Wall clock time and date at job start Mon Mar 30 2020 01:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39662 * 120.12452 * 342.47719 * 3 2 1 5 5 C 1.37957 * 119.95872 * 179.97438 * 4 3 2 6 6 C 1.38293 * 120.21151 * 359.72622 * 5 4 3 7 7 C 1.38817 * 120.24742 * 0.55123 * 6 5 4 8 8 O 1.35912 * 119.97895 * 179.72713 * 7 6 5 9 9 C 1.42898 * 117.00151 * 359.72100 * 8 7 6 10 10 C 1.52997 * 109.47319 * 180.02562 * 9 8 7 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 8 12 12 S 1.81400 * 109.47583 * 179.97438 * 11 10 9 13 13 C 1.81401 * 103.00225 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47130 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99847 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00179 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00022 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00302 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46784 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47115 * 120.00177 * 18 16 14 21 21 H 1.48495 * 109.47109 * 240.00233 * 18 16 14 22 22 C 1.38482 * 120.03977 * 359.44785 * 7 6 5 23 23 H 1.07995 * 120.02236 * 359.95838 * 4 3 2 24 24 H 1.07995 * 119.89837 * 180.02562 * 5 4 3 25 25 H 1.08000 * 119.87978 * 180.27561 * 6 5 4 26 26 H 1.09002 * 109.47259 * 300.00539 * 9 8 7 27 27 H 1.09001 * 109.47074 * 60.00560 * 9 8 7 28 28 H 1.09002 * 109.47153 * 300.00307 * 10 9 8 29 29 H 1.08998 * 109.47533 * 59.99936 * 10 9 8 30 30 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 31 31 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 32 32 H 1.08997 * 109.47110 * 300.00260 * 13 12 11 33 33 H 1.09001 * 109.46880 * 60.00508 * 13 12 11 34 34 H 0.96996 * 119.99966 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.10734 * 180.25254 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -1.1510 0.3637 5 6 4.6490 -1.1467 0.3620 6 6 5.3409 -0.0067 -0.0044 7 6 4.6525 1.1445 -0.3619 8 8 5.3381 2.2634 -0.7157 9 6 6.7647 2.1851 -0.6913 10 6 7.3567 3.5305 -1.1160 11 6 8.8841 3.4465 -1.0905 12 16 9.5860 5.0414 -1.5947 13 6 11.3737 4.7480 -1.5024 14 6 12.1097 6.0017 -1.8995 15 1 11.5572 6.8866 -2.1790 16 6 13.4883 6.0194 -1.9049 17 7 14.1611 4.9419 -1.5641 18 14 14.4006 7.5736 -2.3964 19 1 13.4205 8.6375 -2.7324 20 1 15.2532 8.0251 -1.2675 21 1 15.2533 7.2939 -3.5796 22 6 3.2677 1.1517 -0.3639 23 1 2.7323 -2.0442 0.6464 24 1 5.1904 -2.0379 0.6430 25 1 6.4209 -0.0107 -0.0081 26 1 7.0982 1.9442 0.3181 27 1 7.0978 1.4079 -1.3792 28 1 7.0232 3.7718 -2.1253 29 1 7.0237 4.3075 -0.4279 30 1 9.2179 3.2050 -0.0813 31 1 9.2168 2.6697 -1.7789 32 1 11.6449 4.4746 -0.4827 33 1 11.6445 3.9383 -2.1800 34 1 15.1310 4.9545 -1.5676 35 1 2.7311 2.0455 -0.6458 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413013235.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:25 Heat of formation + Delta-G solvation = -18.369277 kcal Electronic energy + Delta-G solvation = -16892.183957 eV Core-core repulsion = 13980.688840 eV Total energy + Delta-G solvation = -2911.495117 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20011 -39.01281 -37.32512 -35.28762 -34.97318 -32.35482 -31.06983 -30.66000 -27.75449 -25.39129 -24.80664 -23.42966 -22.48671 -20.32855 -18.63516 -17.67738 -17.35028 -17.32567 -16.99176 -16.93776 -16.26826 -15.64544 -15.15589 -14.99914 -14.84813 -14.51648 -14.37130 -14.29747 -14.15226 -13.72860 -13.48511 -13.36761 -12.90783 -12.77023 -12.60792 -12.47292 -12.40924 -11.98207 -11.73800 -11.57162 -11.45374 -10.74512 -10.67554 -10.02800 -9.25916 -8.46784 -8.33287 -6.45777 -0.27176 0.41228 0.96275 1.40600 1.41472 1.51036 1.55973 1.89720 2.05214 2.18028 2.37521 2.86659 2.88402 3.01592 3.79580 3.87170 4.00118 4.04311 4.08587 4.19179 4.33168 4.33654 4.47982 4.55494 4.60559 4.88719 4.95983 4.96221 5.01343 5.14367 5.20072 5.33688 5.39600 5.58103 5.63687 5.90046 6.35911 6.40527 6.61821 7.22358 8.78779 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.061395 B = 0.002183 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.956474 B =12820.491189 C =13245.396459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.281 3.719 3 C -0.002 4.002 4 C -0.102 4.102 5 C -0.073 4.073 6 C -0.177 4.177 7 C 0.116 3.884 8 O -0.328 6.328 9 C 0.068 3.932 10 C -0.092 4.092 11 C -0.073 4.073 12 S -0.324 6.324 13 C 0.094 3.906 14 C -0.537 4.537 15 H 0.060 0.940 16 C 0.014 3.986 17 N -0.924 5.924 18 Si 0.975 3.025 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.273 1.273 22 C -0.115 4.115 23 H 0.155 0.845 24 H 0.168 0.832 25 H 0.153 0.847 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.270 0.730 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.857 -14.208 4.491 22.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.034 4.034 3 C -0.006 4.006 4 C -0.123 4.123 5 C -0.091 4.091 6 C -0.196 4.196 7 C 0.071 3.929 8 O -0.242 6.242 9 C -0.008 4.008 10 C -0.130 4.130 11 C -0.221 4.221 12 S -0.097 6.097 13 C -0.053 4.053 14 C -0.576 4.576 15 H 0.079 0.921 16 C -0.186 4.186 17 N -0.563 5.563 18 Si 0.799 3.201 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.198 1.198 22 C -0.136 4.136 23 H 0.173 0.827 24 H 0.185 0.815 25 H 0.171 0.829 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.044 -13.159 4.159 23.518 hybrid contribution 1.857 -0.325 0.104 1.888 sum -17.187 -13.484 4.263 22.257 Atomic orbital electron populations 1.81292 1.13314 1.08840 1.10213 1.25825 0.92694 0.92430 0.92439 1.15665 0.83185 0.95883 1.05844 1.21380 0.94770 0.96911 0.99189 1.21261 0.93220 0.98532 0.96097 1.21879 1.02128 0.92846 1.02797 1.18881 0.91287 0.86589 0.96164 1.86041 1.21003 1.34026 1.83140 1.22865 0.76859 0.98122 1.02947 1.21078 0.90947 0.97316 1.03668 1.23114 0.97900 0.96444 1.04634 1.86559 1.09627 1.22963 1.90586 1.20727 0.86910 0.99423 0.98249 1.21049 0.91742 0.97606 1.47180 0.92133 1.25891 0.97956 1.00287 0.94505 1.70050 1.08102 1.29976 1.48167 0.85239 0.78179 0.78460 0.78233 1.19069 1.19800 1.19789 1.20385 0.91509 0.98579 1.03117 0.82744 0.81476 0.82950 0.89817 0.89807 0.90581 0.90573 0.89458 0.89462 0.96464 0.96466 0.92070 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.58 18.54 19.00 0.35 -10.23 16 2 C 0.28 4.98 15.33 88.33 1.35 6.33 16 3 C 0.00 -0.03 5.73 -21.38 -0.12 -0.15 16 4 C -0.10 -0.90 9.75 22.55 0.22 -0.68 16 5 C -0.07 -0.53 10.03 22.22 0.22 -0.31 16 6 C -0.18 -1.91 9.03 22.42 0.20 -1.70 16 7 C 0.12 1.81 6.68 22.47 0.15 1.96 16 8 O -0.33 -6.22 10.13 -92.56 -0.94 -7.16 16 9 C 0.07 1.11 4.74 71.98 0.34 1.45 16 10 C -0.09 -2.06 5.59 30.59 0.17 -1.89 16 11 C -0.07 -2.05 5.94 71.98 0.43 -1.62 16 12 S -0.32 -13.51 21.66 -56.49 -1.22 -14.73 16 13 C 0.09 4.88 5.70 71.24 0.41 5.28 16 14 C -0.54 -30.33 9.13 25.60 0.23 -30.10 16 15 H 0.06 3.43 7.71 -2.91 -0.02 3.41 16 16 C 0.01 0.80 5.46 84.65 0.46 1.26 16 17 N -0.92 -53.28 13.29 21.45 0.28 -52.99 16 18 Si 0.98 43.12 29.54 68.60 2.03 45.15 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 22 C -0.11 -1.75 9.69 22.64 0.22 -1.53 16 23 H 0.15 0.71 8.06 -2.91 -0.02 0.68 16 24 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 25 H 0.15 1.16 6.28 -2.91 -0.02 1.14 16 26 H 0.08 1.09 7.67 -2.39 -0.02 1.07 16 27 H 0.08 1.09 7.64 -2.39 -0.02 1.07 16 28 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -66.87 327.90 5.88 -61.00 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: 1.09 Total: 0.66 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 4.29 Total: -21.71 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: 0.64 Total: -63.22 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.94 Total: -7.16 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -13.51 SS G_CDS: -1.22 Total: -14.73 kcal Total: -66.87 5.88 -61.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013235.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.627 kcal (2) G-P(sol) polarization free energy of solvation -66.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds