Wall clock time and date at job start Mon Mar 30 2020 01:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47110 * 70.60827 * 3 2 1 5 5 C 1.36881 * 119.99962 * 95.62941 * 4 3 2 6 6 H 1.08002 * 120.00396 * 231.26551 * 5 4 3 7 7 C 1.39006 * 120.00016 * 51.54068 * 5 4 3 8 8 N 1.31400 * 119.99915 * 198.65993 * 7 5 4 9 9 Si 1.86800 * 119.99882 * 18.66265 * 7 5 4 10 10 H 1.48508 * 109.47173 * 91.59171 * 9 7 5 11 11 H 1.48507 * 109.47079 * 211.59027 * 9 7 5 12 12 H 1.48498 * 109.47396 * 331.59378 * 9 7 5 13 13 C 1.34780 * 120.00097 * 275.62690 * 4 3 2 14 14 O 1.21741 * 119.99907 * 355.41024 * 13 4 3 15 15 C 1.46459 * 119.99981 * 175.40685 * 13 4 3 16 16 C 1.36764 * 125.46270 * 184.77347 * 15 13 4 17 17 C 1.37442 * 113.27714 * 179.97438 * 16 15 13 18 18 C 1.50709 * 122.44355 * 180.02562 * 17 16 15 19 19 C 1.52994 * 109.47244 * 264.97893 * 18 17 16 20 20 C 1.33847 * 115.11214 * 0.02562 * 17 16 15 21 21 C 1.50697 * 124.51727 * 179.97438 * 20 17 16 22 22 S 1.70619 * 110.96729 * 359.75649 * 20 17 16 23 23 H 4.40640 * 5.51397 * 180.02562 * 4 1 2 24 24 H 1.09005 * 109.46723 * 310.60880 * 3 2 1 25 25 H 1.08995 * 109.46875 * 190.61007 * 3 2 1 26 26 H 0.97004 * 119.99685 * 185.00409 * 8 7 5 27 27 H 1.07998 * 123.35818 * 359.95808 * 16 15 13 28 28 H 1.08999 * 109.46999 * 24.98583 * 18 17 16 29 29 H 1.09004 * 109.46483 * 144.97634 * 18 17 16 30 30 H 1.08994 * 109.47274 * 300.00051 * 19 18 17 31 31 H 1.08998 * 109.47189 * 60.00622 * 19 18 17 32 32 H 1.09007 * 109.46957 * 179.97438 * 19 18 17 33 33 H 1.08998 * 109.47401 * 89.99364 * 21 20 17 34 34 H 1.09001 * 109.47146 * 209.99398 * 21 20 17 35 35 H 1.08997 * 109.47247 * 329.99493 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.4577 -1.3028 5 6 3.4719 0.4539 -2.2666 6 1 3.0626 0.3639 -3.2620 7 6 4.3459 1.4921 -1.9658 8 7 4.3928 2.5555 -2.7363 9 14 5.4538 1.3755 -0.4664 10 1 6.7531 0.7713 -0.8566 11 1 5.6857 2.7349 0.0847 12 1 4.8036 0.5276 0.5649 13 6 3.2519 -1.7770 -1.5525 14 8 3.0322 -2.5855 -0.6692 15 6 3.6436 -2.2379 -2.8863 16 6 3.7069 -3.5437 -3.2878 17 6 4.1045 -3.6914 -4.5951 18 6 4.2435 -5.0415 -5.2503 19 6 5.6977 -5.5072 -5.1551 20 6 4.3592 -2.5487 -5.2439 21 6 4.8081 -2.4639 -6.6799 22 16 4.1020 -1.2007 -4.2302 23 1 -1.0499 0.0001 -0.0002 24 1 3.0096 -0.6681 0.7802 25 1 3.0089 1.0109 0.1892 26 1 5.0523 3.2469 -2.5690 27 1 3.4684 -4.3758 -2.6419 28 1 3.5981 -5.7592 -4.7440 29 1 3.9533 -4.9682 -6.2984 30 1 6.3430 -4.7895 -5.6614 31 1 5.9879 -5.5805 -4.1070 32 1 5.7982 -6.4839 -5.6286 33 1 3.9358 -2.3976 -7.3301 34 1 5.4298 -1.5787 -6.8146 35 1 5.3836 -3.3541 -6.9339 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490985501.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:59 Heat of formation + Delta-G solvation = 45.790203 kcal Electronic energy + Delta-G solvation = -19082.128015 eV Core-core repulsion = 16173.415063 eV Total energy + Delta-G solvation = -2908.712953 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.05213 -37.88084 -35.24185 -32.94314 -32.33686 -31.75564 -30.96278 -27.72062 -26.01358 -24.87355 -23.39059 -22.11084 -19.42599 -18.76039 -17.72411 -17.23943 -16.42787 -15.76342 -15.03187 -14.66316 -14.39956 -13.95191 -13.71382 -13.54673 -13.11195 -12.88551 -12.72075 -12.59467 -12.25917 -12.09795 -11.82862 -11.55470 -11.18338 -11.11922 -10.95978 -10.78938 -10.67658 -10.30806 -9.95889 -9.66822 -9.47163 -9.19367 -8.85389 -8.02392 -7.66642 -7.52650 -6.77206 -4.53780 1.41002 2.55082 2.91939 3.05745 3.08139 3.11452 3.16042 3.28530 3.49419 3.95578 4.13583 4.48366 4.69965 5.09337 5.29257 5.29337 5.49138 5.62863 5.67548 5.84154 5.86459 6.01026 6.04916 6.09299 6.14827 6.18987 6.26847 6.32389 6.46945 6.51261 6.73503 7.06372 7.16352 7.21325 7.81421 7.89538 8.23663 8.66689 9.05047 9.43535 10.29156 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.018346 B = 0.007030 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.887685 B = 3981.859697 C = 4665.202569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.166 4.166 3 C 0.214 3.786 4 N -0.464 5.464 5 C -0.354 4.354 6 H 0.112 0.888 7 C 0.088 3.912 8 N -0.832 5.832 9 Si 0.862 3.138 10 H -0.267 1.267 11 H -0.276 1.276 12 H -0.248 1.248 13 C 0.562 3.438 14 O -0.581 6.581 15 C -0.242 4.242 16 C -0.084 4.084 17 C -0.131 4.131 18 C -0.060 4.060 19 C -0.144 4.144 20 C -0.289 4.289 21 C -0.075 4.075 22 S 0.321 5.679 23 H 0.211 0.789 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.282 0.718 27 H 0.134 0.866 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 -5.934 -4.122 7.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.168 4.168 3 C 0.092 3.908 4 N -0.185 5.185 5 C -0.487 4.487 6 H 0.129 0.871 7 C -0.125 4.125 8 N -0.463 5.463 9 Si 0.685 3.315 10 H -0.192 1.192 11 H -0.201 1.201 12 H -0.172 1.172 13 C 0.352 3.648 14 O -0.466 6.466 15 C -0.363 4.363 16 C -0.118 4.118 17 C -0.143 4.143 18 C -0.099 4.099 19 C -0.202 4.202 20 C -0.407 4.407 21 C -0.133 4.133 22 S 0.597 5.403 23 H 0.228 0.772 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.093 0.907 27 H 0.152 0.848 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.267 -4.521 -3.982 6.156 hybrid contribution 0.231 -1.399 0.750 1.604 sum 1.498 -5.919 -3.231 6.908 Atomic orbital electron populations 1.24667 0.95657 1.03064 1.01392 1.23891 0.95061 0.98486 0.99336 1.18787 0.83212 1.00624 0.88210 1.43414 1.57624 1.04414 1.13067 1.18892 1.29621 1.07467 0.92683 0.87134 1.25521 0.95611 0.93583 0.97796 1.69774 1.31566 1.05801 1.39200 0.87129 0.82149 0.78663 0.83538 1.19221 1.20129 1.17219 1.17351 0.78747 0.82530 0.86140 1.90683 1.55288 1.54419 1.46160 1.24407 1.15124 0.97502 0.99294 1.20293 1.00970 0.95561 0.94954 1.18328 1.06760 0.95005 0.94196 1.20142 0.96825 0.93287 0.99676 1.21731 0.96503 1.00021 1.01932 1.25486 1.08756 1.03430 1.03033 1.20198 1.00565 1.02009 0.90521 1.84946 1.57139 1.01417 0.96795 0.77163 0.89037 0.88762 0.90740 0.84773 0.91840 0.91888 0.92792 0.92664 0.93187 0.91715 0.91920 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.29 19.25 29.55 0.57 -3.72 16 2 C -0.17 -3.57 13.62 -37.12 -0.51 -4.08 16 3 C 0.21 4.74 3.84 -6.83 -0.03 4.72 16 4 N -0.46 -11.20 1.86 -119.50 -0.22 -11.42 16 5 C -0.35 -8.72 7.25 -15.01 -0.11 -8.83 16 6 H 0.11 2.84 5.49 -30.91 -0.17 2.67 16 7 C 0.09 2.14 5.24 -17.45 -0.09 2.05 16 8 N -0.83 -20.85 13.95 55.50 0.77 -20.08 16 9 Si 0.86 18.64 26.58 -169.99 -4.52 14.13 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.25 -5.21 5.23 56.52 0.30 -4.92 16 13 C 0.56 13.80 7.53 -12.95 -0.10 13.70 16 14 O -0.58 -15.19 16.49 5.15 0.08 -15.11 16 15 C -0.24 -5.39 6.31 -36.81 -0.23 -5.62 16 16 C -0.08 -1.67 9.79 -40.40 -0.40 -2.07 16 17 C -0.13 -2.27 5.04 -106.45 -0.54 -2.81 16 18 C -0.06 -0.83 5.54 -27.88 -0.15 -0.98 16 19 C -0.14 -1.79 9.83 37.15 0.37 -1.42 16 20 C -0.29 -5.02 6.28 -35.85 -0.23 -5.24 16 21 C -0.07 -1.03 9.71 36.00 0.35 -0.68 16 22 S 0.32 6.49 18.27 -107.50 -1.96 4.52 16 23 H 0.21 2.95 7.80 -54.10 -0.42 2.53 16 24 H 0.09 1.99 7.37 -51.93 -0.38 1.60 16 25 H 0.09 2.00 5.25 -51.93 -0.27 1.73 16 26 H 0.28 6.56 8.32 -40.82 -0.34 6.22 16 27 H 0.13 2.59 8.06 -52.49 -0.42 2.17 16 28 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 29 H 0.06 0.79 7.46 -51.93 -0.39 0.40 16 30 H 0.05 0.67 7.24 -51.93 -0.38 0.29 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.78 6.39 -51.93 -0.33 0.45 16 LS Contribution 309.86 15.07 4.67 4.67 Total: -1.00 -28.03 309.86 -6.38 -34.42 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.12 Total: 3.86 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -1.09 Total: -14.98 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.55 Total: -31.50 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.08 Total: -15.11 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.52 Total: 14.13 kcal Atomic # 16 Polarization: 6.49 SS G_CDS: -1.96 Total: 4.52 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.03 -6.38 -34.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490985501.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.206 kcal (2) G-P(sol) polarization free energy of solvation -28.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds