Wall clock time and date at job start Mon Mar 30 2020 02:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47244 * 285.04741 * 3 2 1 5 5 C 1.33221 * 120.00252 * 232.21997 * 4 3 2 6 6 H 1.07999 * 120.00169 * 208.67837 * 5 4 3 7 7 C 1.46788 * 119.99936 * 28.67616 * 5 4 3 8 8 N 1.29321 * 120.00232 * 10.61703 * 7 5 4 9 9 Si 1.86805 * 120.00118 * 190.61519 * 7 5 4 10 10 H 1.48498 * 109.46933 * 59.99944 * 9 7 5 11 11 H 1.48503 * 109.47127 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46833 * 299.99948 * 9 7 5 13 13 C 1.34774 * 119.99646 * 52.22323 * 4 3 2 14 14 O 1.21643 * 119.99905 * 187.94857 * 13 4 3 15 15 C 1.46414 * 120.00123 * 7.94474 * 13 4 3 16 16 C 1.38152 * 126.27214 * 18.92641 * 15 13 4 17 17 C 1.39719 * 106.96042 * 180.27205 * 16 15 13 18 18 N 1.48026 * 126.07021 * 179.72002 * 17 16 15 19 19 O 1.31690 * 119.99799 * 180.02562 * 18 17 16 20 20 O 1.31696 * 119.99693 * 0.02562 * 18 17 16 21 21 C 1.35562 * 107.85618 * 359.74334 * 17 16 15 22 22 N 1.34947 * 108.99973 * 359.97438 * 21 17 16 23 23 C 1.46501 * 125.63903 * 180.02562 * 22 21 17 24 24 H 4.40646 * 5.51373 * 179.97438 * 4 1 2 25 25 H 1.09008 * 109.46627 * 165.05111 * 3 2 1 26 26 H 1.08998 * 109.47107 * 45.05498 * 3 2 1 27 27 H 0.96995 * 119.99878 * 180.02562 * 8 7 5 28 28 H 1.07998 * 126.51574 * 0.02562 * 16 15 13 29 29 H 1.08001 * 125.49940 * 179.97438 * 21 17 16 30 30 H 1.08994 * 109.47383 * 96.48375 * 23 22 21 31 31 H 1.09002 * 109.47064 * 336.48124 * 23 22 21 32 32 H 1.09005 * 109.47304 * 216.48352 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3577 1.3339 5 6 4.0226 0.4214 1.9496 6 1 4.7173 -0.0064 2.6573 7 6 4.0570 1.8612 1.6661 8 7 3.1048 2.4088 0.9835 9 14 5.4762 2.9027 2.2912 10 1 6.7507 2.3946 1.7232 11 1 5.2757 4.3139 1.8746 12 1 5.5299 2.8275 3.7734 13 6 2.6855 -1.4757 1.9380 14 8 2.9767 -1.6991 3.0977 15 6 1.8472 -2.4212 1.1985 16 6 1.7318 -2.5100 -0.1754 17 6 0.8258 -3.5395 -0.4426 18 7 0.3883 -3.9893 -1.7833 19 8 -0.4761 -4.9763 -1.8970 20 8 0.8636 -3.4025 -2.8622 21 6 0.4181 -4.0528 0.7440 22 7 1.0321 -3.3875 1.7447 23 6 0.8556 -3.6459 3.1759 24 1 -1.0500 0.0002 0.0001 25 1 3.0088 0.9938 -0.2651 26 1 3.0096 -0.7251 -0.7274 27 1 3.1278 3.3602 0.7959 28 1 2.2416 -1.8972 -0.9040 29 1 -0.2846 -4.8635 0.8684 30 1 1.6563 -4.2955 3.5293 31 1 -0.1061 -4.1315 3.3416 32 1 0.8853 -2.7029 3.7218 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490986521.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:28 Heat of formation + Delta-G solvation = 113.874790 kcal Electronic energy + Delta-G solvation = -21478.724777 eV Core-core repulsion = 18026.670979 eV Total energy + Delta-G solvation = -3452.053798 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.18063 -40.39138 -39.54288 -37.31330 -35.39706 -34.91829 -34.02725 -33.36812 -31.20578 -29.00834 -28.32502 -26.94439 -26.15611 -23.43764 -22.13889 -20.99558 -19.84284 -19.40389 -18.95595 -18.33028 -17.60844 -17.31585 -17.08960 -16.60400 -16.47372 -16.03916 -15.77743 -15.40623 -14.62504 -14.32810 -14.24429 -13.70083 -13.60971 -13.41587 -13.14218 -12.85483 -12.54959 -12.43416 -12.19628 -12.13318 -11.79687 -11.43600 -11.36021 -10.99449 -10.68420 -10.44954 -9.94506 -9.70003 -8.53486 -5.97569 -1.45531 0.11073 0.24982 1.12031 1.34462 1.43400 1.46032 1.54256 1.84257 2.02627 2.24869 2.28814 2.90555 2.99144 3.32884 3.53143 3.62147 3.72978 3.88263 4.21511 4.29566 4.32458 4.45169 4.68016 4.74672 4.92113 5.06697 5.14019 5.27274 5.31300 5.64416 5.80425 5.89531 6.31258 6.79154 6.96227 7.19347 7.90056 8.39042 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023734 B = 0.005952 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.475165 B = 4703.238394 C = 5396.088549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.178 4.178 3 C 0.182 3.818 4 N -0.394 5.394 5 C -0.383 4.383 6 H 0.086 0.914 7 C 0.015 3.985 8 N -0.843 5.843 9 Si 1.000 3.000 10 H -0.259 1.259 11 H -0.266 1.266 12 H -0.273 1.273 13 C 0.473 3.527 14 O -0.622 6.622 15 C -0.003 4.003 16 C -0.112 4.112 17 C -0.108 4.108 18 N 0.037 4.963 19 O -0.187 6.187 20 O -0.253 6.253 21 C 0.141 3.859 22 N -0.381 5.381 23 C 0.067 3.933 24 H 0.238 0.762 25 H 0.138 0.862 26 H 0.084 0.916 27 H 0.292 0.708 28 H 0.167 0.833 29 H 0.247 0.753 30 H 0.096 0.904 31 H 0.144 0.856 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 -6.894 1.170 8.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.179 4.179 3 C 0.061 3.939 4 N -0.107 5.107 5 C -0.512 4.512 6 H 0.103 0.897 7 C -0.196 4.196 8 N -0.476 5.476 9 Si 0.821 3.179 10 H -0.184 1.184 11 H -0.190 1.190 12 H -0.199 1.199 13 C 0.266 3.734 14 O -0.512 6.512 15 C -0.115 4.115 16 C -0.136 4.136 17 C -0.205 4.205 18 N 0.502 4.498 19 O -0.380 6.380 20 O -0.426 6.426 21 C -0.006 4.006 22 N -0.053 5.053 23 C -0.071 4.071 24 H 0.255 0.745 25 H 0.155 0.845 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.184 0.816 29 H 0.263 0.737 30 H 0.115 0.885 31 H 0.162 0.838 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.068 -6.518 2.466 8.617 hybrid contribution 0.367 0.626 -0.350 0.806 sum -4.701 -5.893 2.116 7.830 Atomic orbital electron populations 1.25263 0.96335 1.03284 0.98930 1.23302 0.94848 0.98498 1.01266 1.19320 0.84434 1.05421 0.84774 1.42283 1.35013 1.19506 1.13879 1.20440 1.13378 0.88879 1.28512 0.89652 1.27806 0.99566 0.97014 0.95228 1.68783 1.31459 1.14086 1.33268 0.84918 0.77626 0.76560 0.78793 1.18387 1.18999 1.19865 1.16994 0.84897 0.85675 0.85867 1.90574 1.64126 1.78903 1.17648 1.20271 1.02592 0.97574 0.91084 1.21763 0.99276 0.98133 0.94458 1.19391 1.12512 1.08159 0.80464 1.49576 0.97768 0.98765 1.03652 1.96185 1.27372 1.18754 1.95709 1.96291 1.61991 1.59339 1.25009 1.22276 0.97365 0.97730 0.83191 1.44187 1.29171 1.22806 1.09127 1.22663 1.06419 1.04579 0.73482 0.74532 0.84502 0.89852 0.89595 0.81638 0.73686 0.88543 0.83833 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -8.11 18.90 74.32 1.40 -6.71 16 2 C -0.18 -7.46 9.62 31.13 0.30 -7.16 16 3 C 0.18 8.03 4.98 84.57 0.42 8.45 16 4 N -0.39 -19.57 2.73 -645.37 -1.76 -21.33 16 5 C -0.38 -20.18 9.32 86.72 0.81 -19.37 16 6 H 0.09 4.74 7.66 -2.91 -0.02 4.72 16 7 C 0.02 0.74 5.29 87.30 0.46 1.20 16 8 N -0.84 -40.42 10.61 23.26 0.25 -40.17 16 9 Si 1.00 37.74 29.66 68.60 2.03 39.78 16 10 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 11 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 12 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 13 C 0.47 22.68 7.12 86.37 0.61 23.30 16 14 O -0.62 -32.75 15.07 -4.17 -0.06 -32.81 16 15 C 0.00 -0.11 5.85 40.33 0.24 0.13 16 16 C -0.11 -4.08 7.25 22.61 0.16 -3.92 16 17 C -0.11 -3.45 7.17 36.11 0.26 -3.19 16 18 N 0.04 1.32 4.98 -47.08 -0.23 1.08 16 19 O -0.19 -6.19 19.76 3.53 0.07 -6.12 16 20 O -0.25 -10.12 19.78 3.52 0.07 -10.05 16 21 C 0.14 3.35 11.04 83.59 0.92 4.27 16 22 N -0.38 -10.72 3.15 -534.71 -1.68 -12.40 16 23 C 0.07 1.42 10.26 127.77 1.31 2.73 16 24 H 0.24 6.67 7.80 -4.42 -0.03 6.64 16 25 H 0.14 6.44 4.95 -2.38 -0.01 6.43 16 26 H 0.08 3.34 5.42 -2.39 -0.01 3.32 16 27 H 0.29 12.80 8.26 -92.71 -0.77 12.04 16 28 H 0.17 6.31 4.55 -2.91 -0.01 6.29 16 29 H 0.25 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.14 1.43 8.12 -2.39 -0.02 1.41 16 32 H 0.08 2.15 7.21 -2.38 -0.02 2.13 16 Total: -1.00 -68.37 294.03 6.76 -61.61 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 1.18 Total: 20.68 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 6.90 Total: -0.27 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -3.43 Total: -72.82 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: 0.08 Total: -48.98 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.78 kcal Total: -68.37 6.76 -61.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490986521.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.487 kcal (2) G-P(sol) polarization free energy of solvation -68.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds