Wall clock time and date at job start Mon Mar 30 2020 01:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00349 * 2 1 4 4 H 1.48496 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46857 * 299.99475 * 3 2 1 6 6 H 1.48501 * 109.47241 * 59.99333 * 3 2 1 7 7 C 1.38735 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99573 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.76194 * 100.00177 * 185.11764 * 9 7 2 11 11 C 1.39223 * 120.02078 * 265.25662 * 10 9 7 12 12 C 1.38136 * 120.20068 * 179.69570 * 11 10 9 13 13 C 1.38083 * 120.24270 * 0.59899 * 12 11 10 14 14 C 1.39629 * 120.03871 * 359.67840 * 13 12 11 15 15 C 1.47867 * 120.09965 * 180.02562 * 14 13 12 16 16 O 1.21554 * 120.00163 * 180.02562 * 15 14 13 17 17 N 1.34774 * 120.00283 * 0.02562 * 15 14 13 18 18 C 1.46498 * 120.00552 * 180.02562 * 17 15 14 19 19 C 1.53781 * 113.61393 * 254.14099 * 18 17 15 20 20 C 1.53947 * 87.01784 * 220.04400 * 19 18 17 21 21 C 1.53775 * 113.61632 * 156.53161 * 18 17 15 22 22 C 1.38839 * 120.02036 * 85.52685 * 10 9 7 23 23 H 0.97003 * 119.99827 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.90035 * 359.97438 * 11 10 9 25 25 H 1.08002 * 119.87655 * 180.27610 * 12 11 10 26 26 H 1.08002 * 119.97631 * 179.70106 * 13 12 11 27 27 H 0.97004 * 119.99801 * 0.02562 * 17 15 14 28 28 H 1.09003 * 112.84347 * 25.33219 * 18 17 15 29 29 H 1.08997 * 113.61699 * 334.56581 * 19 18 17 30 30 H 1.09007 * 113.61680 * 105.46584 * 19 18 17 31 31 H 1.09005 * 113.54132 * 270.80919 * 20 19 18 32 32 H 1.08998 * 113.66725 * 139.93832 * 20 19 18 33 33 H 1.08996 * 113.61296 * 254.52883 * 21 18 17 34 34 H 1.08999 * 113.61419 * 25.35374 * 21 18 17 35 35 H 1.07999 * 120.11940 * 0.02576 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8917 2.3964 -1.2126 6 1 1.8915 2.3966 1.2124 7 6 2.0098 -1.2015 0.0005 8 1 3.0898 -1.2014 0.0010 9 16 1.1288 -2.7274 0.0005 10 6 2.4725 -3.8565 0.1561 11 6 3.0329 -4.4331 -0.9805 12 6 4.0905 -5.3140 -0.8633 13 6 4.5909 -5.6381 0.3822 14 6 4.0327 -5.0701 1.5292 15 6 4.5679 -5.4158 2.8636 16 8 4.0804 -4.9207 3.8609 17 7 5.5963 -6.2798 2.9741 18 6 6.1263 -6.6228 4.2961 19 6 7.4834 -5.9686 4.6044 20 6 7.8883 -7.3037 5.2552 21 6 6.8555 -7.9760 4.3354 22 6 2.9693 -4.1761 1.4125 23 1 -0.4850 0.8401 -0.0004 24 1 2.6425 -4.1875 -1.9570 25 1 4.5242 -5.7548 -1.7487 26 1 5.4148 -6.3310 0.4692 27 1 5.9857 -6.6747 2.1782 28 1 5.3913 -6.4995 5.0916 29 1 8.0624 -5.7236 3.7140 30 1 7.4186 -5.1399 5.3096 31 1 7.6363 -7.3661 6.3139 32 1 8.9167 -7.5983 5.0460 33 1 6.2845 -8.7657 4.8237 34 1 7.2613 -8.2815 3.3710 35 1 2.5334 -3.7340 2.2962 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430707970.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:32 Heat of formation + Delta-G solvation = -0.132746 kcal Electronic energy + Delta-G solvation = -18075.561838 eV Core-core repulsion = 15164.857516 eV Total energy + Delta-G solvation = -2910.704321 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.24513 -38.69220 -37.44131 -33.55690 -32.50356 -30.76240 -30.46416 -25.93499 -25.57756 -25.48992 -23.17325 -22.17521 -20.48279 -19.99718 -18.19592 -17.34663 -16.74396 -15.82387 -15.42611 -15.17136 -14.84824 -14.74896 -14.31125 -13.95092 -13.41698 -13.14659 -12.85206 -12.79119 -12.64827 -12.20445 -11.65072 -11.58803 -11.14842 -11.11907 -11.09593 -10.91325 -10.72143 -10.67484 -9.95304 -9.73236 -9.16517 -9.11445 -9.00355 -8.58139 -8.02305 -6.70827 -6.28319 -4.02144 1.16691 1.66952 3.03503 3.14091 3.20231 3.23959 3.29574 3.48328 4.08224 4.24694 4.26030 4.37926 4.60322 4.65470 4.85322 5.07291 5.08994 5.23810 5.35583 5.39987 5.44356 5.48036 5.56952 5.73041 5.74278 5.76976 5.87818 5.97616 6.06143 6.25575 6.45750 6.59776 6.63773 6.93720 7.19550 7.51889 7.58301 8.30936 8.33435 9.17684 10.78484 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023531 B = 0.003950 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.632941 B = 7086.866231 C = 7673.690855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.073 3.927 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.519 4.519 8 H 0.076 0.924 9 S -0.035 6.035 10 C -0.106 4.106 11 C -0.055 4.055 12 C -0.141 4.141 13 C -0.090 4.090 14 C -0.155 4.155 15 C 0.564 3.436 16 O -0.535 6.535 17 N -0.723 5.723 18 C 0.123 3.877 19 C -0.155 4.155 20 C -0.139 4.139 21 C -0.147 4.147 22 C -0.019 4.019 23 H 0.269 0.731 24 H 0.131 0.869 25 H 0.123 0.877 26 H 0.116 0.884 27 H 0.399 0.601 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.312 -15.226 3.735 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.136 4.136 3 Si 0.747 3.253 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.667 4.667 8 H 0.094 0.906 9 S 0.199 5.801 10 C -0.217 4.217 11 C -0.077 4.077 12 C -0.161 4.161 13 C -0.109 4.109 14 C -0.160 4.160 15 C 0.352 3.648 16 O -0.412 6.412 17 N -0.375 5.375 18 C 0.018 3.982 19 C -0.194 4.194 20 C -0.177 4.177 21 C -0.185 4.185 22 C -0.041 4.041 23 H 0.079 0.921 24 H 0.149 0.851 25 H 0.141 0.859 26 H 0.134 0.866 27 H 0.234 0.766 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.596 -14.903 4.379 19.999 hybrid contribution 2.132 0.999 -0.313 2.375 sum 14.728 -13.904 4.066 20.659 Atomic orbital electron populations 1.69997 1.05904 1.27563 1.47070 1.25007 0.95130 0.99125 0.94339 0.86065 0.79728 0.81539 0.77956 1.19507 1.20470 1.20421 1.22883 0.94915 0.90166 1.58689 0.90570 1.83602 1.04324 0.97179 1.94991 1.22854 1.02985 1.02021 0.93851 1.21959 0.93340 0.93506 0.98850 1.21055 0.98173 0.99968 0.96907 1.21128 0.98776 0.98704 0.92319 1.19884 1.00737 1.03180 0.92187 1.18469 0.78979 0.78161 0.89147 1.90765 1.59387 1.52458 1.38586 1.45917 1.35546 1.47099 1.08904 1.22546 0.94483 0.94892 0.86267 1.23480 0.97043 0.97629 1.01256 1.22712 0.99167 0.96519 0.99302 1.23318 0.97864 0.96733 1.00626 1.21957 0.91949 0.92005 0.98174 0.92107 0.85066 0.85862 0.86564 0.76570 0.86773 0.89796 0.90902 0.89808 0.90933 0.90737 0.89700 0.84317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.57 13.22 55.49 0.73 -24.83 16 2 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 3 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.76 9.46 30.92 0.29 -14.47 16 8 H 0.08 2.15 7.79 -52.49 -0.41 1.75 16 9 S -0.04 -0.92 21.40 -107.50 -2.30 -3.22 16 10 C -0.11 -2.30 5.45 -38.99 -0.21 -2.51 16 11 C -0.06 -1.00 9.79 -39.25 -0.38 -1.38 16 12 C -0.14 -2.03 10.02 -39.68 -0.40 -2.42 16 13 C -0.09 -1.24 9.54 -39.12 -0.37 -1.61 16 14 C -0.16 -2.64 5.87 -105.00 -0.62 -3.26 16 15 C 0.56 9.26 7.77 -12.32 -0.10 9.16 16 16 O -0.53 -10.79 15.96 5.32 0.08 -10.71 16 17 N -0.72 -8.47 5.31 -53.96 -0.29 -8.76 16 18 C 0.12 1.27 4.21 -67.12 -0.28 0.99 16 19 C -0.16 -1.41 7.89 -25.83 -0.20 -1.61 16 20 C -0.14 -0.96 8.09 -25.83 -0.21 -1.17 16 21 C -0.15 -1.06 7.83 -25.92 -0.20 -1.26 16 22 C -0.02 -0.40 9.34 -38.92 -0.36 -0.76 16 23 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 25 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 26 H 0.12 1.11 6.40 -52.49 -0.34 0.77 16 27 H 0.40 3.54 6.74 -40.82 -0.28 3.26 16 28 H 0.11 1.38 7.50 -51.93 -0.39 0.99 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.52 8.11 -51.93 -0.42 0.09 16 35 H 0.14 3.11 7.65 -52.49 -0.40 2.70 16 LS Contribution 316.86 15.07 4.78 4.78 Total: -1.00 -32.76 316.86 -9.49 -42.25 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -4.33 Total: 2.27 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -3.15 Total: -18.33 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.45 Total: -33.60 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.76 -9.49 -42.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430707970.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.120 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds