Wall clock time and date at job start Mon Mar 30 2020 01:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39662 * 120.12452 * 342.47719 * 3 2 1 5 5 C 1.37957 * 119.95872 * 179.97438 * 4 3 2 6 6 C 1.38293 * 120.21151 * 359.72622 * 5 4 3 7 7 C 1.38817 * 120.24742 * 0.55123 * 6 5 4 8 8 O 1.35912 * 119.97895 * 179.72713 * 7 6 5 9 9 C 1.42898 * 117.00151 * 359.72100 * 8 7 6 10 10 C 1.52997 * 109.47319 * 180.02562 * 9 8 7 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 8 12 12 S 1.81400 * 109.47583 * 179.97438 * 11 10 9 13 13 C 1.81401 * 103.00225 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47130 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99847 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00179 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00022 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00302 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46784 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47115 * 120.00177 * 18 16 14 21 21 H 1.48495 * 109.47109 * 240.00233 * 18 16 14 22 22 C 1.38482 * 120.03977 * 359.44785 * 7 6 5 23 23 H 1.07995 * 120.02236 * 359.95838 * 4 3 2 24 24 H 1.07995 * 119.89837 * 180.02562 * 5 4 3 25 25 H 1.08000 * 119.87978 * 180.27561 * 6 5 4 26 26 H 1.09002 * 109.47259 * 300.00539 * 9 8 7 27 27 H 1.09001 * 109.47074 * 60.00560 * 9 8 7 28 28 H 1.09002 * 109.47153 * 300.00307 * 10 9 8 29 29 H 1.08998 * 109.47533 * 59.99936 * 10 9 8 30 30 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 31 31 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 32 32 H 1.08997 * 109.47110 * 300.00260 * 13 12 11 33 33 H 1.09001 * 109.46880 * 60.00508 * 13 12 11 34 34 H 0.96996 * 119.99966 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.10734 * 180.25254 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -1.1510 0.3637 5 6 4.6490 -1.1467 0.3620 6 6 5.3409 -0.0067 -0.0044 7 6 4.6525 1.1445 -0.3619 8 8 5.3381 2.2634 -0.7157 9 6 6.7647 2.1851 -0.6913 10 6 7.3567 3.5305 -1.1160 11 6 8.8841 3.4465 -1.0905 12 16 9.5860 5.0414 -1.5947 13 6 11.3737 4.7480 -1.5024 14 6 12.1097 6.0017 -1.8995 15 1 11.5572 6.8866 -2.1790 16 6 13.4883 6.0194 -1.9049 17 7 14.1611 4.9419 -1.5641 18 14 14.4006 7.5736 -2.3964 19 1 13.4205 8.6375 -2.7324 20 1 15.2532 8.0251 -1.2675 21 1 15.2533 7.2939 -3.5796 22 6 3.2677 1.1517 -0.3639 23 1 2.7323 -2.0442 0.6464 24 1 5.1904 -2.0379 0.6430 25 1 6.4209 -0.0107 -0.0081 26 1 7.0982 1.9442 0.3181 27 1 7.0978 1.4079 -1.3792 28 1 7.0232 3.7718 -2.1253 29 1 7.0237 4.3075 -0.4279 30 1 9.2179 3.2050 -0.0813 31 1 9.2168 2.6697 -1.7789 32 1 11.6449 4.4746 -0.4827 33 1 11.6445 3.9383 -2.1800 34 1 15.1310 4.9545 -1.5676 35 1 2.7311 2.0455 -0.6458 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013235.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:26 Heat of formation + Delta-G solvation = -2.748193 kcal Electronic energy + Delta-G solvation = -16891.506576 eV Core-core repulsion = 13980.688840 eV Total energy + Delta-G solvation = -2910.817736 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59917 -38.35126 -36.58513 -34.00566 -33.18530 -31.80757 -30.46167 -28.58950 -26.85610 -24.36631 -23.17217 -22.87970 -21.47798 -19.70542 -17.04040 -16.71357 -16.55159 -16.45725 -16.38056 -15.32199 -14.70454 -14.69748 -14.42541 -14.15341 -13.95012 -13.61456 -13.10535 -12.88810 -12.79874 -12.57560 -12.30892 -12.22651 -11.96798 -11.82776 -11.54334 -11.20545 -10.93888 -10.73664 -10.67152 -9.97936 -9.57950 -9.48844 -8.92584 -8.68664 -8.65796 -6.76315 -6.23646 -4.27753 0.29464 0.92789 2.19350 2.42502 2.54288 2.93998 3.22637 3.30059 3.36423 3.43831 3.54309 3.80622 4.30346 4.32462 4.56319 4.60553 4.74411 4.75227 4.91834 4.99150 5.10478 5.13823 5.27279 5.30878 5.44563 5.68319 5.74925 5.84057 5.88557 6.01496 6.09018 6.21252 7.01507 7.03922 7.05420 7.07052 7.71563 7.96700 8.74578 9.35719 10.87728 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.061395 B = 0.002183 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.956474 B =12820.491189 C =13245.396459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.258 3.742 3 C 0.008 3.992 4 C -0.113 4.113 5 C -0.078 4.078 6 C -0.180 4.180 7 C 0.137 3.863 8 O -0.309 6.309 9 C 0.062 3.938 10 C -0.099 4.099 11 C -0.089 4.089 12 S -0.303 6.303 13 C 0.091 3.909 14 C -0.512 4.512 15 H 0.068 0.932 16 C 0.064 3.936 17 N -0.893 5.893 18 Si 0.907 3.093 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.107 4.107 23 H 0.133 0.867 24 H 0.137 0.863 25 H 0.138 0.862 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.265 0.735 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.980 -13.042 4.124 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.058 4.058 3 C 0.005 3.995 4 C -0.134 4.134 5 C -0.096 4.096 6 C -0.200 4.200 7 C 0.091 3.909 8 O -0.222 6.222 9 C -0.014 4.014 10 C -0.137 4.137 11 C -0.238 4.238 12 S -0.076 6.076 13 C -0.055 4.055 14 C -0.552 4.552 15 H 0.086 0.914 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.734 3.266 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.128 4.128 23 H 0.151 0.849 24 H 0.155 0.845 25 H 0.156 0.844 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.157 -11.991 3.791 22.916 hybrid contribution 1.966 -0.580 0.184 2.058 sum -17.190 -12.571 3.975 21.664 Atomic orbital electron populations 1.81275 1.11987 1.07303 1.08342 1.25604 0.92530 0.93812 0.93849 1.15630 0.84201 0.95181 1.04502 1.21065 0.94327 0.97007 1.00956 1.20907 0.93423 0.97990 0.97311 1.21618 1.01262 0.93209 1.03898 1.18758 0.91225 0.86290 0.94631 1.86105 1.20818 1.32864 1.82417 1.22991 0.76925 0.99874 1.01624 1.21226 0.93080 0.95421 1.03978 1.23046 0.96442 1.00347 1.03930 1.86690 1.12973 1.17908 1.90042 1.21058 0.83430 1.00898 1.00152 1.20728 0.90836 0.96962 1.46624 0.91363 1.24974 0.97113 0.96985 0.94867 1.69960 1.07565 1.28031 1.47603 0.86285 0.79563 0.82539 0.78227 1.19381 1.20722 1.20716 1.20360 0.91324 0.98339 1.02786 0.84878 0.84531 0.84417 0.91478 0.91475 0.89958 0.89952 0.90662 0.90664 0.94594 0.94595 0.92536 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.75 18.54 41.84 0.78 -3.97 16 2 C 0.26 2.36 15.33 -22.47 -0.34 2.01 16 3 C 0.01 0.06 5.73 -106.96 -0.61 -0.55 16 4 C -0.11 -0.66 9.75 -39.15 -0.38 -1.05 16 5 C -0.08 -0.43 10.03 -39.66 -0.40 -0.83 16 6 C -0.18 -1.25 9.03 -39.35 -0.36 -1.61 16 7 C 0.14 1.19 6.68 -39.28 -0.26 0.93 16 8 O -0.31 -3.16 10.13 -19.46 -0.20 -3.36 16 9 C 0.06 0.58 4.74 37.16 0.18 0.76 16 10 C -0.10 -1.19 5.59 -26.74 -0.15 -1.34 16 11 C -0.09 -1.32 5.94 37.15 0.22 -1.10 16 12 S -0.30 -6.29 21.66 -107.50 -2.33 -8.62 16 13 C 0.09 2.31 5.70 36.00 0.21 2.51 16 14 C -0.51 -14.21 9.13 -34.44 -0.31 -14.52 16 15 H 0.07 1.90 7.71 -52.48 -0.40 1.50 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 18 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.11 -0.86 9.69 -39.01 -0.38 -1.24 16 23 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 24 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 25 H 0.14 0.79 6.28 -52.49 -0.33 0.46 16 26 H 0.07 0.54 7.67 -51.93 -0.40 0.15 16 27 H 0.07 0.54 7.64 -51.93 -0.40 0.15 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -30.41 327.90 -8.25 -38.67 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: -4.47 Total: -4.56 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -2.69 Total: -14.35 kcal Atomic # 7 Polarization: -30.27 SS G_CDS: 1.51 Total: -28.75 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: -0.20 Total: -3.36 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -6.29 SS G_CDS: -2.33 Total: -8.62 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.41 -8.25 -38.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013235.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.920 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds