Wall clock time and date at job start Mon Mar 30 2020 01:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00056 * 2 1 4 4 H 1.48500 * 109.47251 * 269.99814 * 3 2 1 5 5 H 1.48497 * 109.47511 * 30.00235 * 3 2 1 6 6 H 1.48510 * 109.47387 * 150.00086 * 3 2 1 7 7 C 1.37875 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00258 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00234 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.46820 * 299.99896 * 9 7 2 11 11 O 1.42905 * 109.47203 * 59.99588 * 9 7 2 12 12 C 1.52995 * 109.47523 * 179.97438 * 9 7 2 13 13 N 1.46500 * 109.47335 * 180.02562 * 12 9 7 14 14 C 1.35488 * 127.81989 * 275.63569 * 13 12 9 15 15 O 1.21608 * 126.87273 * 359.97438 * 14 13 12 16 16 O 1.34234 * 106.24979 * 180.23629 * 14 13 12 17 17 N 1.21004 * 110.89481 * 359.75505 * 16 14 13 18 18 C 1.29921 * 111.54693 * 0.02562 * 17 16 14 19 19 C 1.48083 * 126.52338 * 179.97438 * 18 17 16 20 20 C 1.39888 * 120.54739 * 215.61354 * 19 18 17 21 21 C 1.38390 * 118.30198 * 180.02562 * 20 19 18 22 22 C 1.38331 * 119.29411 * 0.02562 * 21 20 19 23 23 N 1.31907 * 121.05043 * 359.97438 * 22 21 20 24 24 C 1.31717 * 121.86758 * 0.02562 * 23 22 21 25 25 H 0.97003 * 120.00069 * 359.97438 * 1 2 3 26 26 H 0.96696 * 113.99537 * 60.00080 * 11 9 7 27 27 H 1.09003 * 109.47164 * 59.99985 * 12 9 7 28 28 H 1.08995 * 109.47393 * 300.00288 * 12 9 7 29 29 H 1.08004 * 120.84996 * 359.75267 * 20 19 18 30 30 H 1.08006 * 120.35349 * 179.97438 * 21 20 19 31 31 H 1.08000 * 119.47363 * 179.97438 * 22 21 20 32 32 H 1.08002 * 119.71283 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8904 11 8 0.4298 -2.5751 -1.1665 12 6 2.2451 -3.6621 0.0005 13 7 1.5126 -4.9308 -0.0001 14 6 1.0058 -5.5981 1.0647 15 8 1.0666 -5.2630 2.2321 16 8 0.4284 -6.7059 0.5736 17 7 0.5372 -6.7517 -0.6307 18 6 1.1786 -5.7200 -1.0914 19 6 1.4972 -5.4420 -2.5106 20 6 2.7020 -4.8233 -2.8607 21 6 2.9520 -4.5850 -4.2009 22 6 2.0113 -4.9622 -5.1424 23 7 0.8837 -5.5441 -4.7822 24 6 0.6011 -5.7916 -3.5197 25 1 -0.4850 0.8401 0.0004 26 1 0.9222 -2.5299 -1.9975 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8894 29 1 3.4168 -4.5348 -2.1042 30 1 3.8714 -4.1089 -4.5083 31 1 2.2033 -4.7773 -6.1890 32 1 -0.3330 -6.2695 -3.2639 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436472809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:16 Heat of formation + Delta-G solvation = 13.043833 kcal Electronic energy + Delta-G solvation = -21585.833205 eV Core-core repulsion = 18129.407048 eV Total energy + Delta-G solvation = -3456.426157 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.98368 -40.25528 -38.30483 -37.03504 -35.38061 -32.89856 -32.38527 -32.32751 -30.57932 -29.32449 -26.16690 -24.99620 -23.87313 -23.10789 -21.86904 -21.07783 -18.18523 -18.04804 -17.57420 -17.05754 -16.52981 -16.02446 -15.82450 -15.03086 -14.83802 -14.71379 -14.16476 -14.05734 -13.91064 -13.52960 -13.29023 -13.06737 -12.63632 -12.13800 -11.93701 -11.42186 -11.28699 -11.05821 -11.00570 -10.37937 -10.31206 -10.13532 -9.75544 -9.57078 -9.19191 -8.82820 -8.71469 -8.26834 -6.21885 -4.44569 0.51795 1.05605 1.91561 2.14184 2.50467 3.15152 3.23629 3.25056 3.41398 3.61146 4.08975 4.22214 4.32098 4.55877 4.61498 4.70301 4.95011 5.04730 5.07055 5.23285 5.54939 5.63587 5.80626 5.85931 5.93048 5.96352 6.14232 6.35457 6.43167 7.36465 7.56565 7.70752 7.74502 7.84804 8.33658 8.56199 9.04409 9.32496 10.82309 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.014784 B = 0.007236 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.461145 B = 3868.439266 C = 5212.384981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.084 3.916 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.580 4.580 8 H 0.061 0.939 9 C 0.217 3.783 10 H 0.067 0.933 11 O -0.555 6.555 12 C 0.095 3.905 13 N -0.530 5.530 14 C 0.558 3.442 15 O -0.480 6.480 16 O -0.008 6.008 17 N -0.340 5.340 18 C 0.285 3.715 19 C -0.069 4.069 20 C -0.048 4.048 21 C -0.167 4.167 22 C 0.115 3.885 23 N -0.481 5.481 24 C 0.152 3.848 25 H 0.264 0.736 26 H 0.341 0.659 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.161 0.839 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.836 -9.105 -9.081 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.125 4.125 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.618 4.618 8 H 0.079 0.921 9 C 0.159 3.841 10 H 0.085 0.915 11 O -0.357 6.357 12 C -0.023 4.023 13 N -0.266 5.266 14 C 0.310 3.690 15 O -0.360 6.360 16 O -0.051 6.051 17 N -0.076 5.076 18 C 0.016 3.984 19 C -0.073 4.073 20 C -0.075 4.075 21 C -0.187 4.187 22 C -0.042 4.042 23 N -0.189 5.189 24 C -0.007 4.007 25 H 0.074 0.926 26 H 0.185 0.815 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.179 0.821 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.106 -10.012 -8.758 14.248 hybrid contribution 1.874 2.045 0.703 2.862 sum 6.980 -7.967 -8.055 13.307 Atomic orbital electron populations 1.70072 1.06071 1.27007 1.45341 1.25018 0.94747 0.99381 0.93319 0.86558 0.79926 0.82948 0.78307 1.20360 1.20906 1.19624 1.21357 0.93165 0.90515 1.56799 0.92052 1.19816 0.88415 0.88791 0.87077 0.91525 1.86665 1.37967 1.96114 1.14941 1.23322 0.96060 0.78819 1.04090 1.47203 1.50588 1.22868 1.05930 1.20551 0.80755 0.80953 0.86736 1.91153 1.61885 1.69682 1.13305 1.85507 1.65005 1.39466 1.15150 1.74175 1.21009 1.20249 0.92134 1.22312 0.96941 0.88537 0.90614 1.18325 0.97256 1.04383 0.87321 1.21778 0.95109 0.93240 0.97354 1.22086 1.01826 1.01850 0.92890 1.22990 0.88619 0.92052 1.00534 1.67797 1.19640 1.12790 1.18638 1.22885 0.97876 0.93273 0.86661 0.92571 0.81534 0.88366 0.88988 0.83908 0.83765 0.82143 0.81773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.13 12.84 55.43 0.71 -23.42 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 3 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.58 -14.52 8.76 -34.44 -0.30 -14.82 16 8 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.22 5.10 3.10 -27.88 -0.09 5.01 16 10 H 0.07 1.85 8.14 -51.92 -0.42 1.43 16 11 O -0.55 -13.15 12.59 -35.23 -0.44 -13.59 16 12 C 0.10 1.72 5.68 -4.04 -0.02 1.70 16 13 N -0.53 -9.50 2.73 -119.33 -0.33 -9.83 16 14 C 0.56 11.02 9.34 54.34 0.51 11.52 16 15 O -0.48 -10.77 18.00 -18.89 -0.34 -11.11 16 16 O -0.01 -0.15 11.25 -7.53 -0.08 -0.23 16 17 N -0.34 -5.66 12.04 32.10 0.39 -5.27 16 18 C 0.28 4.56 7.56 -153.62 -1.16 3.39 16 19 C -0.07 -0.92 5.82 -104.80 -0.61 -1.53 16 20 C -0.05 -0.53 8.91 -38.91 -0.35 -0.88 16 21 C -0.17 -1.52 10.10 -39.49 -0.40 -1.92 16 22 C 0.12 1.13 11.17 -17.49 -0.20 0.93 16 23 N -0.48 -5.97 10.35 -12.94 -0.13 -6.10 16 24 C 0.15 1.98 10.93 -17.16 -0.19 1.79 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.34 7.12 9.04 45.56 0.41 7.53 16 27 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 28 H 0.09 1.38 4.73 -51.93 -0.25 1.13 16 29 H 0.14 1.46 5.86 -52.48 -0.31 1.15 16 30 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 293.56 15.07 4.42 4.42 Total: -1.00 -31.46 293.56 -5.52 -36.99 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -1.80 Total: 5.95 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -2.90 Total: 7.30 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.64 Total: -44.62 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.87 Total: -24.93 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.46 -5.52 -36.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436472809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.029 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds