Wall clock time and date at job start Mon Mar 30 2020 01:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47110 * 70.60827 * 3 2 1 5 5 C 1.36881 * 119.99962 * 95.62941 * 4 3 2 6 6 H 1.08002 * 120.00396 * 231.26551 * 5 4 3 7 7 C 1.39006 * 120.00016 * 51.54068 * 5 4 3 8 8 N 1.31400 * 119.99915 * 198.65993 * 7 5 4 9 9 Si 1.86800 * 119.99882 * 18.66265 * 7 5 4 10 10 H 1.48508 * 109.47173 * 91.59171 * 9 7 5 11 11 H 1.48507 * 109.47079 * 211.59027 * 9 7 5 12 12 H 1.48498 * 109.47396 * 331.59378 * 9 7 5 13 13 C 1.34780 * 120.00097 * 275.62690 * 4 3 2 14 14 O 1.21741 * 119.99907 * 355.41024 * 13 4 3 15 15 C 1.46459 * 119.99981 * 175.40685 * 13 4 3 16 16 C 1.36764 * 125.46270 * 184.77347 * 15 13 4 17 17 C 1.37442 * 113.27714 * 179.97438 * 16 15 13 18 18 C 1.50709 * 122.44355 * 180.02562 * 17 16 15 19 19 C 1.52994 * 109.47244 * 264.97893 * 18 17 16 20 20 C 1.33847 * 115.11214 * 0.02562 * 17 16 15 21 21 C 1.50697 * 124.51727 * 179.97438 * 20 17 16 22 22 S 1.70619 * 110.96729 * 359.75649 * 20 17 16 23 23 H 4.40640 * 5.51397 * 180.02562 * 4 1 2 24 24 H 1.09005 * 109.46723 * 310.60880 * 3 2 1 25 25 H 1.08995 * 109.46875 * 190.61007 * 3 2 1 26 26 H 0.97004 * 119.99685 * 185.00409 * 8 7 5 27 27 H 1.07998 * 123.35818 * 359.95808 * 16 15 13 28 28 H 1.08999 * 109.46999 * 24.98583 * 18 17 16 29 29 H 1.09004 * 109.46483 * 144.97634 * 18 17 16 30 30 H 1.08994 * 109.47274 * 300.00051 * 19 18 17 31 31 H 1.08998 * 109.47189 * 60.00622 * 19 18 17 32 32 H 1.09007 * 109.46957 * 179.97438 * 19 18 17 33 33 H 1.08998 * 109.47401 * 89.99364 * 21 20 17 34 34 H 1.09001 * 109.47146 * 209.99398 * 21 20 17 35 35 H 1.08997 * 109.47247 * 329.99493 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.4577 -1.3028 5 6 3.4719 0.4539 -2.2666 6 1 3.0626 0.3639 -3.2620 7 6 4.3459 1.4921 -1.9658 8 7 4.3928 2.5555 -2.7363 9 14 5.4538 1.3755 -0.4664 10 1 6.7531 0.7713 -0.8566 11 1 5.6857 2.7349 0.0847 12 1 4.8036 0.5276 0.5649 13 6 3.2519 -1.7770 -1.5525 14 8 3.0322 -2.5855 -0.6692 15 6 3.6436 -2.2379 -2.8863 16 6 3.7069 -3.5437 -3.2878 17 6 4.1045 -3.6914 -4.5951 18 6 4.2435 -5.0415 -5.2503 19 6 5.6977 -5.5072 -5.1551 20 6 4.3592 -2.5487 -5.2439 21 6 4.8081 -2.4639 -6.6799 22 16 4.1020 -1.2007 -4.2302 23 1 -1.0499 0.0001 -0.0002 24 1 3.0096 -0.6681 0.7802 25 1 3.0089 1.0109 0.1892 26 1 5.0523 3.2469 -2.5690 27 1 3.4684 -4.3758 -2.6419 28 1 3.5981 -5.7592 -4.7440 29 1 3.9533 -4.9682 -6.2984 30 1 6.3430 -4.7895 -5.6614 31 1 5.9879 -5.5805 -4.1070 32 1 5.7982 -6.4839 -5.6286 33 1 3.9358 -2.3976 -7.3301 34 1 5.4298 -1.5787 -6.8146 35 1 5.3836 -3.3541 -6.9339 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490985501.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:58 Heat of formation + Delta-G solvation = 31.221812 kcal Electronic energy + Delta-G solvation = -19082.759748 eV Core-core repulsion = 16173.415063 eV Total energy + Delta-G solvation = -2909.344686 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84538 -39.33790 -37.07885 -34.65352 -33.81011 -33.35496 -32.18842 -29.31595 -27.62071 -26.55942 -24.61281 -23.61018 -21.15255 -20.38707 -19.25613 -18.85423 -18.08196 -17.47652 -16.65597 -16.37555 -16.03508 -15.42785 -15.14300 -14.87642 -14.73155 -14.51231 -14.26556 -13.98727 -13.71610 -13.41294 -13.16863 -12.97846 -12.88176 -12.66373 -12.35049 -12.14422 -11.99419 -11.75535 -11.58719 -11.38292 -11.08336 -10.84429 -10.70227 -9.83502 -9.24903 -9.06814 -8.62664 -6.42967 -0.17701 0.96913 1.20443 1.33444 1.40605 1.48884 1.57199 1.68334 1.90907 2.16714 2.35387 2.76762 2.88066 3.58575 4.05693 4.07404 4.26773 4.32188 4.41619 4.51990 4.54321 4.60731 4.78235 4.80963 4.87200 5.04477 5.06396 5.08654 5.16432 5.27217 5.35965 5.44880 5.64488 5.80013 5.94388 6.03626 6.68112 6.79580 7.18850 7.58675 8.46171 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.018346 B = 0.007030 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.887685 B = 3981.859697 C = 4665.202569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.233 4.233 3 C 0.211 3.789 4 N -0.468 5.468 5 C -0.360 4.360 6 H 0.098 0.902 7 C 0.063 3.937 8 N -0.862 5.862 9 Si 0.899 3.101 10 H -0.272 1.272 11 H -0.263 1.263 12 H -0.245 1.245 13 C 0.552 3.448 14 O -0.610 6.610 15 C -0.285 4.285 16 C -0.075 4.075 17 C -0.136 4.136 18 C -0.058 4.058 19 C -0.142 4.142 20 C -0.266 4.266 21 C -0.077 4.077 22 S 0.290 5.710 23 H 0.257 0.743 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.288 0.712 27 H 0.135 0.865 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 -7.160 -5.526 9.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.234 4.234 3 C 0.090 3.910 4 N -0.188 5.188 5 C -0.491 4.491 6 H 0.114 0.886 7 C -0.147 4.147 8 N -0.495 5.495 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.188 1.188 12 H -0.169 1.169 13 C 0.344 3.656 14 O -0.498 6.498 15 C -0.405 4.405 16 C -0.110 4.110 17 C -0.148 4.148 18 C -0.097 4.097 19 C -0.199 4.199 20 C -0.385 4.385 21 C -0.135 4.135 22 S 0.565 5.435 23 H 0.273 0.727 24 H 0.105 0.895 25 H 0.115 0.885 26 H 0.098 0.902 27 H 0.153 0.847 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.166 -5.709 -5.365 7.920 hybrid contribution 0.178 -1.137 1.067 1.570 sum 1.343 -6.846 -4.298 8.194 Atomic orbital electron populations 1.25716 0.96554 0.99974 0.98222 1.24056 0.95709 1.01384 1.02268 1.18743 0.84503 1.00503 0.87296 1.43514 1.57540 1.04282 1.13498 1.18852 1.29969 1.07556 0.92747 0.88562 1.25887 0.96177 0.93186 0.99476 1.69794 1.32530 1.06475 1.40668 0.86547 0.80497 0.79215 0.81652 1.19756 1.18755 1.16852 1.17743 0.78409 0.82536 0.86918 1.90631 1.56903 1.54958 1.47290 1.24371 1.18234 0.98749 0.99179 1.20574 0.99552 0.94711 0.96137 1.18672 1.05863 0.97086 0.93156 1.20239 0.98066 0.90949 1.00456 1.21714 0.95279 1.01497 1.01432 1.25742 1.06749 1.01611 1.04364 1.20376 1.01726 1.03544 0.87863 1.84862 1.58247 1.03046 0.97302 0.72652 0.89518 0.88520 0.90169 0.84733 0.91172 0.89821 0.92689 0.94024 0.90531 0.89870 0.91293 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.67 19.25 74.32 1.43 -5.24 16 2 C -0.23 -10.05 13.62 31.13 0.42 -9.63 16 3 C 0.21 9.65 3.84 84.58 0.32 9.98 16 4 N -0.47 -23.29 1.86 -650.18 -1.21 -24.49 16 5 C -0.36 -18.25 7.25 84.09 0.61 -17.64 16 6 H 0.10 5.14 5.49 -16.63 -0.09 5.04 16 7 C 0.06 3.13 5.24 84.94 0.45 3.58 16 8 N -0.86 -43.90 13.95 21.67 0.30 -43.60 16 9 Si 0.90 38.74 26.58 68.60 1.82 40.56 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 12 H -0.24 -10.33 5.23 99.48 0.52 -9.81 16 13 C 0.55 28.04 7.53 86.38 0.65 28.69 16 14 O -0.61 -33.05 16.49 -4.48 -0.07 -33.12 16 15 C -0.28 -12.95 6.31 24.07 0.15 -12.80 16 16 C -0.07 -2.96 9.79 21.74 0.21 -2.75 16 17 C -0.14 -4.50 5.04 -21.05 -0.11 -4.60 16 18 C -0.06 -1.40 5.54 29.85 0.17 -1.24 16 19 C -0.14 -3.03 9.83 71.98 0.71 -2.33 16 20 C -0.27 -8.74 6.28 24.69 0.15 -8.58 16 21 C -0.08 -1.85 9.71 71.23 0.69 -1.16 16 22 S 0.29 11.85 18.27 -56.49 -1.03 10.82 16 23 H 0.26 6.20 7.80 -4.42 -0.03 6.17 16 24 H 0.09 3.92 7.37 -2.38 -0.02 3.90 16 25 H 0.10 4.22 5.25 -2.39 -0.01 4.20 16 26 H 0.29 13.53 8.32 -92.71 -0.77 12.76 16 27 H 0.13 5.23 8.06 -2.91 -0.02 5.20 16 28 H 0.07 1.63 8.10 -2.39 -0.02 1.61 16 29 H 0.08 1.72 7.46 -2.39 -0.02 1.70 16 30 H 0.05 1.16 7.24 -2.39 -0.02 1.14 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.75 6.39 -2.39 -0.02 1.73 16 Total: -1.00 -62.03 309.86 6.51 -55.52 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.84 Total: 18.04 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 5.86 Total: -23.73 kcal Atomic # 7 Polarization: -67.19 SS G_CDS: -0.91 Total: -68.09 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.07 Total: -33.12 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 1.82 Total: 40.56 kcal Atomic # 16 Polarization: 11.85 SS G_CDS: -1.03 Total: 10.82 kcal Total: -62.03 6.51 -55.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490985501.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.743 kcal (2) G-P(sol) polarization free energy of solvation -62.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds