6.14701 6.18245 6.28363 6.39540 6.45797 6.62138 6.65735 6.75589 7.35701 7.49563 7.83725 8.23801 8.51582 8.71676 10.33147 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.046120 B = 0.004740 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.967297 B = 5906.091491 C = 5973.053925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.152 3.848 3 Si 0.801 3.199 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.220 1.220 7 C -1.016 5.016 8 H 0.122 0.878 9 S 2.676 3.324 10 O -1.010 7.010 11 O -1.006 7.006 12 N -1.003 6.003 13 C 0.126 3.874 14 C -0.142 4.142 15 C 0.163 3.837 16 N -0.740 5.740 17 C 0.704 3.296 18 N -0.872 5.872 19 O -0.593 6.593 20 C -0.139 4.139 21 C 0.127 3.873 22 H 0.280 0.720 23 H 0.097 0.903 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.395 0.605 29 H 0.395 0.605 30 H 0.413 0.587 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.365 -10.409 -1.783 18.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.067 4.067 3 Si 0.621 3.379 4 H -0.170 1.170 5 H -0.179 1.179 6 H -0.142 1.142 7 C -1.151 5.151 8 H 0.140 0.860 9 S 2.780 3.220 10 O -1.000 7.000 11 O -0.996 6.996 12 N -0.838 5.838 13 C -0.001 4.001 14 C -0.182 4.182 15 C 0.058 3.942 16 N -0.395 5.395 17 C 0.402 3.598 18 N -0.440 5.440 19 O -0.471 6.471 20 C -0.178 4.178 21 C 0.000 4.000 22 H 0.091 0.909 23 H 0.116 0.884 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.228 0.772 29 H 0.223 0.777 30 H 0.244 0.756 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.873 -9.923 -1.313 17.928 hybrid contribution 0.361 0.456 -0.263 0.638 sum 15.234 -9.467 -1.576 18.005 Atomic orbital electron populations 1.69989 1.06600 1.29014 1.39638 1.24443 0.94782 0.98798 0.88662 0.87877 0.83624 0.84593 0.81814 1.17014 1.17876 1.14182 1.30560 1.15763 1.02171 1.66591 0.86047 1.01389 0.77225 0.70248 0.73177 1.93387 1.85344 1.75848 1.45414 1.93448 1.85346 1.75662 1.45186 1.57704 1.84289 1.31657 1.10195 1.21172 0.95247 0.97224 0.86430 1.22233 0.98390 0.99274 0.98301 1.20870 0.83020 0.95077 0.95202 1.45298 1.13412 1.24981 1.55815 1.16017 0.83198 0.80830 0.79785 1.43021 1.10521 1.30704 1.59716 1.90979 1.42973 1.64457 1.48703 1.22194 0.99299 0.99331 0.97019 1.21223 0.94605 0.97350 0.86800 0.90915 0.88442 0.91632 0.90538 0.91504 0.89015 0.77203 0.77745 0.75575 0.90463 0.90958 0.91572 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.90 13.96 55.43 0.77 -23.13 16 2 C 0.15 4.40 5.47 -17.82 -0.10 4.30 16 3 Si 0.80 20.55 26.54 -169.99 -4.51 16.04 16 4 H -0.25 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.25 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.22 -5.72 5.61 56.52 0.32 -5.40 16 7 C -1.02 -28.45 10.29 30.60 0.31 -28.14 16 8 H 0.12 3.45 8.06 -52.49 -0.42 3.03 16 9 S 2.68 66.15 4.23 -107.50 -0.45 65.70 16 10 O -1.01 -26.19 15.42 -57.17 -0.88 -27.07 16 11 O -1.01 -26.60 14.60 -57.17 -0.84 -27.43 16 12 N -1.00 -19.16 3.30 -113.77 -0.37 -19.54 16 13 C 0.13 2.12 6.45 -3.93 -0.03 2.10 16 14 C -0.14 -2.02 5.63 -26.83 -0.15 -2.17 16 15 C 0.16 2.06 2.42 -67.89 -0.16 1.90 16 16 N -0.74 -7.48 5.08 -58.63 -0.30 -7.77 16 17 C 0.70 8.19 8.80 -86.92 -0.77 7.43 16 18 N -0.87 -5.96 8.88 27.63 0.25 -5.72 16 19 O -0.59 -9.78 16.84 5.29 0.09 -9.69 16 20 C -0.14 -1.68 5.55 -26.61 -0.15 -1.82 16 21 C 0.13 1.99 6.48 -3.71 -0.02 1.96 16 22 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.10 1.75 6.91 -51.93 -0.36 1.39 16 24 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 28 H 0.39 2.78 8.62 -40.82 -0.35 2.43 16 29 H 0.40 1.43 8.84 -40.82 -0.36 1.07 16 30 H 0.41 2.45 8.93 -40.82 -0.36 2.09 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.64 6.92 -51.93 -0.36 1.28 16 LS Contribution 292.76 15.07 4.41 4.41 Total: -1.00 -35.88 292.76 -7.26 -43.14 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.37 Total: 5.52 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -1.06 Total: -14.44 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.35 Total: -56.16 kcal Atomic # 8 Polarization: -62.57 SS G_CDS: -1.63 Total: -64.20 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.51 Total: 16.04 kcal Atomic # 16 Polarization: 66.15 SS G_CDS: -0.45 Total: 65.70 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -35.88 -7.26 -43.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396794926.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.939 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds