Wall clock time and date at job start Mon Mar 30 2020 01:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48501 * 109.47295 * 269.99551 * 3 2 1 5 5 H 1.48505 * 109.47129 * 29.99704 * 3 2 1 6 6 H 1.48504 * 109.47322 * 149.99801 * 3 2 1 7 7 C 1.37881 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99334 * 0.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 180.02562 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.46923 * 120.62553 * 269.71992 * 12 9 7 14 14 C 1.52760 * 109.00861 * 233.58205 * 13 12 9 15 15 C 1.53046 * 109.38256 * 305.58983 * 14 13 12 16 16 N 1.46497 * 109.44518 * 181.25102 * 15 14 13 17 17 C 1.34784 * 120.00039 * 84.94761 * 16 15 14 18 18 N 1.34769 * 120.00045 * 179.97438 * 17 16 15 19 19 O 1.21583 * 119.99598 * 359.97438 * 17 16 15 20 20 C 1.53042 * 109.53591 * 61.23964 * 15 14 13 21 21 C 1.46921 * 120.63289 * 89.99915 * 12 9 7 22 22 H 0.96999 * 119.99997 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.59343 * 353.42265 * 13 12 9 24 24 H 1.09010 * 109.58634 * 113.84364 * 13 12 9 25 25 H 1.09006 * 109.56563 * 185.55777 * 14 13 12 26 26 H 1.09001 * 109.35973 * 65.50306 * 14 13 12 27 27 H 1.08998 * 109.46354 * 301.21868 * 15 14 13 28 28 H 0.97002 * 120.00183 * 264.93575 * 16 15 14 29 29 H 0.97002 * 120.00177 * 359.97438 * 18 17 16 30 30 H 0.97001 * 120.00450 * 179.97438 * 18 17 16 31 31 H 1.08998 * 109.49686 * 178.67995 * 20 15 14 32 32 H 1.09001 * 109.49965 * 58.58641 * 20 15 14 33 33 H 1.08997 * 109.58689 * 246.15965 * 21 12 9 34 34 H 1.08998 * 109.58450 * 6.44081 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 16 3.7665 -1.1940 0.0012 10 8 4.1683 -0.6498 -1.2485 11 8 4.1672 -0.6494 1.2510 12 7 4.2567 -2.7759 0.0011 13 6 4.4837 -3.4892 1.2653 14 6 5.8872 -4.0921 1.2513 15 6 6.0554 -4.9587 0.0012 16 7 7.3906 -5.5615 0.0016 17 6 7.6114 -6.7100 0.6715 18 7 8.8396 -7.2648 0.6714 19 8 6.7024 -7.2456 1.2758 20 6 5.8877 -4.0918 -1.2489 21 6 4.4788 -3.4907 -1.2632 22 1 -0.4850 0.8400 -0.0004 23 1 4.3949 -2.7928 2.0990 24 1 3.7477 -4.2863 1.3724 25 1 6.0299 -4.7055 2.1411 26 1 6.6250 -3.2898 1.2399 27 1 5.3016 -5.7460 0.0009 28 1 8.1159 -5.1341 -0.4804 29 1 9.5647 -6.8377 0.1890 30 1 8.9986 -8.0912 1.1538 31 1 6.0308 -4.7049 -2.1386 32 1 6.6255 -3.2895 -1.2369 33 1 3.7425 -4.2877 -1.3666 34 1 4.3843 -2.7955 -2.0974 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396794926.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:09 Heat of formation + Delta-G solvation = -146.633471 kcal Electronic energy + Delta-G solvation = -20353.494724 eV Core-core repulsion = 17025.588391 eV Total energy + Delta-G solvation = -3327.906333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.05681 -39.17615 -37.74611 -36.48513 -35.58348 -35.17459 -34.51513 -32.06787 -31.26596 -28.54327 -25.22017 -24.35870 -22.07962 -21.61814 -20.71990 -19.45005 -18.93103 -18.80054 -18.01153 -17.24614 -16.80279 -16.18803 -15.93985 -15.68588 -15.42858 -15.31830 -15.18977 -14.97034 -14.60612 -14.31005 -13.70913 -13.50255 -13.29417 -13.02499 -12.67942 -12.58626 -12.51505 -12.13691 -11.92383 -11.78331 -11.56057 -11.36149 -11.32526 -11.15974 -10.65433 -9.94639 -9.83081 -8.96431 -7.52553 0.10562 1.04893 1.14240 1.21286 1.89006 1.97503 2.23343 2.41476 2.44039 3.37983 3.63528 3.75331 3.82434 4.03679 4.11133 4.27105 4.29908 4.43172 4.62263 4.81158 4.82876 4.85331 5.01555 5.10582 5.23670 5.29986 5.40842 5.57265 5.87006 5.97403 6.01874 6.09728 6.53965 7.17645 7.72544 8.21717 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.046120 B = 0.004740 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.967297 B = 5906.091491 C = 5973.053925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.106 3.894 3 Si 0.826 3.174 4 H -0.236 1.236 5 H -0.221 1.221 6 H -0.227 1.227 7 C -1.043 5.043 8 H 0.102 0.898 9 S 2.698 3.302 10 O -1.022 7.022 11 O -1.026 7.026 12 N -0.998 5.998 13 C 0.118 3.882 14 C -0.134 4.134 15 C 0.169 3.831 16 N -0.727 5.727 17 C 0.698 3.302 18 N -0.848 5.848 19 O -0.646 6.646 20 C -0.127 4.127 21 C 0.112 3.888 22 H 0.291 0.709 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.413 0.587 29 H 0.414 0.586 30 H 0.419 0.581 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.652 -10.844 -2.509 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.110 4.110 3 Si 0.642 3.358 4 H -0.159 1.159 5 H -0.143 1.143 6 H -0.150 1.150 7 C -1.175 5.175 8 H 0.120 0.880 9 S 2.800 3.200 10 O -1.012 7.012 11 O -1.016 7.016 12 N -0.837 5.837 13 C -0.008 4.008 14 C -0.174 4.174 15 C 0.063 3.937 16 N -0.383 5.383 17 C 0.396 3.604 18 N -0.418 5.418 19 O -0.528 6.528 20 C -0.167 4.167 21 C -0.013 4.013 22 H 0.101 0.899 23 H 0.100 0.900 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.250 0.750 29 H 0.245 0.755 30 H 0.252 0.748 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.191 -10.338 -2.070 20.167 hybrid contribution -0.323 0.452 -0.038 0.557 sum 16.868 -9.886 -2.108 19.665 Atomic orbital electron populations 1.70021 1.07593 1.30484 1.40558 1.25225 0.95642 1.01601 0.88552 0.87480 0.82900 0.82604 0.82774 1.15891 1.14279 1.14975 1.31171 1.18601 1.01500 1.66244 0.87998 1.00545 0.75464 0.71694 0.72328 1.93357 1.84847 1.77258 1.45772 1.93412 1.84935 1.77279 1.45968 1.57364 1.83677 1.30285 1.12418 1.21359 0.97573 0.96935 0.84888 1.22152 0.96389 0.99465 0.99427 1.20636 0.84095 0.94477 0.94529 1.44989 1.13039 1.24558 1.55670 1.16238 0.83785 0.80933 0.79432 1.42788 1.09457 1.30528 1.58992 1.90951 1.44995 1.65889 1.50920 1.22113 0.96767 0.99696 0.98084 1.21585 0.97668 0.97349 0.84697 0.89862 0.89976 0.90663 0.90522 0.91115 0.90320 0.75028 0.75510 0.74781 0.87104 0.90216 0.90126 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.34 13.96 21.45 0.30 -50.04 16 2 C 0.11 6.18 5.47 84.66 0.46 6.64 16 3 Si 0.83 41.20 26.54 68.60 1.82 43.02 16 4 H -0.24 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.22 -9.72 7.11 99.48 0.71 -9.02 16 6 H -0.23 -11.60 5.61 99.48 0.56 -11.04 16 7 C -1.04 -59.59 10.29 67.74 0.70 -58.89 16 8 H 0.10 6.01 8.06 -2.91 -0.02 5.99 16 9 S 2.70 133.28 4.23 -56.49 -0.24 133.04 16 10 O -1.02 -52.42 15.42 -128.00 -1.97 -54.40 16 11 O -1.03 -54.23 14.60 -128.00 -1.87 -56.10 16 12 N -1.00 -37.56 3.30 -513.86 -1.69 -39.26 16 13 C 0.12 3.94 6.45 86.22 0.56 4.50 16 14 C -0.13 -3.61 5.63 30.53 0.17 -3.44 16 15 C 0.17 3.86 2.42 45.02 0.11 3.97 16 16 N -0.73 -12.48 5.08 -457.68 -2.33 -14.81 16 17 C 0.70 14.62 8.80 179.05 1.58 16.20 16 18 N -0.85 -9.12 8.88 -184.75 -1.64 -10.76 16 19 O -0.65 -20.56 16.84 -3.98 -0.07 -20.62 16 20 C -0.13 -2.68 5.55 30.67 0.17 -2.51 16 21 C 0.11 3.34 6.48 86.36 0.56 3.90 16 22 H 0.29 15.36 8.31 -92.71 -0.77 14.59 16 23 H 0.08 2.97 6.91 -2.39 -0.02 2.96 16 24 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 25 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.08 2.08 7.58 -2.39 -0.02 2.06 16 28 H 0.41 4.17 8.62 -92.71 -0.80 3.37 16 29 H 0.41 1.47 8.84 -92.71 -0.82 0.65 16 30 H 0.42 3.89 8.93 -92.71 -0.83 3.07 16 31 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.09 2.89 6.92 -2.39 -0.02 2.88 16 Total: -1.00 -78.21 292.76 -4.82 -83.03 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -1.44 Total: 16.52 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 4.30 Total: -29.63 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -5.36 Total: -114.86 kcal Atomic # 8 Polarization: -127.21 SS G_CDS: -3.91 Total: -131.12 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.82 Total: 43.02 kcal Atomic # 16 Polarization: 133.28 SS G_CDS: -0.24 Total: 133.04 kcal Total: -78.21 -4.82 -83.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396794926.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.602 kcal (2) G-P(sol) polarization free energy of solvation -78.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds