Wall clock time and date at job start Mon Mar 30 2020 02:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47328 * 24.27126 * 3 2 1 5 5 C 1.36892 * 120.00124 * 270.00405 * 4 3 2 6 6 H 1.07994 * 119.99815 * 142.34599 * 5 4 3 7 7 C 1.39032 * 119.99877 * 322.34136 * 5 4 3 8 8 N 1.31365 * 119.99900 * 157.74148 * 7 5 4 9 9 Si 1.86801 * 120.00173 * 337.74175 * 7 5 4 10 10 H 1.48497 * 109.47193 * 95.30820 * 9 7 5 11 11 H 1.48501 * 109.47105 * 215.31529 * 9 7 5 12 12 H 1.48506 * 109.46818 * 335.30822 * 9 7 5 13 13 C 1.34780 * 119.99549 * 90.00164 * 4 3 2 14 14 O 1.21608 * 119.99978 * 4.41207 * 13 4 3 15 15 C 1.47589 * 119.99552 * 184.14165 * 13 4 3 16 16 C 1.39775 * 120.15223 * 322.12869 * 15 13 4 17 17 C 1.37827 * 119.98082 * 179.77128 * 16 15 13 18 18 C 1.38429 * 120.27025 * 0.48534 * 17 16 15 19 19 C 1.38637 * 120.29708 * 359.78948 * 18 17 16 20 20 O 1.35975 * 119.99009 * 179.97438 * 19 18 17 21 21 C 1.42895 * 116.99876 * 359.97438 * 20 19 18 22 22 C 1.38783 * 120.02131 * 359.95725 * 19 18 17 23 23 F 1.35104 * 120.13951 * 180.02562 * 22 19 18 24 24 H 4.40646 * 5.51379 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47206 * 264.27502 * 3 2 1 26 26 H 1.08992 * 109.47366 * 144.27344 * 3 2 1 27 27 H 0.97001 * 120.00417 * 179.97438 * 8 7 5 28 28 H 1.08005 * 120.00499 * 0.02562 * 16 15 13 29 29 H 1.07995 * 119.86632 * 180.23430 * 17 16 15 30 30 H 1.08002 * 119.85416 * 179.76896 * 18 17 16 31 31 H 1.08999 * 109.47332 * 179.97438 * 21 20 19 32 32 H 1.09003 * 109.47563 * 300.00447 * 21 20 19 33 33 H 1.09007 * 109.47132 * 60.00051 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2583 -0.5678 5 6 3.3636 -2.3338 0.2477 6 1 3.1291 -3.3307 -0.0951 7 6 3.8976 -2.1427 1.5170 8 7 3.7218 -3.0531 2.4475 9 14 4.8653 -0.5912 1.8993 10 1 3.9651 0.4130 2.5208 11 1 5.9691 -0.9151 2.8385 12 1 5.4310 -0.0384 0.6425 13 6 3.3597 -1.3575 -1.8930 14 8 3.2338 -0.3803 -2.6059 15 6 3.7643 -2.6506 -2.4780 16 6 4.6371 -3.4930 -1.7836 17 6 5.0089 -4.7020 -2.3311 18 6 4.5292 -5.0828 -3.5725 19 6 3.6674 -4.2536 -4.2738 20 8 3.2004 -4.6336 -5.4929 21 6 3.6394 -5.8993 -5.9901 22 6 3.2809 -3.0359 -3.7316 23 9 2.4407 -2.2262 -4.4127 24 1 -1.0498 -0.0003 -0.0003 25 1 3.0093 0.1033 1.0225 26 1 3.0090 0.8350 -0.6000 27 1 4.0947 -2.9200 3.3330 28 1 5.0169 -3.1984 -0.8164 29 1 5.6805 -5.3531 -1.7913 30 1 4.8279 -6.0300 -3.9969 31 1 3.1937 -6.0799 -6.9682 32 1 4.7257 -5.8974 -6.0801 33 1 3.3335 -6.6864 -5.3008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397464397.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:59 Heat of formation + Delta-G solvation = -8.756897 kcal Electronic energy + Delta-G solvation = -21327.103260 eV Core-core repulsion = 17849.811792 eV Total energy + Delta-G solvation = -3477.291469 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.20461 -39.84860 -38.98719 -36.73675 -35.32720 -32.78799 -31.81225 -30.47324 -29.92208 -27.22100 -26.88521 -25.18357 -22.77880 -22.06246 -19.64749 -18.63228 -17.99199 -16.85803 -16.80658 -16.29624 -16.01046 -15.81902 -15.21052 -14.67463 -14.46843 -14.35549 -14.16650 -13.91613 -13.19296 -13.08907 -12.67203 -12.43166 -12.25483 -12.01634 -11.92480 -11.24918 -11.14859 -11.03452 -10.95087 -10.68565 -10.27923 -9.86615 -9.53202 -9.31299 -8.81451 -8.44785 -8.11545 -7.80067 -6.64898 -4.23476 1.25999 1.67533 2.92498 3.08866 3.10500 3.17756 3.36245 3.50073 3.51969 3.96982 4.14451 4.40864 4.62518 4.75453 4.95128 5.09578 5.12979 5.15685 5.33590 5.41716 5.57764 5.66759 5.85697 5.97651 6.15853 6.26714 6.39289 6.51355 6.79191 6.82819 6.98443 7.11342 7.52655 7.85386 8.07872 8.24966 8.72866 9.10461 9.43794 10.43346 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.006705 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.800047 B = 4175.217986 C = 4991.456959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.167 4.167 3 C 0.201 3.799 4 N -0.449 5.449 5 C -0.354 4.354 6 H 0.113 0.887 7 C 0.070 3.930 8 N -0.844 5.844 9 Si 0.863 3.137 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.254 1.254 13 C 0.524 3.476 14 O -0.575 6.575 15 C -0.098 4.098 16 C -0.066 4.066 17 C -0.111 4.111 18 C -0.172 4.172 19 C 0.069 3.931 20 O -0.314 6.314 21 C 0.029 3.971 22 C 0.109 3.891 23 F -0.122 7.122 24 H 0.213 0.787 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.279 0.721 28 H 0.168 0.832 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.425 -4.835 -7.239 9.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.169 4.169 3 C 0.080 3.920 4 N -0.168 5.168 5 C -0.481 4.481 6 H 0.131 0.869 7 C -0.139 4.139 8 N -0.478 5.478 9 Si 0.689 3.311 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.178 1.178 13 C 0.314 3.686 14 O -0.459 6.459 15 C -0.102 4.102 16 C -0.084 4.084 17 C -0.129 4.129 18 C -0.191 4.191 19 C 0.024 3.976 20 O -0.228 6.228 21 C -0.066 4.066 22 C 0.088 3.912 23 F -0.100 7.100 24 H 0.230 0.770 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.089 0.911 28 H 0.185 0.815 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.252 -4.287 -7.515 8.940 hybrid contribution 0.141 0.376 0.448 0.601 sum 2.393 -3.911 -7.067 8.424 Atomic orbital electron populations 1.24662 0.95634 1.01213 1.02482 1.23598 0.94797 0.99502 0.98955 1.18695 0.84122 0.89531 0.99678 1.43490 1.56082 1.11582 1.05642 1.19230 1.43822 0.88024 0.97002 0.86929 1.25307 0.95991 0.97569 0.95027 1.69750 1.39565 1.35600 1.02870 0.87124 0.80746 0.83377 0.79804 1.19634 1.20713 1.17811 1.17888 0.80530 0.87365 0.82842 1.90701 1.56250 1.38035 1.60895 1.19810 1.00433 0.97165 0.92748 1.21918 0.94375 0.91986 1.00170 1.20976 1.00329 0.97159 0.94484 1.21150 1.00719 1.00207 0.97025 1.18705 0.98187 0.93829 0.86880 1.86112 1.68248 1.37445 1.30996 1.23026 1.00085 0.83794 0.99696 1.16955 0.95163 0.87902 0.91173 1.91510 1.68164 1.71664 1.78705 0.77015 0.89177 0.88394 0.91094 0.81514 0.85002 0.85023 0.88430 0.92722 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.31 19.25 29.55 0.57 -3.74 16 2 C -0.17 -3.72 13.67 -37.12 -0.51 -4.23 16 3 C 0.20 4.59 4.73 -6.83 -0.03 4.56 16 4 N -0.45 -10.93 2.13 -119.10 -0.25 -11.18 16 5 C -0.35 -8.79 6.83 -15.00 -0.10 -8.89 16 6 H 0.11 2.93 6.41 -52.49 -0.34 2.59 16 7 C 0.07 1.73 5.30 -17.46 -0.09 1.64 16 8 N -0.84 -21.73 13.95 55.50 0.77 -20.96 16 9 Si 0.86 18.78 25.05 -169.99 -4.26 14.53 16 10 H -0.27 -5.71 6.67 56.52 0.38 -5.33 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.25 -5.56 7.11 56.52 0.40 -5.16 16 13 C 0.52 12.93 7.21 -12.44 -0.09 12.84 16 14 O -0.58 -15.33 15.74 5.27 0.08 -15.25 16 15 C -0.10 -2.14 5.38 -104.94 -0.56 -2.70 16 16 C -0.07 -1.26 7.70 -39.16 -0.30 -1.57 16 17 C -0.11 -1.72 10.02 -39.66 -0.40 -2.12 16 18 C -0.17 -2.52 9.03 -39.36 -0.36 -2.87 16 19 C 0.07 1.21 6.69 -39.23 -0.26 0.95 16 20 O -0.31 -5.00 10.36 -19.66 -0.20 -5.20 16 21 C 0.03 0.29 9.81 101.05 0.99 1.28 16 22 C 0.11 2.30 7.25 -38.81 -0.28 2.02 16 23 F -0.12 -2.80 16.03 2.25 0.04 -2.77 16 24 H 0.21 3.11 7.80 -54.10 -0.42 2.68 16 25 H 0.09 2.01 3.27 -51.93 -0.17 1.84 16 26 H 0.10 2.14 7.36 -51.93 -0.38 1.75 16 27 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.17 3.36 5.94 -52.48 -0.31 3.05 16 29 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 30 H 0.13 1.44 6.27 -52.49 -0.33 1.11 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 33 H 0.05 0.49 7.66 -51.92 -0.40 0.09 16 LS Contribution 293.90 15.07 4.43 4.43 Total: -1.00 -30.67 293.90 -3.57 -34.24 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -2.75 Total: 4.98 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -1.43 Total: -2.83 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.52 Total: -32.14 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.12 Total: -20.45 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.04 Total: -2.77 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.26 Total: 14.53 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.67 -3.57 -34.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397464397.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.485 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds