Wall clock time and date at job start Mon Mar 30 2020 02:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47244 * 285.04741 * 3 2 1 5 5 C 1.33221 * 120.00252 * 232.21997 * 4 3 2 6 6 H 1.07999 * 120.00169 * 208.67837 * 5 4 3 7 7 C 1.46788 * 119.99936 * 28.67616 * 5 4 3 8 8 N 1.29321 * 120.00232 * 10.61703 * 7 5 4 9 9 Si 1.86805 * 120.00118 * 190.61519 * 7 5 4 10 10 H 1.48498 * 109.46933 * 59.99944 * 9 7 5 11 11 H 1.48503 * 109.47127 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46833 * 299.99948 * 9 7 5 13 13 C 1.34774 * 119.99646 * 52.22323 * 4 3 2 14 14 O 1.21643 * 119.99905 * 187.94857 * 13 4 3 15 15 C 1.46414 * 120.00123 * 7.94474 * 13 4 3 16 16 C 1.38152 * 126.27214 * 18.92641 * 15 13 4 17 17 C 1.39719 * 106.96042 * 180.27205 * 16 15 13 18 18 N 1.48026 * 126.07021 * 179.72002 * 17 16 15 19 19 O 1.31690 * 119.99799 * 180.02562 * 18 17 16 20 20 O 1.31696 * 119.99693 * 0.02562 * 18 17 16 21 21 C 1.35562 * 107.85618 * 359.74334 * 17 16 15 22 22 N 1.34947 * 108.99973 * 359.97438 * 21 17 16 23 23 C 1.46501 * 125.63903 * 180.02562 * 22 21 17 24 24 H 4.40646 * 5.51373 * 179.97438 * 4 1 2 25 25 H 1.09008 * 109.46627 * 165.05111 * 3 2 1 26 26 H 1.08998 * 109.47107 * 45.05498 * 3 2 1 27 27 H 0.96995 * 119.99878 * 180.02562 * 8 7 5 28 28 H 1.07998 * 126.51574 * 0.02562 * 16 15 13 29 29 H 1.08001 * 125.49940 * 179.97438 * 21 17 16 30 30 H 1.08994 * 109.47383 * 96.48375 * 23 22 21 31 31 H 1.09002 * 109.47064 * 336.48124 * 23 22 21 32 32 H 1.09005 * 109.47304 * 216.48352 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3577 1.3339 5 6 4.0226 0.4214 1.9496 6 1 4.7173 -0.0064 2.6573 7 6 4.0570 1.8612 1.6661 8 7 3.1048 2.4088 0.9835 9 14 5.4762 2.9027 2.2912 10 1 6.7507 2.3946 1.7232 11 1 5.2757 4.3139 1.8746 12 1 5.5299 2.8275 3.7734 13 6 2.6855 -1.4757 1.9380 14 8 2.9767 -1.6991 3.0977 15 6 1.8472 -2.4212 1.1985 16 6 1.7318 -2.5100 -0.1754 17 6 0.8258 -3.5395 -0.4426 18 7 0.3883 -3.9893 -1.7833 19 8 -0.4761 -4.9763 -1.8970 20 8 0.8636 -3.4025 -2.8622 21 6 0.4181 -4.0528 0.7440 22 7 1.0321 -3.3875 1.7447 23 6 0.8556 -3.6459 3.1759 24 1 -1.0500 0.0002 0.0001 25 1 3.0088 0.9938 -0.2651 26 1 3.0096 -0.7251 -0.7274 27 1 3.1278 3.3602 0.7959 28 1 2.2416 -1.8972 -0.9040 29 1 -0.2846 -4.8635 0.8684 30 1 1.6563 -4.2955 3.5293 31 1 -0.1061 -4.1315 3.3416 32 1 0.8853 -2.7029 3.7218 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490986521.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:28 Heat of formation + Delta-G solvation = 131.610059 kcal Electronic energy + Delta-G solvation = -21477.955718 eV Core-core repulsion = 18026.670979 eV Total energy + Delta-G solvation = -3451.284739 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.81093 -38.70767 -38.10631 -35.55109 -33.95751 -33.36887 -32.59367 -31.67723 -29.74828 -27.72959 -26.71212 -25.36828 -24.71654 -21.87203 -20.75256 -19.53723 -18.19217 -17.84100 -17.52256 -16.77091 -16.01895 -15.96747 -15.72728 -15.10017 -14.97424 -14.46250 -14.20965 -13.93303 -13.10020 -12.80242 -12.63133 -12.49308 -12.35237 -11.98204 -11.55456 -11.22750 -10.97781 -10.86112 -10.76637 -10.57725 -10.32936 -9.83175 -9.71038 -9.33843 -9.10406 -8.86442 -8.27935 -8.16459 -6.77208 -4.09082 -0.03899 1.47611 1.65217 2.49837 2.66786 2.99269 3.04365 3.06593 3.40615 3.61616 3.86129 3.96190 4.48148 4.61978 4.68505 4.72128 4.95098 5.07031 5.25014 5.31083 5.48523 5.65025 5.70403 5.90924 6.28735 6.44426 6.55922 6.68426 6.78665 6.86289 7.07101 7.24558 7.71287 8.13260 8.35483 8.76555 8.96578 9.68492 10.16273 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023734 B = 0.005952 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.475165 B = 4703.238394 C = 5396.088549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.141 4.141 3 C 0.177 3.823 4 N -0.381 5.381 5 C -0.339 4.339 6 H 0.109 0.891 7 C 0.042 3.958 8 N -0.827 5.827 9 Si 0.937 3.063 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.266 1.266 13 C 0.479 3.521 14 O -0.589 6.589 15 C 0.027 3.973 16 C -0.122 4.122 17 C -0.083 4.083 18 N 0.031 4.969 19 O -0.216 6.216 20 O -0.191 6.191 21 C 0.088 3.912 22 N -0.386 5.386 23 C 0.073 3.927 24 H 0.204 0.796 25 H 0.154 0.846 26 H 0.071 0.929 27 H 0.285 0.715 28 H 0.178 0.822 29 H 0.192 0.808 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 -5.564 0.707 6.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.142 4.142 3 C 0.056 3.944 4 N -0.094 5.094 5 C -0.468 4.468 6 H 0.127 0.873 7 C -0.171 4.171 8 N -0.460 5.460 9 Si 0.762 3.238 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.191 1.191 13 C 0.270 3.730 14 O -0.477 6.477 15 C -0.087 4.087 16 C -0.146 4.146 17 C -0.180 4.180 18 N 0.501 4.499 19 O -0.400 6.400 20 O -0.380 6.380 21 C -0.056 4.056 22 N -0.059 5.059 23 C -0.067 4.067 24 H 0.221 0.779 25 H 0.170 0.830 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.195 0.805 29 H 0.209 0.791 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.240 -5.293 2.105 6.554 hybrid contribution -0.058 0.390 -0.308 0.500 sum -3.298 -4.903 1.797 6.177 Atomic orbital electron populations 1.24460 0.95541 1.05080 1.00746 1.23216 0.94522 0.96844 0.99590 1.19413 0.83564 1.05955 0.85513 1.42139 1.34886 1.19268 1.13083 1.20489 1.11873 0.87515 1.26956 0.87314 1.27093 0.97519 0.96885 0.95593 1.68721 1.30479 1.13518 1.33291 0.85823 0.80345 0.77662 0.80003 1.19031 1.20494 1.19127 1.16512 0.85143 0.85444 0.85924 1.90624 1.62857 1.78074 1.16119 1.20922 1.00772 0.95979 0.90991 1.21875 0.99615 0.98222 0.94886 1.19302 1.11322 1.07266 0.80085 1.49500 0.98025 0.99003 1.03366 1.96219 1.28476 1.19604 1.95656 1.96263 1.59722 1.57579 1.24429 1.21443 0.99825 0.99183 0.85183 1.43891 1.30458 1.24080 1.07502 1.22369 1.03015 1.05433 0.75918 0.77896 0.82967 0.91192 0.90276 0.80550 0.79141 0.89298 0.89435 0.87613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.58 18.90 29.55 0.56 -4.02 16 2 C -0.14 -2.93 9.62 -37.12 -0.36 -3.28 16 3 C 0.18 3.76 4.98 -6.83 -0.03 3.73 16 4 N -0.38 -9.05 2.73 -117.96 -0.32 -9.37 16 5 C -0.34 -8.48 9.32 -13.49 -0.13 -8.61 16 6 H 0.11 2.82 7.66 -52.49 -0.40 2.42 16 7 C 0.04 0.98 5.29 -15.15 -0.08 0.90 16 8 N -0.83 -19.43 10.61 56.00 0.59 -18.83 16 9 Si 0.94 18.13 29.66 -169.99 -5.04 13.08 16 10 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 11 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 12 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 13 C 0.48 11.11 7.12 -12.97 -0.09 11.02 16 14 O -0.59 -14.92 15.07 5.24 0.08 -14.84 16 15 C 0.03 0.51 5.85 -81.96 -0.48 0.04 16 16 C -0.12 -2.26 7.25 -39.06 -0.28 -2.54 16 17 C -0.08 -1.43 7.17 -80.35 -0.58 -2.01 16 18 N 0.03 0.59 4.98 33.77 0.17 0.76 16 19 O -0.22 -3.98 19.76 -31.56 -0.62 -4.60 16 20 O -0.19 -3.80 19.78 -31.57 -0.62 -4.42 16 21 C 0.09 1.26 11.04 -17.14 -0.19 1.07 16 22 N -0.39 -6.02 3.15 -120.36 -0.38 -6.40 16 23 C 0.07 0.89 10.26 59.85 0.61 1.50 16 24 H 0.20 3.17 7.80 -54.09 -0.42 2.75 16 25 H 0.15 3.42 4.95 -51.92 -0.26 3.16 16 26 H 0.07 1.32 5.42 -51.93 -0.28 1.04 16 27 H 0.28 6.21 8.26 -40.82 -0.34 5.88 16 28 H 0.18 3.26 4.55 -52.49 -0.24 3.02 16 29 H 0.19 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.09 0.69 8.12 -51.93 -0.42 0.27 16 32 H 0.11 1.53 7.21 -51.93 -0.37 1.16 16 LS Contribution 294.03 15.07 4.43 4.43 Total: -1.00 -29.83 294.03 -5.14 -34.97 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -2.37 Total: 7.44 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.05 Total: -2.22 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.06 Total: -33.85 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -1.17 Total: -23.86 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.04 Total: 13.08 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.83 -5.14 -34.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490986521.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.577 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds