Wall clock time and date at job start Mon Mar 30 2020 02:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47328 * 24.27126 * 3 2 1 5 5 C 1.36892 * 120.00124 * 270.00405 * 4 3 2 6 6 H 1.07994 * 119.99815 * 142.34599 * 5 4 3 7 7 C 1.39032 * 119.99877 * 322.34136 * 5 4 3 8 8 N 1.31365 * 119.99900 * 157.74148 * 7 5 4 9 9 Si 1.86801 * 120.00173 * 337.74175 * 7 5 4 10 10 H 1.48497 * 109.47193 * 95.30820 * 9 7 5 11 11 H 1.48501 * 109.47105 * 215.31529 * 9 7 5 12 12 H 1.48506 * 109.46818 * 335.30822 * 9 7 5 13 13 C 1.34780 * 119.99549 * 90.00164 * 4 3 2 14 14 O 1.21608 * 119.99978 * 4.41207 * 13 4 3 15 15 C 1.47589 * 119.99552 * 184.14165 * 13 4 3 16 16 C 1.39775 * 120.15223 * 322.12869 * 15 13 4 17 17 C 1.37827 * 119.98082 * 179.77128 * 16 15 13 18 18 C 1.38429 * 120.27025 * 0.48534 * 17 16 15 19 19 C 1.38637 * 120.29708 * 359.78948 * 18 17 16 20 20 O 1.35975 * 119.99009 * 179.97438 * 19 18 17 21 21 C 1.42895 * 116.99876 * 359.97438 * 20 19 18 22 22 C 1.38783 * 120.02131 * 359.95725 * 19 18 17 23 23 F 1.35104 * 120.13951 * 180.02562 * 22 19 18 24 24 H 4.40646 * 5.51379 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47206 * 264.27502 * 3 2 1 26 26 H 1.08992 * 109.47366 * 144.27344 * 3 2 1 27 27 H 0.97001 * 120.00417 * 179.97438 * 8 7 5 28 28 H 1.08005 * 120.00499 * 0.02562 * 16 15 13 29 29 H 1.07995 * 119.86632 * 180.23430 * 17 16 15 30 30 H 1.08002 * 119.85416 * 179.76896 * 18 17 16 31 31 H 1.08999 * 109.47332 * 179.97438 * 21 20 19 32 32 H 1.09003 * 109.47563 * 300.00447 * 21 20 19 33 33 H 1.09007 * 109.47132 * 60.00051 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2583 -0.5678 5 6 3.3636 -2.3338 0.2477 6 1 3.1291 -3.3307 -0.0951 7 6 3.8976 -2.1427 1.5170 8 7 3.7218 -3.0531 2.4475 9 14 4.8653 -0.5912 1.8993 10 1 3.9651 0.4130 2.5208 11 1 5.9691 -0.9151 2.8385 12 1 5.4310 -0.0384 0.6425 13 6 3.3597 -1.3575 -1.8930 14 8 3.2338 -0.3803 -2.6059 15 6 3.7643 -2.6506 -2.4780 16 6 4.6371 -3.4930 -1.7836 17 6 5.0089 -4.7020 -2.3311 18 6 4.5292 -5.0828 -3.5725 19 6 3.6674 -4.2536 -4.2738 20 8 3.2004 -4.6336 -5.4929 21 6 3.6394 -5.8993 -5.9901 22 6 3.2809 -3.0359 -3.7316 23 9 2.4407 -2.2262 -4.4127 24 1 -1.0498 -0.0003 -0.0003 25 1 3.0093 0.1033 1.0225 26 1 3.0090 0.8350 -0.6000 27 1 4.0947 -2.9200 3.3330 28 1 5.0169 -3.1984 -0.8164 29 1 5.6805 -5.3531 -1.7913 30 1 4.8279 -6.0300 -3.9969 31 1 3.1937 -6.0799 -6.9682 32 1 4.7257 -5.8974 -6.0801 33 1 3.3335 -6.6864 -5.3008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397464397.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:58 Heat of formation + Delta-G solvation = -28.543504 kcal Electronic energy + Delta-G solvation = -21327.961272 eV Core-core repulsion = 17849.811792 eV Total energy + Delta-G solvation = -3478.149480 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.83248 -41.35642 -40.52026 -38.10206 -37.22028 -34.55302 -33.61956 -31.93131 -31.23425 -28.58608 -28.19874 -27.04119 -24.27264 -23.44234 -21.31410 -20.38413 -19.47416 -18.40257 -18.34354 -17.80876 -17.61304 -17.19869 -16.88198 -16.22313 -16.02976 -15.85121 -15.60883 -15.34674 -14.96645 -14.77683 -14.45378 -14.06997 -13.70477 -13.32488 -13.24364 -12.90562 -12.80743 -12.40918 -12.20992 -12.08435 -11.92277 -11.59891 -11.35084 -11.03048 -10.65667 -10.01807 -9.89498 -9.18693 -8.55550 -6.17681 -0.19700 0.28528 1.17481 1.31464 1.42314 1.47203 1.82135 1.85479 2.14606 2.15858 2.61568 2.72781 2.94663 3.22653 3.52489 3.74001 3.90705 4.06713 4.16843 4.29472 4.36849 4.44084 4.45577 4.51659 4.76128 4.91603 4.98796 5.07234 5.24784 5.35831 5.44242 5.65247 5.95847 6.13476 6.32859 6.63136 6.81978 7.19855 7.55929 8.55430 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.006705 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.800047 B = 4175.217986 C = 4991.456959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.236 4.236 3 C 0.197 3.803 4 N -0.454 5.454 5 C -0.352 4.352 6 H 0.094 0.906 7 C 0.044 3.956 8 N -0.875 5.875 9 Si 0.908 3.092 10 H -0.260 1.260 11 H -0.270 1.270 12 H -0.262 1.262 13 C 0.513 3.487 14 O -0.609 6.609 15 C -0.128 4.128 16 C -0.079 4.079 17 C -0.093 4.093 18 C -0.149 4.149 19 C 0.078 3.922 20 O -0.336 6.336 21 C 0.015 3.985 22 C 0.069 3.931 23 F -0.145 7.145 24 H 0.260 0.740 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.285 0.715 28 H 0.151 0.849 29 H 0.173 0.827 30 H 0.183 0.817 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 -6.853 -7.682 10.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.237 4.237 3 C 0.076 3.924 4 N -0.172 5.172 5 C -0.479 4.479 6 H 0.112 0.888 7 C -0.163 4.163 8 N -0.510 5.510 9 Si 0.733 3.267 10 H -0.186 1.186 11 H -0.195 1.195 12 H -0.186 1.186 13 C 0.305 3.695 14 O -0.495 6.495 15 C -0.132 4.132 16 C -0.098 4.098 17 C -0.110 4.110 18 C -0.167 4.167 19 C 0.032 3.968 20 O -0.251 6.251 21 C -0.079 4.079 22 C 0.048 3.952 23 F -0.124 7.124 24 H 0.276 0.724 25 H 0.109 0.891 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.169 0.831 29 H 0.190 0.810 30 H 0.201 0.799 31 H 0.138 0.862 32 H 0.094 0.906 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.760 -6.320 -7.949 10.523 hybrid contribution -0.078 0.864 0.465 0.984 sum 2.682 -5.456 -7.484 9.642 Atomic orbital electron populations 1.25744 0.96563 0.98051 0.99367 1.23845 0.95545 1.02453 1.01882 1.18685 0.85307 0.88887 0.99527 1.43600 1.56045 1.11915 1.05669 1.19047 1.44103 0.87607 0.97103 0.88803 1.25703 0.96208 0.99762 0.94644 1.69785 1.40629 1.37172 1.03443 0.86404 0.79991 0.80880 0.79437 1.18583 1.19509 1.18642 1.18466 0.79926 0.88324 0.82830 1.90642 1.57850 1.39496 1.61534 1.19748 1.02646 0.96864 0.93908 1.21821 0.94748 0.93453 0.99756 1.21403 0.99404 0.95558 0.94680 1.21662 0.98130 1.01061 0.95890 1.18779 0.97693 0.92637 0.87650 1.86106 1.68601 1.40334 1.30041 1.23494 1.01774 0.81616 1.01020 1.17340 0.96618 0.89661 0.91571 1.91429 1.69128 1.72701 1.79127 0.72433 0.89059 0.88593 0.90496 0.83144 0.80989 0.79950 0.86208 0.90604 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.74 19.25 74.32 1.43 -5.31 16 2 C -0.24 -10.65 13.67 31.12 0.43 -10.22 16 3 C 0.20 9.31 4.73 84.57 0.40 9.70 16 4 N -0.45 -22.98 2.13 -648.97 -1.38 -24.36 16 5 C -0.35 -18.01 6.83 84.09 0.57 -17.43 16 6 H 0.09 5.08 6.41 -2.91 -0.02 5.06 16 7 C 0.04 2.18 5.30 84.95 0.45 2.63 16 8 N -0.88 -45.32 13.95 21.68 0.30 -45.01 16 9 Si 0.91 38.96 25.05 68.60 1.72 40.68 16 10 H -0.26 -10.67 6.67 99.48 0.66 -10.01 16 11 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 12 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 13 C 0.51 26.65 7.21 86.71 0.62 27.28 16 14 O -0.61 -34.35 15.74 -4.06 -0.06 -34.41 16 15 C -0.13 -5.81 5.38 -20.07 -0.11 -5.92 16 16 C -0.08 -3.04 7.70 22.54 0.17 -2.87 16 17 C -0.09 -2.60 10.02 22.22 0.22 -2.38 16 18 C -0.15 -3.78 9.03 22.41 0.20 -3.58 16 19 C 0.08 2.62 6.69 22.50 0.15 2.77 16 20 O -0.34 -10.00 10.36 -93.27 -0.97 -10.97 16 21 C 0.01 0.23 9.81 113.37 1.11 1.34 16 22 C 0.07 2.98 7.25 22.77 0.17 3.15 16 23 F -0.15 -7.01 16.03 44.97 0.72 -6.29 16 24 H 0.26 6.66 7.80 -4.43 -0.03 6.62 16 25 H 0.09 4.16 3.27 -2.39 -0.01 4.15 16 26 H 0.10 4.42 7.36 -2.39 -0.02 4.40 16 27 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 28 H 0.15 6.23 5.94 -2.91 -0.02 6.21 16 29 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.18 2.79 6.27 -2.91 -0.02 2.77 16 31 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 0.92 7.66 -2.39 -0.02 0.90 16 33 H 0.07 0.93 7.66 -2.38 -0.02 0.91 16 Total: -1.00 -70.86 293.90 7.27 -63.59 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 1.11 Total: 17.60 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 5.82 Total: -0.83 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -1.08 Total: -69.37 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -1.03 Total: -45.38 kcal Atomic # 9 Polarization: -7.01 SS G_CDS: 0.72 Total: -6.29 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 1.72 Total: 40.68 kcal Total: -70.86 7.27 -63.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397464397.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.045 kcal (2) G-P(sol) polarization free energy of solvation -70.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds