Wall clock time and date at job start Mon Mar 30 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00349 * 2 1 4 4 H 1.48496 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46857 * 299.99475 * 3 2 1 6 6 H 1.48501 * 109.47241 * 59.99333 * 3 2 1 7 7 C 1.38735 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99573 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.76194 * 100.00177 * 185.11764 * 9 7 2 11 11 C 1.39223 * 120.02078 * 265.25662 * 10 9 7 12 12 C 1.38136 * 120.20068 * 179.69570 * 11 10 9 13 13 C 1.38083 * 120.24270 * 0.59899 * 12 11 10 14 14 C 1.39629 * 120.03871 * 359.67840 * 13 12 11 15 15 C 1.47867 * 120.09965 * 180.02562 * 14 13 12 16 16 O 1.21554 * 120.00163 * 180.02562 * 15 14 13 17 17 N 1.34774 * 120.00283 * 0.02562 * 15 14 13 18 18 C 1.46498 * 120.00552 * 180.02562 * 17 15 14 19 19 C 1.53781 * 113.61393 * 254.14099 * 18 17 15 20 20 C 1.53947 * 87.01784 * 220.04400 * 19 18 17 21 21 C 1.53775 * 113.61632 * 156.53161 * 18 17 15 22 22 C 1.38839 * 120.02036 * 85.52685 * 10 9 7 23 23 H 0.97003 * 119.99827 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.90035 * 359.97438 * 11 10 9 25 25 H 1.08002 * 119.87655 * 180.27610 * 12 11 10 26 26 H 1.08002 * 119.97631 * 179.70106 * 13 12 11 27 27 H 0.97004 * 119.99801 * 0.02562 * 17 15 14 28 28 H 1.09003 * 112.84347 * 25.33219 * 18 17 15 29 29 H 1.08997 * 113.61699 * 334.56581 * 19 18 17 30 30 H 1.09007 * 113.61680 * 105.46584 * 19 18 17 31 31 H 1.09005 * 113.54132 * 270.80919 * 20 19 18 32 32 H 1.08998 * 113.66725 * 139.93832 * 20 19 18 33 33 H 1.08996 * 113.61296 * 254.52883 * 21 18 17 34 34 H 1.08999 * 113.61419 * 25.35374 * 21 18 17 35 35 H 1.07999 * 120.11940 * 0.02576 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8917 2.3964 -1.2126 6 1 1.8915 2.3966 1.2124 7 6 2.0098 -1.2015 0.0005 8 1 3.0898 -1.2014 0.0010 9 16 1.1288 -2.7274 0.0005 10 6 2.4725 -3.8565 0.1561 11 6 3.0329 -4.4331 -0.9805 12 6 4.0905 -5.3140 -0.8633 13 6 4.5909 -5.6381 0.3822 14 6 4.0327 -5.0701 1.5292 15 6 4.5679 -5.4158 2.8636 16 8 4.0804 -4.9207 3.8609 17 7 5.5963 -6.2798 2.9741 18 6 6.1263 -6.6228 4.2961 19 6 7.4834 -5.9686 4.6044 20 6 7.8883 -7.3037 5.2552 21 6 6.8555 -7.9760 4.3354 22 6 2.9693 -4.1761 1.4125 23 1 -0.4850 0.8401 -0.0004 24 1 2.6425 -4.1875 -1.9570 25 1 4.5242 -5.7548 -1.7487 26 1 5.4148 -6.3310 0.4692 27 1 5.9857 -6.6747 2.1782 28 1 5.3913 -6.4995 5.0916 29 1 8.0624 -5.7236 3.7140 30 1 7.4186 -5.1399 5.3096 31 1 7.6363 -7.3661 6.3139 32 1 8.9167 -7.5983 5.0460 33 1 6.2845 -8.7657 4.8237 34 1 7.2613 -8.2815 3.3710 35 1 2.5334 -3.7340 2.2962 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430707970.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:31 Heat of formation + Delta-G solvation = -21.213772 kcal Electronic energy + Delta-G solvation = -18076.475980 eV Core-core repulsion = 15164.857516 eV Total energy + Delta-G solvation = -2911.618463 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.39756 -39.73099 -38.66545 -34.70189 -34.66618 -32.09323 -31.82969 -27.76297 -26.59955 -26.43082 -24.36341 -23.51972 -21.70708 -20.84640 -19.90979 -18.86599 -17.77600 -17.05647 -16.95059 -16.64134 -16.30073 -15.95629 -15.62803 -15.39797 -14.84948 -14.62392 -13.96640 -13.79615 -13.41885 -13.32250 -13.25768 -13.04887 -12.99132 -12.66349 -12.41089 -12.27501 -11.74706 -11.57718 -11.37393 -11.26630 -11.07892 -10.75490 -10.19564 -9.88401 -9.70287 -8.81985 -8.40752 -6.20917 -0.19248 0.24627 1.28539 1.35460 1.45557 1.64023 1.78272 2.10688 2.23652 2.79168 2.92270 3.40319 3.56077 3.67886 3.73107 3.93479 3.95464 3.97785 4.03724 4.34916 4.47128 4.61614 4.72003 4.79662 4.83139 4.91485 5.05550 5.07091 5.12222 5.21887 5.27550 5.32119 5.37329 5.50012 5.60301 5.86189 6.14484 6.48793 6.99611 7.14817 8.66640 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023531 B = 0.003950 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.632941 B = 7086.866231 C = 7673.690855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.019 3.981 3 Si 0.993 3.007 4 H -0.266 1.266 5 H -0.264 1.264 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.067 0.933 9 S -0.096 6.096 10 C -0.129 4.129 11 C -0.063 4.063 12 C -0.120 4.120 13 C -0.062 4.062 14 C -0.158 4.158 15 C 0.560 3.440 16 O -0.586 6.586 17 N -0.697 5.697 18 C 0.103 3.897 19 C -0.158 4.158 20 C -0.129 4.129 21 C -0.130 4.130 22 C -0.047 4.047 23 H 0.274 0.726 24 H 0.136 0.864 25 H 0.177 0.823 26 H 0.176 0.824 27 H 0.417 0.583 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.183 -17.462 2.458 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.191 1.191 5 H -0.189 1.189 6 H -0.198 1.198 7 C -0.683 4.683 8 H 0.085 0.915 9 S 0.138 5.862 10 C -0.240 4.240 11 C -0.084 4.084 12 C -0.139 4.139 13 C -0.080 4.080 14 C -0.163 4.163 15 C 0.348 3.652 16 O -0.467 6.467 17 N -0.349 5.349 18 C -0.001 4.001 19 C -0.196 4.196 20 C -0.167 4.167 21 C -0.168 4.168 22 C -0.069 4.069 23 H 0.083 0.917 24 H 0.154 0.846 25 H 0.195 0.805 26 H 0.193 0.807 27 H 0.256 0.744 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.126 0.874 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 16.503 -17.191 3.083 24.029 hybrid contribution 1.030 1.517 0.109 1.837 sum 17.533 -15.673 3.191 23.733 Atomic orbital electron populations 1.70114 1.07511 1.28761 1.47837 1.26021 0.96079 1.02897 0.93597 0.84986 0.78287 0.76669 0.78564 1.19055 1.18879 1.19757 1.23096 0.94616 0.91630 1.59002 0.91523 1.83472 1.08724 0.98631 1.95343 1.22498 1.03076 1.02768 0.95680 1.22086 0.94529 0.94200 0.97601 1.21572 0.95744 0.97547 0.99074 1.21725 0.98588 0.97270 0.90464 1.19997 0.99716 1.02510 0.94114 1.18493 0.79794 0.78656 0.88218 1.90746 1.61317 1.54684 1.40000 1.45757 1.33555 1.45044 1.10498 1.22810 0.94487 0.98072 0.84780 1.23518 0.96227 0.98316 1.01587 1.22692 1.00206 0.94501 0.99289 1.23302 0.96916 0.94727 1.01888 1.21632 0.94276 0.94440 0.96580 0.91666 0.84644 0.80517 0.80725 0.74393 0.89451 0.88812 0.92654 0.89695 0.88963 0.90098 0.87387 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.24 13.22 21.64 0.29 -54.95 16 2 C 0.02 1.12 5.49 84.84 0.47 1.59 16 3 Si 0.99 45.20 29.55 68.60 2.03 47.22 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.54 -31.99 9.46 67.94 0.64 -31.34 16 8 H 0.07 3.95 7.79 -2.91 -0.02 3.92 16 9 S -0.10 -5.36 21.40 -56.49 -1.21 -6.57 16 10 C -0.13 -5.80 5.45 22.65 0.12 -5.67 16 11 C -0.06 -2.21 9.79 22.48 0.22 -1.99 16 12 C -0.12 -2.88 10.02 22.21 0.22 -2.66 16 13 C -0.06 -1.41 9.54 22.57 0.22 -1.20 16 14 C -0.16 -5.26 5.87 -20.11 -0.12 -5.38 16 15 C 0.56 18.19 7.77 86.79 0.67 18.86 16 16 O -0.59 -24.92 15.96 -3.89 -0.06 -24.98 16 17 N -0.70 -14.51 5.31 -442.90 -2.35 -16.86 16 18 C 0.10 1.95 4.21 45.52 0.19 2.15 16 19 C -0.16 -2.54 7.89 31.18 0.25 -2.29 16 20 C -0.13 -1.36 8.09 31.18 0.25 -1.11 16 21 C -0.13 -1.38 7.83 31.12 0.24 -1.14 16 22 C -0.05 -2.06 9.34 22.70 0.21 -1.85 16 23 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 24 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 25 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 26 H 0.18 1.97 6.40 -2.91 -0.02 1.95 16 27 H 0.42 5.27 6.74 -92.71 -0.62 4.64 16 28 H 0.09 2.16 7.50 -2.39 -0.02 2.14 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.11 0.70 8.11 -2.39 -0.02 0.68 16 35 H 0.10 5.01 7.65 -2.91 -0.02 4.99 16 Total: -1.00 -79.28 316.86 2.76 -76.52 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.48 Total: 11.65 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 3.59 Total: -32.03 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -2.07 Total: -71.81 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.06 Total: -24.98 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -1.21 Total: -6.57 kcal Total: -79.28 2.76 -76.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430707970.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.307 kcal (2) G-P(sol) polarization free energy of solvation -79.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds