Wall clock time and date at job start Mon Mar 30 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47406 * 100.39271 * 3 2 1 5 5 C 1.36882 * 120.00085 * 95.58393 * 4 3 2 6 6 H 1.08004 * 119.99553 * 224.77109 * 5 4 3 7 7 C 1.39002 * 120.00071 * 44.77998 * 5 4 3 8 8 N 1.31401 * 120.00339 * 16.93306 * 7 5 4 9 9 Si 1.86806 * 119.99870 * 196.93920 * 7 5 4 10 10 H 1.48506 * 109.46976 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46966 * 119.99455 * 9 7 5 12 12 H 1.48494 * 109.47129 * 239.99728 * 9 7 5 13 13 C 1.34778 * 119.99704 * 275.58343 * 4 3 2 14 14 O 1.21746 * 120.00248 * 5.43705 * 13 4 3 15 15 C 1.46462 * 119.99971 * 185.43345 * 13 4 3 16 16 C 1.36763 * 125.46288 * 184.29943 * 15 13 4 17 17 C 1.37442 * 113.27890 * 179.86424 * 16 15 13 18 18 C 1.33844 * 115.10740 * 0.42999 * 17 16 15 19 19 C 1.50706 * 124.51728 * 179.75942 * 18 17 16 20 20 C 1.53005 * 109.46966 * 120.02142 * 19 18 17 21 21 C 1.52998 * 109.47331 * 240.02609 * 19 18 17 22 22 S 1.70618 * 110.97106 * 359.76236 * 18 17 16 23 23 H 4.40637 * 5.51411 * 180.02562 * 4 1 2 24 24 H 1.09001 * 109.47400 * 340.38484 * 3 2 1 25 25 H 1.09012 * 109.47161 * 220.38923 * 3 2 1 26 26 H 0.96994 * 120.00032 * 180.02562 * 8 7 5 27 27 H 1.07998 * 123.36317 * 0.02562 * 16 15 13 28 28 H 1.08004 * 122.44875 * 180.19068 * 17 16 15 29 29 H 1.09003 * 109.46935 * 0.02918 * 19 18 17 30 30 H 1.09000 * 109.47504 * 300.00493 * 20 19 18 31 31 H 1.09003 * 109.46660 * 60.00607 * 20 19 18 32 32 H 1.09001 * 109.46674 * 180.02562 * 20 19 18 33 33 H 1.09000 * 109.47231 * 59.99814 * 21 19 18 34 34 H 1.08996 * 109.47012 * 179.97438 * 21 19 18 35 35 H 1.08997 * 109.46755 * 299.99717 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.2500 -1.3585 5 6 3.4706 1.5201 -1.7425 6 1 3.1465 1.8981 -2.7010 7 6 4.2295 2.3232 -0.8992 8 7 4.8999 1.7840 0.0940 9 14 4.2960 4.1692 -1.1776 10 1 3.4603 4.5229 -2.3531 11 1 3.7804 4.8702 0.0258 12 1 5.7005 4.5818 -1.4270 13 6 3.2523 -0.7711 -2.2302 14 8 2.8610 -1.8823 -1.9228 15 6 3.8512 -0.5441 -3.5473 16 6 3.9504 -1.4744 -4.5448 17 6 4.5558 -0.9911 -5.6801 18 6 4.9481 0.2869 -5.6144 19 6 5.6365 1.0275 -6.7319 20 6 4.7896 2.2340 -7.1418 21 6 7.0098 1.5061 -6.2566 22 16 4.5650 0.9659 -4.0967 23 1 -1.0500 0.0002 0.0001 24 1 3.0098 -0.9672 0.3450 25 1 3.0090 0.7836 0.6660 26 1 5.4291 2.3445 0.6827 27 1 3.5868 -2.4870 -4.4509 28 1 4.7076 -1.5992 -6.5597 29 1 5.7594 0.3625 -7.5868 30 1 3.8113 1.8930 -7.4804 31 1 4.6668 2.8989 -6.2869 32 1 5.2874 2.7693 -7.9504 33 1 7.6131 0.6465 -5.9645 34 1 7.5078 2.0413 -7.0650 35 1 6.8869 2.1710 -5.4017 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491014446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:18 Heat of formation + Delta-G solvation = 39.614346 kcal Electronic energy + Delta-G solvation = -19099.654346 eV Core-core repulsion = 16190.673588 eV Total energy + Delta-G solvation = -2908.980758 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.74887 -37.41909 -35.20140 -34.45807 -32.66302 -31.48203 -28.62837 -26.99990 -26.59708 -25.20375 -23.52257 -20.80143 -20.30584 -18.88345 -17.72326 -17.27210 -16.23410 -15.28033 -14.88851 -14.65403 -14.15081 -14.08716 -13.98772 -13.38218 -13.18257 -12.68774 -12.46286 -12.15642 -12.12249 -11.78765 -11.64172 -11.52204 -11.27783 -11.05628 -10.90022 -10.88926 -10.78541 -10.51952 -9.94557 -9.69921 -9.42796 -9.05412 -8.72751 -7.92593 -7.71641 -7.53375 -6.72091 -4.47717 1.46631 2.53769 2.91302 3.06030 3.08619 3.12148 3.22061 3.44227 3.66517 3.90205 4.27738 4.73648 4.82429 4.99114 5.13455 5.31039 5.34449 5.69374 5.73883 5.96542 5.97377 6.00002 6.08144 6.19613 6.30821 6.38553 6.41650 6.53533 6.69701 6.79762 6.83080 7.03005 7.11510 7.20849 7.65828 8.03653 8.40143 8.74127 9.22305 9.67423 10.29830 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.008032 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.528832 B = 3485.390851 C = 4688.521946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.157 4.157 3 C 0.222 3.778 4 N -0.434 5.434 5 C -0.344 4.344 6 H 0.100 0.900 7 C 0.063 3.937 8 N -0.837 5.837 9 Si 0.906 3.094 10 H -0.258 1.258 11 H -0.272 1.272 12 H -0.272 1.272 13 C 0.546 3.454 14 O -0.589 6.589 15 C -0.225 4.225 16 C -0.099 4.099 17 C -0.157 4.157 18 C -0.280 4.280 19 C -0.019 4.019 20 C -0.146 4.146 21 C -0.146 4.146 22 S 0.297 5.703 23 H 0.208 0.792 24 H 0.083 0.917 25 H 0.118 0.882 26 H 0.278 0.722 27 H 0.135 0.865 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 3.451 -7.726 8.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.158 4.158 3 C 0.099 3.901 4 N -0.152 5.152 5 C -0.478 4.478 6 H 0.117 0.883 7 C -0.149 4.149 8 N -0.469 5.469 9 Si 0.730 3.270 10 H -0.181 1.181 11 H -0.198 1.198 12 H -0.197 1.197 13 C 0.336 3.664 14 O -0.475 6.475 15 C -0.346 4.346 16 C -0.133 4.133 17 C -0.188 4.188 18 C -0.398 4.398 19 C -0.039 4.039 20 C -0.204 4.204 21 C -0.204 4.204 22 S 0.572 5.428 23 H 0.225 0.775 24 H 0.101 0.899 25 H 0.136 0.864 26 H 0.089 0.911 27 H 0.153 0.847 28 H 0.136 0.864 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.826 4.381 -6.814 8.304 hybrid contribution -0.334 -0.675 -0.756 1.068 sum 1.491 3.705 -7.570 8.560 Atomic orbital electron populations 1.24608 0.95638 1.04601 1.02027 1.24286 0.95446 0.97310 0.98745 1.18359 0.81663 1.02966 0.87091 1.43124 1.55621 1.06426 1.09994 1.19391 1.33571 0.89695 1.05151 0.88304 1.25567 0.92740 1.00841 0.95737 1.69903 1.23946 1.36855 1.16215 0.86168 0.79062 0.82104 0.79692 1.18148 1.19763 1.19687 1.17380 0.80902 0.84171 0.83958 1.90675 1.54282 1.23985 1.78606 1.24584 1.11555 0.98941 0.99563 1.20451 1.00906 0.99873 0.92027 1.19625 1.04785 0.95154 0.99236 1.25472 1.07728 1.00750 1.05873 1.19536 0.94033 0.95842 0.94449 1.21915 0.99820 0.97323 1.01296 1.21917 0.95964 1.01324 1.01209 1.84345 1.48985 1.10060 0.99443 0.77495 0.89915 0.86433 0.91116 0.84703 0.86419 0.90915 0.92471 0.92232 0.92644 0.92455 0.92634 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.93 19.25 29.55 0.57 -4.37 16 2 C -0.16 -3.54 13.60 -37.13 -0.50 -4.04 16 3 C 0.22 5.28 5.31 -6.83 -0.04 5.25 16 4 N -0.43 -10.93 2.43 -119.50 -0.29 -11.22 16 5 C -0.34 -8.30 6.65 -15.01 -0.10 -8.40 16 6 H 0.10 2.34 5.73 -36.81 -0.21 2.12 16 7 C 0.06 1.46 4.95 -17.45 -0.09 1.38 16 8 N -0.84 -20.25 11.82 55.50 0.66 -19.59 16 9 Si 0.91 17.85 29.59 -169.99 -5.03 12.82 16 10 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 11 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 12 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 13 C 0.55 14.11 7.52 -12.95 -0.10 14.01 16 14 O -0.59 -16.40 16.56 5.15 0.09 -16.32 16 15 C -0.23 -5.16 6.29 -36.81 -0.23 -5.39 16 16 C -0.10 -2.04 10.02 -40.41 -0.40 -2.44 16 17 C -0.16 -2.80 9.95 -41.41 -0.41 -3.21 16 18 C -0.28 -4.82 4.95 -35.85 -0.18 -5.00 16 19 C -0.02 -0.26 3.25 -91.77 -0.30 -0.56 16 20 C -0.15 -1.82 9.08 37.16 0.34 -1.48 16 21 C -0.15 -1.87 9.08 37.16 0.34 -1.53 16 22 S 0.30 5.88 17.70 -107.50 -1.90 3.98 16 23 H 0.21 3.11 7.80 -54.09 -0.42 2.69 16 24 H 0.08 1.99 7.68 -51.93 -0.40 1.59 16 25 H 0.12 2.80 6.01 -51.92 -0.31 2.49 16 26 H 0.28 6.25 8.31 -40.82 -0.34 5.91 16 27 H 0.14 2.69 8.06 -52.49 -0.42 2.27 16 28 H 0.12 1.80 8.06 -52.48 -0.42 1.37 16 29 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.78 7.90 -51.93 -0.41 0.37 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.81 7.90 -51.93 -0.41 0.40 16 LS Contribution 317.42 15.07 4.78 4.78 Total: -1.00 -28.01 317.42 -7.06 -35.07 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.25 Total: 6.27 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -1.10 Total: -15.79 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.36 Total: -30.81 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.09 Total: -16.32 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 16 Polarization: 5.88 SS G_CDS: -1.90 Total: 3.98 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.01 -7.06 -35.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491014446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.681 kcal (2) G-P(sol) polarization free energy of solvation -28.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds